Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17500

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17505 and HMPREF1058_RS17500 are separated by 147 nucleotidesHMPREF1058_RS17500 and HMPREF1058_RS17495 are separated by 84 nucleotides HMPREF1058_RS17505: HMPREF1058_RS17505 - discoidin domain-containing protein, at 412,180 to 415,410 _RS17505 HMPREF1058_RS17500: HMPREF1058_RS17500 - beta-glycosidase, at 415,558 to 418,398 _RS17500 HMPREF1058_RS17495: HMPREF1058_RS17495 - DUF4981 domain-containing protein, at 418,483 to 421,674 _RS17495 Position (kb) 415 416 417 418 419Strain fitness (log2 ratio) -2 -1 0 1 2 3at 414.687 kb on + strand, within HMPREF1058_RS17505at 414.904 kb on - strand, within HMPREF1058_RS17505at 414.918 kb on - strand, within HMPREF1058_RS17505at 414.979 kb on + strand, within HMPREF1058_RS17505at 414.982 kb on - strand, within HMPREF1058_RS17505at 414.982 kb on - strand, within HMPREF1058_RS17505at 414.982 kb on - strand, within HMPREF1058_RS17505at 414.982 kb on - strand, within HMPREF1058_RS17505at 415.063 kb on - strand, within HMPREF1058_RS17505at 415.104 kb on + strandat 415.104 kb on + strandat 415.107 kb on + strandat 415.107 kb on + strandat 415.119 kb on + strandat 415.217 kb on - strandat 415.388 kb on - strandat 415.411 kb on - strandat 415.420 kb on - strandat 415.436 kb on + strandat 415.475 kb on + strandat 415.476 kb on - strandat 415.590 kb on - strandat 415.628 kb on - strandat 415.653 kb on + strandat 415.706 kb on + strandat 415.748 kb on - strandat 415.751 kb on + strandat 415.752 kb on - strandat 415.765 kb on - strandat 415.777 kb on - strandat 415.777 kb on - strandat 415.780 kb on + strandat 415.780 kb on + strandat 415.781 kb on - strandat 415.830 kb on - strandat 415.878 kb on + strand, within HMPREF1058_RS17500at 415.878 kb on + strand, within HMPREF1058_RS17500at 415.880 kb on + strand, within HMPREF1058_RS17500at 415.881 kb on - strand, within HMPREF1058_RS17500at 415.881 kb on - strand, within HMPREF1058_RS17500at 416.031 kb on - strand, within HMPREF1058_RS17500at 416.074 kb on + strand, within HMPREF1058_RS17500at 416.102 kb on + strand, within HMPREF1058_RS17500at 416.226 kb on - strand, within HMPREF1058_RS17500at 416.396 kb on + strand, within HMPREF1058_RS17500at 416.463 kb on + strand, within HMPREF1058_RS17500at 416.644 kb on - strand, within HMPREF1058_RS17500at 416.661 kb on + strand, within HMPREF1058_RS17500at 416.661 kb on + strand, within HMPREF1058_RS17500at 416.661 kb on + strand, within HMPREF1058_RS17500at 416.662 kb on - strand, within HMPREF1058_RS17500at 416.662 kb on - strand, within HMPREF1058_RS17500at 416.774 kb on + strand, within HMPREF1058_RS17500at 416.775 kb on - strand, within HMPREF1058_RS17500at 416.943 kb on - strand, within HMPREF1058_RS17500at 416.968 kb on + strand, within HMPREF1058_RS17500at 416.998 kb on - strand, within HMPREF1058_RS17500at 417.020 kb on + strand, within HMPREF1058_RS17500at 417.020 kb on + strand, within HMPREF1058_RS17500at 417.114 kb on - strand, within HMPREF1058_RS17500at 417.181 kb on - strand, within HMPREF1058_RS17500at 417.193 kb on + strand, within HMPREF1058_RS17500at 417.281 kb on + strand, within HMPREF1058_RS17500at 417.376 kb on + strand, within HMPREF1058_RS17500at 417.377 