Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17770 and HMPREF1058_RS17765 are separated by 239 nucleotides HMPREF1058_RS17765 and HMPREF1058_RS17760 are separated by 321 nucleotides
HMPREF1058_RS17770: HMPREF1058_RS17770 - RNA polymerase sigma factor RpoD/SigA, at 338,593 to 339,453
_RS17770
HMPREF1058_RS17765: HMPREF1058_RS17765 - Do family serine endopeptidase, at 339,693 to 341,216
_RS17765
HMPREF1058_RS17760: HMPREF1058_RS17760 - YkgB family protein, at 341,538 to 342,128
_RS17760
Position (kb) 339
340
341
342 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 339.502 kb on - strand at 339.612 kb on - strand at 339.633 kb on - strand at 339.660 kb on + strand at 339.660 kb on + strand at 339.661 kb on - strand at 339.718 kb on + strand at 339.719 kb on - strand at 339.746 kb on + strand at 339.814 kb on - strand at 340.171 kb on - strand, within HMPREF1058_RS17765 at 340.206 kb on + strand, within HMPREF1058_RS17765 at 340.207 kb on - strand, within HMPREF1058_RS17765 at 340.406 kb on - strand, within HMPREF1058_RS17765 at 340.424 kb on - strand, within HMPREF1058_RS17765 at 340.535 kb on + strand, within HMPREF1058_RS17765 at 340.536 kb on - strand, within HMPREF1058_RS17765 at 340.536 kb on - strand, within HMPREF1058_RS17765 at 340.537 kb on + strand, within HMPREF1058_RS17765 at 340.537 kb on + strand, within HMPREF1058_RS17765 at 340.537 kb on + strand, within HMPREF1058_RS17765 at 340.811 kb on + strand, within HMPREF1058_RS17765 at 340.811 kb on + strand, within HMPREF1058_RS17765 at 340.813 kb on + strand, within HMPREF1058_RS17765 at 340.813 kb on + strand, within HMPREF1058_RS17765 at 340.982 kb on + strand, within HMPREF1058_RS17765 at 340.983 kb on - strand, within HMPREF1058_RS17765 at 340.989 kb on + strand, within HMPREF1058_RS17765 at 341.097 kb on - strand at 341.132 kb on + strand at 341.155 kb on - strand at 341.201 kb on + strand at 341.222 kb on - strand at 341.277 kb on - strand at 341.286 kb on + strand at 341.440 kb on + strand at 341.444 kb on + strand at 341.448 kb on + strand at 341.448 kb on + strand at 341.448 kb on + strand at 341.449 kb on - strand at 341.449 kb on - strand at 341.493 kb on + strand at 341.494 kb on - strand at 341.494 kb on - strand at 341.505 kb on - strand at 341.738 kb on + strand, within HMPREF1058_RS17760 at 341.846 kb on + strand, within HMPREF1058_RS17760 at 341.847 kb on - strand, within HMPREF1058_RS17760 at 341.993 kb on - strand, within HMPREF1058_RS17760 at 342.091 kb on - strand at 342.142 kb on - strand at 342.210 kb on + strand at 342.210 kb on + strand at 342.211 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 339,502 - -0.9 339,612 - -0.3 339,633 - -0.3 339,660 + +0.6 339,660 + +0.6 339,661 - -0.9 339,718 + +1.0 339,719 - -0.3 339,746 + +1.2 339,814 - +0.8 340,171 - HMPREF1058_RS17765 0.31 +2.1 340,206 + HMPREF1058_RS17765 0.34 +0.5 340,207 - HMPREF1058_RS17765 0.34 -0.0 340,406 - HMPREF1058_RS17765 0.47 +1.7 340,424 - HMPREF1058_RS17765 0.48 +2.0 340,535 + HMPREF1058_RS17765 0.55 +1.2 340,536 - HMPREF1058_RS17765 0.55 -1.6 340,536 - HMPREF1058_RS17765 0.55 +2.1 340,537 + HMPREF1058_RS17765 0.55 +1.5 340,537 + HMPREF1058_RS17765 0.55 +0.2 340,537 + HMPREF1058_RS17765 0.55 +1.3 340,811 + HMPREF1058_RS17765 0.73 +2.6 340,811 + HMPREF1058_RS17765 0.73 +1.6 340,813 + HMPREF1058_RS17765 0.73 +4.7 340,813 + HMPREF1058_RS17765 0.73 -0.9 340,982 + HMPREF1058_RS17765 0.85 +1.4 340,983 - HMPREF1058_RS17765 0.85 +0.1 340,989 + HMPREF1058_RS17765 0.85 +0.8 341,097 - +1.8 341,132 + +1.9 341,155 - +0.5 341,201 + +1.1 341,222 - +1.5 341,277 - +0.4 341,286 + +2.0 341,440 + +0.3 341,444 + +0.3 341,448 + +0.4 341,448 + -0.3 341,448 + +0.1 341,449 - -0.6 341,449 - -0.6 341,493 + -0.5 341,494 - +1.1 341,494 - -2.4 341,505 - -0.5 341,738 + HMPREF1058_RS17760 0.34 -0.5 341,846 + HMPREF1058_RS17760 0.52 +0.3 341,847 - HMPREF1058_RS17760 0.52 -0.3 341,993 - HMPREF1058_RS17760 0.77 -1.0 342,091 - +0.2 342,142 - -1.9 342,210 + -0.5 342,210 + +0.1 342,211 - +2.3
Or see this region's nucleotide sequence