Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18375 and HMPREF1058_RS18370 are separated by 290 nucleotides HMPREF1058_RS18370 and HMPREF1058_RS18365 overlap by 8 nucleotides
HMPREF1058_RS18375: HMPREF1058_RS18375 - sodium:solute symporter, at 174,301 to 175,872
_RS18375
HMPREF1058_RS18370: HMPREF1058_RS18370 - methionine synthase, at 176,163 to 176,849
_RS18370
HMPREF1058_RS18365: HMPREF1058_RS18365 - methylcobamide--CoM methyltransferase, at 176,842 to 177,852
_RS18365
Position (kb) 176
177 Strain fitness (log2 ratio) -2
-1
0
1
2 at 175.216 kb on + strand, within HMPREF1058_RS18375 at 175.349 kb on - strand, within HMPREF1058_RS18375 at 175.743 kb on + strand at 175.761 kb on + strand at 175.767 kb on - strand at 175.906 kb on + strand at 175.906 kb on + strand at 175.906 kb on + strand at 176.029 kb on + strand at 176.030 kb on - strand at 176.051 kb on + strand at 176.114 kb on - strand at 176.127 kb on - strand at 176.216 kb on + strand at 176.216 kb on + strand at 176.217 kb on - strand at 176.217 kb on - strand at 176.228 kb on + strand at 176.271 kb on + strand, within HMPREF1058_RS18370 at 176.273 kb on + strand, within HMPREF1058_RS18370 at 176.397 kb on - strand, within HMPREF1058_RS18370 at 176.466 kb on + strand, within HMPREF1058_RS18370 at 176.471 kb on + strand, within HMPREF1058_RS18370 at 176.472 kb on - strand, within HMPREF1058_RS18370 at 176.502 kb on + strand, within HMPREF1058_RS18370 at 176.503 kb on - strand, within HMPREF1058_RS18370 at 176.615 kb on + strand, within HMPREF1058_RS18370 at 176.615 kb on + strand, within HMPREF1058_RS18370 at 176.794 kb on + strand at 176.795 kb on - strand at 176.850 kb on + strand at 176.887 kb on - strand at 177.081 kb on + strand, within HMPREF1058_RS18365 at 177.124 kb on + strand, within HMPREF1058_RS18365 at 177.138 kb on + strand, within HMPREF1058_RS18365 at 177.151 kb on - strand, within HMPREF1058_RS18365 at 177.380 kb on + strand, within HMPREF1058_RS18365 at 177.380 kb on + strand, within HMPREF1058_RS18365 at 177.384 kb on + strand, within HMPREF1058_RS18365 at 177.410 kb on + strand, within HMPREF1058_RS18365 at 177.489 kb on + strand, within HMPREF1058_RS18365 at 177.490 kb on - strand, within HMPREF1058_RS18365 at 177.490 kb on - strand, within HMPREF1058_RS18365 at 177.710 kb on + strand, within HMPREF1058_RS18365 at 177.789 kb on + strand at 177.846 kb on + strand at 177.846 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 175,216 + HMPREF1058_RS18375 0.58 +0.1 175,349 - HMPREF1058_RS18375 0.67 -0.3 175,743 + +0.6 175,761 + -0.3 175,767 - +0.8 175,906 + -1.8 175,906 + -1.0 175,906 + +0.4 176,029 + +0.1 176,030 - +1.1 176,051 + +0.1 176,114 - +1.4 176,127 - +0.9 176,216 + -0.3 176,216 + -2.0 176,217 - -0.8 176,217 - -0.1 176,228 + -1.6 176,271 + HMPREF1058_RS18370 0.16 +1.8 176,273 + HMPREF1058_RS18370 0.16 +1.9 176,397 - HMPREF1058_RS18370 0.34 +2.0 176,466 + HMPREF1058_RS18370 0.44 -0.1 176,471 + HMPREF1058_RS18370 0.45 +0.3 176,472 - HMPREF1058_RS18370 0.45 -2.2 176,502 + HMPREF1058_RS18370 0.49 -0.1 176,503 - HMPREF1058_RS18370 0.49 +1.3 176,615 + HMPREF1058_RS18370 0.66 +0.2 176,615 + HMPREF1058_RS18370 0.66 +0.9 176,794 + +1.1 176,795 - -1.6 176,850 + +0.1 176,887 - -0.6 177,081 + HMPREF1058_RS18365 0.24 -0.8 177,124 + HMPREF1058_RS18365 0.28 +0.8 177,138 + HMPREF1058_RS18365 0.29 +1.9 177,151 - HMPREF1058_RS18365 0.31 +0.1 177,380 + HMPREF1058_RS18365 0.53 +0.1 177,380 + HMPREF1058_RS18365 0.53 -0.7 177,384 + HMPREF1058_RS18365 0.54 +0.8 177,410 + HMPREF1058_RS18365 0.56 +0.4 177,489 + HMPREF1058_RS18365 0.64 +0.2 177,490 - HMPREF1058_RS18365 0.64 +0.7 177,490 - HMPREF1058_RS18365 0.64 +0.0 177,710 + HMPREF1058_RS18365 0.86 -0.8 177,789 + -1.0 177,846 + +0.5 177,846 + +0.2
Or see this region's nucleotide sequence