Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18295 and HMPREF1058_RS18290 are separated by 125 nucleotides HMPREF1058_RS18290 and HMPREF1058_RS18285 are separated by 832 nucleotides
HMPREF1058_RS18295: HMPREF1058_RS18295 - response regulator, at 205,726 to 210,129
_RS18295
HMPREF1058_RS18290: HMPREF1058_RS18290 - glycoside hydrolase family 2, at 210,255 to 212,879
_RS18290
HMPREF1058_RS18285: HMPREF1058_RS18285 - RNA-binding transcriptional accessory protein, at 213,712 to 215,841
_RS18285
Position (kb) 210
211
212
213 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 209.255 kb on + strand, within HMPREF1058_RS18295 at 209.256 kb on - strand, within HMPREF1058_RS18295 at 209.256 kb on - strand, within HMPREF1058_RS18295 at 209.260 kb on - strand, within HMPREF1058_RS18295 at 209.369 kb on - strand, within HMPREF1058_RS18295 at 209.440 kb on - strand, within HMPREF1058_RS18295 at 209.535 kb on - strand, within HMPREF1058_RS18295 at 209.557 kb on - strand, within HMPREF1058_RS18295 at 209.559 kb on - strand, within HMPREF1058_RS18295 at 209.595 kb on + strand, within HMPREF1058_RS18295 at 209.648 kb on - strand, within HMPREF1058_RS18295 at 209.777 kb on + strand at 209.817 kb on - strand at 209.817 kb on - strand at 209.845 kb on + strand at 209.845 kb on + strand at 209.846 kb on - strand at 209.847 kb on + strand at 209.847 kb on + strand at 209.847 kb on + strand at 209.847 kb on + strand at 209.848 kb on - strand at 209.848 kb on - strand at 209.848 kb on - strand at 209.869 kb on + strand at 209.954 kb on - strand at 209.954 kb on - strand at 209.954 kb on - strand at 210.044 kb on + strand at 210.045 kb on - strand at 210.060 kb on + strand at 210.069 kb on + strand at 210.070 kb on - strand at 210.070 kb on - strand at 210.071 kb on + strand at 210.106 kb on + strand at 210.115 kb on + strand at 210.115 kb on + strand at 210.115 kb on + strand at 210.118 kb on - strand at 210.119 kb on + strand at 210.120 kb on - strand at 210.137 kb on + strand at 210.202 kb on - strand at 210.251 kb on + strand at 210.252 kb on - strand at 210.256 kb on + strand at 210.256 kb on + strand at 210.456 kb on + strand at 210.625 kb on - strand, within HMPREF1058_RS18290 at 210.630 kb on - strand, within HMPREF1058_RS18290 at 210.672 kb on - strand, within HMPREF1058_RS18290 at 210.748 kb on + strand, within HMPREF1058_RS18290 at 210.749 kb on - strand, within HMPREF1058_RS18290 at 210.752 kb on + strand, within HMPREF1058_RS18290 at 210.753 kb on - strand, within HMPREF1058_RS18290 at 210.833 kb on + strand, within HMPREF1058_RS18290 at 210.834 kb on - strand at 210.863 kb on - strand, within HMPREF1058_RS18290 at 210.866 kb on + strand, within HMPREF1058_RS18290 at 211.127 kb on - strand, within HMPREF1058_RS18290 at 211.132 kb on + strand, within HMPREF1058_RS18290 at 211.156 kb on + strand, within HMPREF1058_RS18290 at 211.156 kb on + strand, within HMPREF1058_RS18290 at 211.335 kb on - strand, within HMPREF1058_RS18290 at 211.335 kb on - strand, within HMPREF1058_RS18290 at 211.337 kb on + strand, within HMPREF1058_RS18290 at 211.386 kb on - strand, within HMPREF1058_RS18290 at 211.775 kb on + strand, within HMPREF1058_RS18290 at 211.844 kb on - strand, within HMPREF1058_RS18290 at 211.923 kb on - strand, within HMPREF1058_RS18290 at 212.005 kb on + strand, within HMPREF1058_RS18290 at 212.012 kb on - strand, within HMPREF1058_RS18290 at 212.203 kb on + strand, within HMPREF1058_RS18290 at 212.227 kb on - strand, within HMPREF1058_RS18290 at 212.228 kb on + strand, within HMPREF1058_RS18290 at 212.296 kb on - strand, within HMPREF1058_RS18290 at 212.361 kb on - strand, within HMPREF1058_RS18290 at 212.361 kb on - strand, within HMPREF1058_RS18290 at 212.363 kb on - strand, within HMPREF1058_RS18290 at 212.363 kb on - strand, within HMPREF1058_RS18290 at 212.442 kb on + strand at 212.515 kb on - strand, within HMPREF1058_RS18290 at 212.518 kb on + strand, within HMPREF1058_RS18290 at 212.518 kb on + strand, within HMPREF1058_RS18290 at 212.519 kb on - strand, within HMPREF1058_RS18290 at 212.624 kb on - strand at 212.683 kb on - strand at 212.683 kb on - strand at 212.710 kb on - strand at 212.767 kb on + strand at 212.769 kb on + strand at 212.772 kb on + strand at 212.773 kb on - strand at 212.859 kb on + strand at 212.884 kb on - strand at 212.884 kb on - strand at 212.981 kb on - strand at 213.054 kb on + strand at 213.077 kb on - strand at 213.077 kb on - strand at 213.216 kb on + strand at 213.216 kb on + strand at 213.245 kb on - strand at 213.399 kb on - strand at 213.500 kb on + strand at 213.758 kb on + strand at 213.768 kb on - strand at 213.863 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 209,255 + HMPREF1058_RS18295 0.80 -1.5 209,256 - HMPREF1058_RS18295 0.80 +0.3 209,256 - HMPREF1058_RS18295 0.80 -0.6 209,260 - HMPREF1058_RS18295 0.80 -1.7 209,369 - HMPREF1058_RS18295 0.83 +1.3 209,440 - HMPREF1058_RS18295 0.84 -0.5 209,535 - HMPREF1058_RS18295 0.86 -0.3 209,557 - HMPREF1058_RS18295 0.87 -0.4 209,559 - HMPREF1058_RS18295 0.87 -0.2 209,595 + HMPREF1058_RS18295 0.88 -0.0 209,648 - HMPREF1058_RS18295 0.89 +0.8 209,777 + +2.1 209,817 - +0.5 209,817 - -1.0 209,845 + -1.0 209,845 + +0.9 209,846 - -0.4 209,847 + -0.6 209,847 + +2.3 209,847 + +0.1 209,847 + -1.0 209,848 - -0.4 209,848 - +0.8 209,848 - +0.1 209,869 + +0.4 209,954 - +0.8 209,954 - +0.6 209,954 - -1.6 210,044 + +0.4 210,045 - +1.3 210,060 + -0.7 210,069 + +1.9 210,070 - -0.3 210,070 - +1.3 210,071 + +0.0 210,106 + +0.0 210,115 + +1.4 210,115 + -1.1 210,115 + +0.1 210,118 - -2.5 210,119 + -1.2 210,120 - +0.4 210,137 + -2.3 210,202 - +0.4 210,251 + -0.8 210,252 - -0.5 210,256 + +0.2 210,256 + -0.5 210,456 + +0.2 210,625 - HMPREF1058_RS18290 0.14 -0.7 210,630 - HMPREF1058_RS18290 0.14 +2.3 210,672 - HMPREF1058_RS18290 0.16 +1.2 210,748 + HMPREF1058_RS18290 0.19 -0.4 210,749 - HMPREF1058_RS18290 0.19 -1.5 210,752 + HMPREF1058_RS18290 0.19 -0.7 210,753 - HMPREF1058_RS18290 0.19 +1.5 210,833 + HMPREF1058_RS18290 0.22 -0.4 210,834 - -0.5 210,863 - HMPREF1058_RS18290 0.23 -0.9 210,866 + HMPREF1058_RS18290 0.23 -0.0 211,127 - HMPREF1058_RS18290 0.33 +0.4 211,132 + HMPREF1058_RS18290 0.33 -0.4 211,156 + HMPREF1058_RS18290 0.34 +0.5 211,156 + HMPREF1058_RS18290 0.34 +0.3 211,335 - HMPREF1058_RS18290 0.41 -0.2 211,335 - HMPREF1058_RS18290 0.41 -0.4 211,337 + HMPREF1058_RS18290 0.41 -0.2 211,386 - HMPREF1058_RS18290 0.43 -0.8 211,775 + HMPREF1058_RS18290 0.58 +0.1 211,844 - HMPREF1058_RS18290 0.61 -1.4 211,923 - HMPREF1058_RS18290 0.64 +1.1 212,005 + HMPREF1058_RS18290 0.67 +1.0 212,012 - HMPREF1058_RS18290 0.67 -0.2 212,203 + HMPREF1058_RS18290 0.74 -1.0 212,227 - HMPREF1058_RS18290 0.75 +0.3 212,228 + HMPREF1058_RS18290 0.75 +0.5 212,296 - HMPREF1058_RS18290 0.78 -2.3 212,361 - HMPREF1058_RS18290 0.80 +0.8 212,361 - HMPREF1058_RS18290 0.80 +0.8 212,363 - HMPREF1058_RS18290 0.80 +0.9 212,363 - HMPREF1058_RS18290 0.80 -1.7 212,442 + +0.0 212,515 - HMPREF1058_RS18290 0.86 -1.4 212,518 + HMPREF1058_RS18290 0.86 +0.3 212,518 + HMPREF1058_RS18290 0.86 -1.4 212,519 - HMPREF1058_RS18290 0.86 -0.7 212,624 - +1.1 212,683 - -1.1 212,683 - +1.6 212,710 - +1.6 212,767 + +0.0 212,769 + -0.6 212,772 + +0.3 212,773 - +0.1 212,859 + -0.4 212,884 - -0.2 212,884 - -1.4 212,981 - +1.3 213,054 + -0.2 213,077 - -1.1 213,077 - -0.2 213,216 + -1.0 213,216 + +0.1 213,245 - -0.6 213,399 - +1.9 213,500 + +0.1 213,758 + +0.2 213,768 - +1.1 213,863 + +3.4
Or see this region's nucleotide sequence