Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17465

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17470 and HMPREF1058_RS17465 are separated by 90 nucleotidesHMPREF1058_RS17465 and HMPREF1058_RS17460 are separated by 440 nucleotides HMPREF1058_RS17470: HMPREF1058_RS17470 - transporter, at 431,469 to 433,067 _RS17470 HMPREF1058_RS17465: HMPREF1058_RS17465 - beta-galactosidase, at 433,158 to 437,438 _RS17465 HMPREF1058_RS17460: HMPREF1058_RS17460 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 437,879 to 438,493 _RS17460 Position (kb) 433 434 435 436 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 432.213 kb on - strandat 432.213 kb on - strand, within HMPREF1058_RS17470at 432.452 kb on + strand, within HMPREF1058_RS17470at 432.452 kb on + strand, within HMPREF1058_RS17470at 432.659 kb on + strand, within HMPREF1058_RS17470at 432.667 kb on - strand, within HMPREF1058_RS17470at 432.668 kb on + strand, within HMPREF1058_RS17470at 432.668 kb on + strand, within HMPREF1058_RS17470at 432.668 kb on + strand, within HMPREF1058_RS17470at 432.749 kb on - strand, within HMPREF1058_RS17470at 432.788 kb on + strand, within HMPREF1058_RS17470at 432.795 kb on - strand, within HMPREF1058_RS17470at 433.005 kb on - strandat 433.138 kb on - strandat 433.159 kb on + strandat 433.220 kb on + strandat 433.222 kb on + strandat 433.240 kb on + strandat 433.241 kb on - strandat 433.433 kb on + strandat 433.493 kb on + strandat 433.512 kb on - strandat 433.528 kb on + strandat 433.528 kb on + strandat 433.529 kb on - strandat 433.650 kb on - strand, within HMPREF1058_RS17465at 433.857 kb on - strand, within HMPREF1058_RS17465at 433.882 kb on - strand, within HMPREF1058_RS17465at 434.152 kb on + strand, within HMPREF1058_RS17465at 434.153 kb on - strand, within HMPREF1058_RS17465at 434.153 kb on - strand, within HMPREF1058_RS17465at 434.164 kb on + strand, within HMPREF1058_RS17465at 434.168 kb on + strand, within HMPREF1058_RS17465at 434.168 kb on + strand, within HMPREF1058_RS17465at 434.201 kb on + strand, within HMPREF1058_RS17465at 434.201 kb on + strand, within HMPREF1058_RS17465at 434.202 kb on - strand, within HMPREF1058_RS17465at 434.202 kb on - strand, within HMPREF1058_RS17465at 434.202 kb on - strand, within HMPREF1058_RS17465at 434.202 kb on - strand, within HMPREF1058_RS17465at 434.414 kb on + strand, within HMPREF1058_RS17465at 434.594 kb on - strand, within HMPREF1058_RS17465at 434.606 kb on - strand, within HMPREF1058_RS17465at 434.609 kb on + strand, within HMPREF1058_RS17465at 434.610 kb on - strand, within HMPREF1058_RS17465at 434.610 kb on - strand, within HMPREF1058_RS17465at 434.654 kb on + strand, within HMPREF1058_RS17465at 434.657 kb on - strand, within HMPREF1058_RS17465at 434.675 kb on + strand, within HMPREF1058_RS17465at 434.676 kb on - strand, within HMPREF1058_RS17465at 434.813 kb on + strand, within HMPREF1058_RS17465at 434.813 kb on + strand, within HMPREF1058_RS17465at 434.813 kb on + strand, within HMPREF1058_RS17465at 434.814 kb on - strand, within HMPREF1058_RS17465at 434.940 kb on - strand, within HMPREF1058_RS17465at 434.940 kb on - strand, within HMPREF1058_RS17465at 434.956 kb on + strand, within HMPREF1058_RS17465at 435.014 kb on + strand, within HMPREF1058_RS17465at 435.041 kb on + strand, within HMPREF1058_RS17465at 435.243 kb on - strand, within HMPREF1058_RS17465at 435.410 kb on + strand, within HMPREF1058_RS17465at 435.411 kb on - strand, within HMPREF1058_RS17465at 435.556 kb on + strand, within HMPREF1058_RS17465at 435.765 kb on - strand, within