Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17850 and HMPREF1058_RS17845 are separated by 206 nucleotides HMPREF1058_RS17845 and HMPREF1058_RS17840 are separated by 74 nucleotides HMPREF1058_RS17840 and HMPREF1058_RS17835 are separated by 398 nucleotides
HMPREF1058_RS17850: HMPREF1058_RS17850 - ferritin, at 316,302 to 316,784
_RS17850
HMPREF1058_RS17845: HMPREF1058_RS17845 - 30S ribosomal protein S16, at 316,991 to 317,542
_RS17845
HMPREF1058_RS17840: HMPREF1058_RS17840 - Rpn family recombination-promoting nuclease/putative transposase, at 317,617 to 318,474
_RS17840
HMPREF1058_RS17835: HMPREF1058_RS17835 - choice-of-anchor J domain-containing protein, at 318,873 to 320,765
_RS17835
Position (kb) 317
318
319 Strain fitness (log2 ratio) -2
-1
0
1
2 at 316.714 kb on + strand, within HMPREF1058_RS17850 at 316.754 kb on + strand at 316.755 kb on - strand at 316.848 kb on + strand at 317.707 kb on - strand, within HMPREF1058_RS17840 at 317.751 kb on + strand, within HMPREF1058_RS17840 at 317.758 kb on - strand, within HMPREF1058_RS17840 at 317.786 kb on - strand, within HMPREF1058_RS17840 at 317.887 kb on - strand, within HMPREF1058_RS17840 at 317.934 kb on + strand, within HMPREF1058_RS17840 at 317.968 kb on - strand, within HMPREF1058_RS17840 at 317.976 kb on + strand, within HMPREF1058_RS17840 at 318.110 kb on + strand, within HMPREF1058_RS17840 at 318.111 kb on - strand, within HMPREF1058_RS17840 at 318.128 kb on + strand, within HMPREF1058_RS17840 at 318.129 kb on - strand, within HMPREF1058_RS17840 at 318.148 kb on - strand, within HMPREF1058_RS17840 at 318.148 kb on - strand, within HMPREF1058_RS17840 at 318.174 kb on + strand, within HMPREF1058_RS17840 at 318.183 kb on - strand, within HMPREF1058_RS17840 at 318.263 kb on + strand, within HMPREF1058_RS17840 at 318.315 kb on + strand, within HMPREF1058_RS17840 at 318.323 kb on + strand, within HMPREF1058_RS17840 at 318.324 kb on - strand, within HMPREF1058_RS17840 at 318.442 kb on + strand at 318.468 kb on + strand at 318.468 kb on + strand at 318.474 kb on + strand at 318.474 kb on + strand at 318.490 kb on - strand at 318.490 kb on - strand at 318.490 kb on - strand at 318.490 kb on - strand at 318.570 kb on - strand at 318.570 kb on - strand at 318.604 kb on - strand at 318.605 kb on + strand at 318.621 kb on - strand at 318.636 kb on + strand at 318.644 kb on + strand at 318.696 kb on + strand at 318.709 kb on + strand at 318.718 kb on + strand at 318.767 kb on + strand at 318.800 kb on - strand at 318.854 kb on - strand at 318.874 kb on + strand at 318.875 kb on - strand at 318.875 kb on - strand at 318.937 kb on + strand at 318.938 kb on - strand at 318.941 kb on + strand at 318.941 kb on + strand at 318.942 kb on - strand at 318.942 kb on - strand at 318.942 kb on - strand at 318.942 kb on - strand at 318.943 kb on + strand at 318.943 kb on + strand at 318.944 kb on - strand at 318.944 kb on - strand at 318.947 kb on + strand