kb on - strand, within HMPREF1058_RS17500at 417.408 kb on + strand, within HMPREF1058_RS17500at 417.477 kb on - strand, within HMPREF1058_RS17500at 417.555 kb on + strand, within HMPREF1058_RS17500at 417.581 kb on + strand, within HMPREF1058_RS17500at 417.715 kb on - strand, within HMPREF1058_RS17500at 417.719 kb on - strand, within HMPREF1058_RS17500at 417.719 kb on - strand, within HMPREF1058_RS17500at 417.787 kb on + strand, within HMPREF1058_RS17500at 417.976 kb on - strand, within HMPREF1058_RS17500at 417.981 kb on + strand, within HMPREF1058_RS17500at 418.030 kb on + strand, within HMPREF1058_RS17500at 418.120 kb on - strandat 418.120 kb on - strandat 418.142 kb on - strandat 418.187 kb on + strandat 418.188 kb on - strandat 418.188 kb on - strandat 418.204 kb on + strandat 418.282 kb on + strandat 418.282 kb on + strandat 418.283 kb on - strandat 418.283 kb on - strandat 418.283 kb on - strandat 418.375 kb on + strandat 418.420 kb on + strandat 418.462 kb on - strandat 418.659 kb on + strandat 418.660 kb on - strandat 418.660 kb on - strandat 418.672 kb on - strandat 418.673 kb on + strandat 418.706 kb on - strandat 418.738 kb on - strandat 418.806 kb on - strand, within HMPREF1058_RS17495at 418.833 kb on + strand, within HMPREF1058_RS17495at 418.837 kb on + strand, within HMPREF1058_RS17495at 418.838 kb on - strand, within HMPREF1058_RS17495at 418.921 kb on + strand, within HMPREF1058_RS17495at 418.973 kb on + strand, within HMPREF1058_RS17495at 418.974 kb on - strand, within HMPREF1058_RS17495at 418.974 kb on - strand, within HMPREF1058_RS17495at 419.006 kb on + strand, within HMPREF1058_RS17495at 419.006 kb on + strand, within HMPREF1058_RS17495at 419.013 kb on + strand, within HMPREF1058_RS17495at 419.014 kb on - strand, within HMPREF1058_RS17495at 419.014 kb on - strand, within HMPREF1058_RS17495at 419.116 kb on - strand, within HMPREF1058_RS17495at 419.116 kb on - strand, within HMPREF1058_RS17495at 419.119 kb on + strand, within HMPREF1058_RS17495at 419.125 kb on + strand, within HMPREF1058_RS17495at 419.188 kb on - strand, within HMPREF1058_RS17495at 419.222 kb on + strand, within HMPREF1058_RS17495at 419.278 kb on + strand, within HMPREF1058_RS17495at 419.279 kb on - strand, within HMPREF1058_RS17495at 419.375 kb on - strand, within HMPREF1058_RS17495at 419.378 kb on - strand, within HMPREF1058_RS17495at 419.379 kb on + strand, within HMPREF1058_RS17495at 419.379 kb on + strand, within HMPREF1058_RS17495at 419.379 kb on + strand, within HMPREF1058_RS17495at 419.380 kb on - strand, within HMPREF1058_RS17495at 419.380 kb on - strand, within HMPREF1058_RS17495

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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414,687 + HMPREF1058_RS17505 0.78 +0.5
414,904 - HMPREF1058_RS17505 0.84 +0.4
414,918 - HMPREF1058_RS17505 0.85 +0.0
414,979 + HMPREF1058_RS17505 0.87 +0.3
414,982 - HMPREF1058_RS17505 0.87 +0.1
414,982 - HMPREF1058_RS17505 0.87 -0.9
414,982 - HMPREF1058_RS17505 0.87 +0.3
414,982 - HMPREF1058_RS17505 0.87 -0.4
415,063 - HMPREF1058_RS17505 0.89 -1.6
415,104 + -0.0
415,104 + -0.4
415,107 + +0.0
415,107 + +0.3
415,119 + +1.2
415,217 - -0.9
415,388 - +2.3
415,411 - -0.3
415,420 - -0.2
415,436 + +0.0
415,475 + -1.0
415,476 - +1.1