HMPREF1058_RS17465at 435.995 kb on + strand, within HMPREF1058_RS17465at 435.995 kb on + strand, within HMPREF1058_RS17465at 436.148 kb on - strand, within HMPREF1058_RS17465at 436.170 kb on - strand, within HMPREF1058_RS17465at 436.170 kb on - strand, within HMPREF1058_RS17465at 436.198 kb on + strand, within HMPREF1058_RS17465at 436.212 kb on - strand, within HMPREF1058_RS17465at 436.266 kb on - strand, within HMPREF1058_RS17465at 436.384 kb on - strand, within HMPREF1058_RS17465at 436.428 kb on + strand, within HMPREF1058_RS17465at 436.428 kb on + strand, within HMPREF1058_RS17465at 436.429 kb on - strand, within HMPREF1058_RS17465at 436.453 kb on + strand, within HMPREF1058_RS17465at 436.453 kb on + strand, within HMPREF1058_RS17465at 436.454 kb on - strand, within HMPREF1058_RS17465at 436.541 kb on - strand, within HMPREF1058_RS17465at 436.607 kb on + strand, within HMPREF1058_RS17465at 436.607 kb on + strand, within HMPREF1058_RS17465at 436.607 kb on + strand, within HMPREF1058_RS17465at 436.608 kb on - strand, within HMPREF1058_RS17465at 436.614 kb on + strand, within HMPREF1058_RS17465at 436.614 kb on + strand, within HMPREF1058_RS17465at 436.615 kb on - strand, within HMPREF1058_RS17465at 436.615 kb on - strand, within HMPREF1058_RS17465at 436.783 kb on + strand, within HMPREF1058_RS17465at 436.783 kb on + strand, within HMPREF1058_RS17465at 436.964 kb on - strand, within HMPREF1058_RS17465at 436.964 kb on - strand, within HMPREF1058_RS17465at 437.035 kb on + strandat 437.147 kb on + strandat 437.166 kb on - strandat 437.224 kb on + strandat 437.224 kb on + strandat 437.233 kb on + strandat 437.233 kb on + strandat 437.240 kb on + strandat 437.241 kb on - strandat 437.243 kb on - strandat 437.250 kb on - strandat 437.271 kb on - strandat 437.320 kb on + strandat 437.347 kb on + strandat 437.347 kb on + strandat 437.389 kb on + strandat 437.390 kb on - strandat 437.390 kb on - strandat 437.421 kb on + strandat 437.422 kb on - strandat 437.449 kb on + strandat 437.453 kb on + strandat 437.477 kb on - strandat 437.487 kb on - strandat 437.516 kb on + strandat 437.573 kb on + strandat 437.637 kb on - strandat 437.875 kb on - strandat 437.889 kb on - strandat 437.983 kb on - strand, within HMPREF1058_RS17460at 438.036 kb on + strand, within HMPREF1058_RS17460at 438.037 kb on - strand, within HMPREF1058_RS17460at 438.046 kb on + strand, within HMPREF1058_RS17460at 438.121 kb on - strand, within HMPREF1058_RS17460at 438.126 kb on + strand, within HMPREF1058_RS17460at 438.126 kb on + strand, within HMPREF1058_RS17460at 438.126 kb on + strand, within HMPREF1058_RS17460at 438.127 kb on - strandat 438.127 kb on - strand, within HMPREF1058_RS17460at 438.127 kb on - strand, within HMPREF1058_RS17460at 438.127 kb on - strand, within HMPREF1058_RS17460at 438.158 kb on + strand, within HMPREF1058_RS17460at 438.164 kb on + strand, within HMPREF1058_RS17460at 438.167 kb on - strand, within HMPREF1058_RS17460at 438.199 kb on + strand, within HMPREF1058_RS17460at 438.201 kb on + strand, within HMPREF1058_RS17460at 438.279 kb on + strand, within HMPREF1058_RS17460at 438.279 kb on + strand, within HMPREF1058_RS17460at 438.279 kb on + strand, within HMPREF1058_RS17460at 438.279 kb on + strand, within HMPREF1058_RS17460at 438.279 kb on + strand, within HMPREF1058_RS17460at 438.280 kb on - strand, within HMPREF1058_RS17460at 438.284 kb on - strand, within HMPREF1058_RS17460at 438.288 kb on - strand, within HMPREF1058_RS17460at 438.340 kb on + strand, within HMPREF1058_RS17460at 438.387 kb on - strand, within HMPREF1058_RS17460