at 318.967 kb on + strand at 318.989 kb on - strand at 319.026 kb on - strand at 319.098 kb on - strand, within HMPREF1058_RS17835 at 319.171 kb on + strand, within HMPREF1058_RS17835 at 319.172 kb on - strand, within HMPREF1058_RS17835 at 319.208 kb on - strand, within HMPREF1058_RS17835 at 319.220 kb on + strand, within HMPREF1058_RS17835 at 319.220 kb on + strand, within HMPREF1058_RS17835 at 319.222 kb on + strand, within HMPREF1058_RS17835 at 319.326 kb on - strand, within HMPREF1058_RS17835 at 319.330 kb on - strand, within HMPREF1058_RS17835 at 319.425 kb on - strand, within HMPREF1058_RS17835 at 319.428 kb on - strand, within HMPREF1058_RS17835 at 319.430 kb on - strand, within HMPREF1058_RS17835 at 319.433 kb on - strand, within HMPREF1058_RS17835 at 319.433 kb on - strand, within HMPREF1058_RS17835
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 316,714 + HMPREF1058_RS17850 0.85 +1.0 316,754 + +0.7 316,755 - -1.3 316,848 + +0.2 317,707 - HMPREF1058_RS17840 0.10 +0.6 317,751 + HMPREF1058_RS17840 0.16 +0.4 317,758 - HMPREF1058_RS17840 0.16 +1.2 317,786 - HMPREF1058_RS17840 0.20 -1.3 317,887 - HMPREF1058_RS17840 0.31 +0.5 317,934 + HMPREF1058_RS17840 0.37 +0.7 317,968 - HMPREF1058_RS17840 0.41 +0.3 317,976 + HMPREF1058_RS17840 0.42 +0.4 318,110 + HMPREF1058_RS17840 0.57 +1.6 318,111 - HMPREF1058_RS17840 0.58 +1.2 318,128 + HMPREF1058_RS17840 0.60 +0.2 318,129 - HMPREF1058_RS17840 0.60 +0.3 318,148 - HMPREF1058_RS17840 0.62 +1.0 318,148 - HMPREF1058_RS17840 0.62 +0.8 318,174 + HMPREF1058_RS17840 0.65 +0.5 318,183 - HMPREF1058_RS17840 0.66 -0.5 318,263 + HMPREF1058_RS17840 0.75 +0.3 318,315 + HMPREF1058_RS17840 0.81 +0.1 318,323 + HMPREF1058_RS17840 0.82 +0.5 318,324 - HMPREF1058_RS17840 0.82 +0.3 318,442 + +2.7 318,468 + -0.8 318,468 + +0.3 318,474 + +1.7 318,474 + -0.6 318,490 - +0.7 318,490 - +0.3 318,490 - -0.9 318,490 - +0.8 318,570 - -0.5 318,570 - +0.3 318,604 - -0.0 318,605 + -0.8 318,621 - +0.1 318,636 + +0.6 318,644 + -0.1 318,696 + -1.0 318,709 + +0.8 318,718 + -1.2 318,767 + -0.0 318,800 - +1.1 318,854 - +0.9 318,874 + +1.0 318,875 - -0.1 318,875 - +1.3 318,937 + -0.7 318,938 - -0.2 318,941 + +0.3 318,941 + -0.1 318,942 - +0.1 318,942 - -2.2 318,942 - +0.2 318,942 - -1.1 318,943 + -2.0 318,943 + +0.7 318,944 - +0.3 318,944 - +0.3 318,947 + -0.4 318,967 + -0.1 318,989 - -0.0 319,026 - +0.1 319,098 - HMPREF1058_RS17835 0.12 +1.0 319,171 + HMPREF1058_RS17835 0.16 +1.5 319,172 - HMPREF1058_RS17835 0.16 -2.0 319,208 - HMPREF1058_RS17835 0.18 -2.4 319,220 + HMPREF1058_RS17835 0.18 +0.9 319,220 + HMPREF1058_RS17835 0.18 +0.7 319,222 + HMPREF1058_RS17835 0.18 -0.8 319,326 - HMPREF1058_RS17835 0.24 +0.7 319,330 - HMPREF1058_RS17835 0.24 -0.5 319,425 - HMPREF1058_RS17835 0.29 +0.6 319,428 - HMPREF1058_RS17835 0.29 -0.6 319,430 - HMPREF1058_RS17835 0.29 -0.9 319,433 - HMPREF1058_RS17835 0.30 -0.3 319,433 - HMPREF1058_RS17835 0.30 +0.4
Or see this region's nucleotide sequence