415,590 - -2.2
415,628 - +0.3
415,653 + -0.5
415,706 + -1.1
415,748 - -1.5
415,751 + +0.6
415,752 - +0.5
415,765 - +1.0
415,777 - -0.8
415,777 - +0.0
415,780 + +0.9
415,780 + -0.1
415,781 - +0.5
415,830 - +1.3
415,878 + HMPREF1058_RS17500 0.11 +0.3
415,878 + HMPREF1058_RS17500 0.11 -0.1
415,880 + HMPREF1058_RS17500 0.11 -1.7
415,881 - HMPREF1058_RS17500 0.11 -0.8
415,881 - HMPREF1058_RS17500 0.11 -0.3
416,031 - HMPREF1058_RS17500 0.17 +0.1
416,074 + HMPREF1058_RS17500 0.18 +0.3
416,102 + HMPREF1058_RS17500 0.19 -0.2
416,226 - HMPREF1058_RS17500 0.24 -1.5
416,396 + HMPREF1058_RS17500 0.29 -0.6
416,463 + HMPREF1058_RS17500 0.32 -1.8
416,644 - HMPREF1058_RS17500 0.38 -1.0
416,661 + HMPREF1058_RS17500 0.39 -0.0
416,661 + HMPREF1058_RS17500 0.39 +0.5
416,661 + HMPREF1058_RS17500 0.39 +0.0
416,662 - HMPREF1058_RS17500 0.39 -1.1
416,662 - HMPREF1058_RS17500 0.39 -1.0
416,774 + HMPREF1058_RS17500 0.43 -0.1
416,775 - HMPREF1058_RS17500 0.43 -0.8
416,943 - HMPREF1058_RS17500 0.49 +0.0
416,968 + HMPREF1058_RS17500 0.50 -0.0
416,998 - HMPREF1058_RS17500 0.51 +0.9
417,020 + HMPREF1058_RS17500 0.51 +0.8
417,020 + HMPREF1058_RS17500 0.51 +0.8
417,114 - HMPREF1058_RS17500 0.55 -0.6
417,181 - HMPREF1058_RS17500 0.57 +0.4
417,193 + HMPREF1058_RS17500 0.58 -0.2
417,281 + HMPREF1058_RS17500 0.61 +0.0
417,376 + HMPREF1058_RS17500 0.64 -0.4
417,377 - HMPREF1058_RS17500 0.64 +0.4
417,408 + HMPREF1058_RS17500 0.65 +0.3
417,477 - HMPREF1058_RS17500 0.68 -1.6
417,555 + HMPREF1058_RS17500 0.70 +0.1
417,581 + HMPREF1058_RS17500 0.71 -0.2
417,715 - HMPREF1058_RS17500 0.76 -0.2
417,719 - HMPREF1058_RS17500 0.76 +1.3
417,719 - HMPREF1058_RS17500 0.76 +0.8
417,787 + HMPREF1058_RS17500 0.78 -0.2
417,976 - HMPREF1058_RS17500 0.85 +0.0
417,981 + HMPREF1058_RS17500 0.85 +0.9
418,030 + HMPREF1058_RS17500 0.87 -0.5
418,120 - -0.4
418,120 - -0.4
418,142 - +0.8
418,187 + +0.5
418,188 - -0.8
418,188 - -1.4
418,204 + -1.3
418,282 + -1.4
418,282 + +1.1
418,283 - +0.5
418,283 - +0.8
418,283 - -1.2
418,375 + +1.2
418,420 + +0.2
418,462 - +2.2
418,659 + +0.7
418,660 - +1.2
418,660 - +0.2
418,672 - +0.4
418,673 + -1.3
418,706 - -0.0
418,738 - +0.9
418,806 - HMPREF1058_RS17495 0.10 +0.8
418,833 + HMPREF1058_RS17495 0.11 -0.6
418,837 + HMPREF1058_RS17495 0.11 +0.6
418,838 - HMPREF1058_RS17495 0.11 +0.5
418,921 + HMPREF1058_RS17495 0.14 +0.9
418,973 + HMPREF1058_RS17495 0.15 +1.0
418,974 - HMPREF1058_RS17495 0.15 -0.6
418,974 - HMPREF1058_RS17495 0.15 +0.7
419,006 + HMPREF1058_RS17495 0.16 +0.3
419,006 + HMPREF1058_RS17495 0.16 +1.9
419,013 + HMPREF1058_RS17495 0.17 -0.6
419,014 - HMPREF1058_RS17495 0.17 +0.8
419,014 - HMPREF1058_RS17495 0.17 +1.0
419,116 - HMPREF1058_RS17495 0.20 -0.5
419,116 - HMPREF1058_RS17495 0.20 -0.2
419,119 + HMPREF1058_RS17495 0.20 -0.6
419,125 + HMPREF1058_RS17495 0.20 +2.3
419,188 - HMPREF1058_RS17495 0.22 -0.3
419,222 + HMPREF1058_RS17495 0.23 +3.0
419,278 + HMPREF1058_RS17495 0.25 +1.7
419,279 - HMPREF1058_RS17495 0.25 -0.4
419,375 - HMPREF1058_RS17495 0.28 +0.2
419,378 - HMPREF1058_RS17495 0.28 +0.8
419,379 + HMPREF1058_RS17495 0.28 +0.7
419,379 + HMPREF1058_RS17495 0.28 -0.5
419,379 + HMPREF1058_RS17495 0.28 -1.1
419,380 - HMPREF1058_RS17495 0.28 +1.6
419,380 - HMPREF1058_RS17495 0.28 +0.7

Or see this region's nucleotide sequence