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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432,213 - +0.0
432,213 - HMPREF1058_RS17470 0.47 +1.3
432,452 + HMPREF1058_RS17470 0.61 +0.1
432,452 + HMPREF1058_RS17470 0.61 -0.9
432,659 + HMPREF1058_RS17470 0.74 -1.4
432,667 - HMPREF1058_RS17470 0.75 -0.9
432,668 + HMPREF1058_RS17470 0.75 -1.0
432,668 + HMPREF1058_RS17470 0.75 -0.9
432,668 + HMPREF1058_RS17470 0.75 +0.8
432,749 - HMPREF1058_RS17470 0.80 +0.1
432,788 + HMPREF1058_RS17470 0.82 +0.7
432,795 - HMPREF1058_RS17470 0.83 -1.0
433,005 - -1.0
433,138 - +1.3
433,159 + +0.0
433,220 + +0.1
433,222 + +1.3
433,240 + -0.8
433,241 - -0.6
433,433 + +0.3
433,493 + -0.1
433,512 - -0.7
433,528 + -0.1
433,528 + -0.7
433,529 - -0.9
433,650 - HMPREF1058_RS17465 0.11 +0.9
433,857 - HMPREF1058_RS17465 0.16 +0.6
433,882 - HMPREF1058_RS17465 0.17 +0.5
434,152 + HMPREF1058_RS17465 0.23 -0.6
434,153 - HMPREF1058_RS17465 0.23 +0.7
434,153 - HMPREF1058_RS17465 0.23 +0.0
434,164 + HMPREF1058_RS17465 0.23 -1.0
434,168 + HMPREF1058_RS17465 0.24 +0.6
434,168 + HMPREF1058_RS17465 0.24 -0.8
434,201 + HMPREF1058_RS17465 0.24 +0.2
434,201 + HMPREF1058_RS17465 0.24 +1.3
434,202 - HMPREF1058_RS17465 0.24 -1.8
434,202 - HMPREF1058_RS17465 0.24 +3.0
434,202 - HMPREF1058_RS17465 0.24 +1.5
434,202 - HMPREF1058_RS17465 0.24 -0.1
434,414 + HMPREF1058_RS17465 0.29 +0.4
434,594 - HMPREF1058_RS17465 0.34 +1.2
434,606 - HMPREF1058_RS17465 0.34 +1.3
434,609 + HMPREF1058_RS17465 0.34 +2.0
434,610 - HMPREF1058_RS17465 0.34 -1.5
434,610 - HMPREF1058_RS17465 0.34 -0.4
434,654 + HMPREF1058_RS17465 0.35 +0.4
434,657 - HMPREF1058_RS17465 0.35 +0.1
434,675 + HMPREF1058_RS17465 0.35 -0.1
434,676 - HMPREF1058_RS17465 0.35 +1.9
434,813 + HMPREF1058_RS17465 0.39 +0.0
434,813 + HMPREF1058_RS17465 0.39 -0.8
434,813 + HMPREF1058_RS17465 0.39 +0.8
434,814 - HMPREF1058_RS17465 0.39 +1.3
434,940 - HMPREF1058_RS17465 0.42 -0.5
434,940 - HMPREF1058_RS17465 0.42 -0.0
434,956 + HMPREF1058_RS17465 0.42 -0.3
435,014 + HMPREF1058_RS17465 0.43 -0.2
435,041 + HMPREF1058_RS17465 0.44 -0.1
435,243 - HMPREF1058_RS17465 0.49 -0.6
435,410 + HMPREF1058_RS17465 0.53 +0.3
435,411 - HMPREF1058_RS17465 0.53 +0.3
435,556 + HMPREF1058_RS17465 0.56 +0.3
435,765 - HMPREF1058_RS17465 0.61 -1.8
435,995 + HMPREF1058_RS17465 0.66 +1.2
435,995 + HMPREF1058_RS17465 0.66 -0.8
436,148 - HMPREF1058_RS17465 0.70 +0.9
436,170 - HMPREF1058_RS17465 0.70 +2.3
436,170 - HMPREF1058_RS17465 0.70 +2.3
436,198 + HMPREF1058_RS17465 0.71 +0.7
436,212 - HMPREF1058_RS17465 0.71 +0.4
436,266 - HMPREF1058_RS17465 0.73 +0.4
436,384 - HMPREF1058_RS17465 0.75 -0.1
436,428 + HMPREF1058_RS17465 0.76 -1.0
436,428 + HMPREF1058_RS17465 0.76 +1.7
436,429 - HMPREF1058_RS17465 0.76 -1.3
436,453 + HMPREF1058_RS17465 0.77 +0.5
436,453 + HMPREF1058_RS17465 0.77 +1.6
436,454 - HMPREF1058_RS17465 0.77 -1.1
436,541 - HMPREF1058_RS17465 0.79 +0.4
436,607 + HMPREF1058_RS17465 0.81 +0.7
436,607 + HMPREF1058_RS17465 0.81 +1.1
436,607 + HMPREF1058_RS17465 0.81 +0.3
436,608 - HMPREF1058_RS17465 0.81 -0.1
436,614 + HMPREF1058_RS17465 0.81 +0.3
436,614 + HMPREF1058_RS17465 0.81 -0.7
436,615 - HMPREF1058_RS17465 0.81 -0.5
436,615 - HMPREF1058_RS17465 0.81 -0.5
436,783 + HMPREF1058_RS17465 0.85 -1.8
436,783 + HMPREF1058_RS17465 0.85 +0.8
436,964 - HMPREF1058_RS17465 0.89 +0.2
436,964 - HMPREF1058_RS17465 0.89 +0.7
437,035 + +0.9
437,147 + -1.1
437,166 - +0.4
437,224 + -1.6
437,224 + -0.5
437,233 + -0.2
437,233 + +0.4
437,240 + +1.2
437,241 - -0.1
437,243 - -0.3
437,250 - +0.1
437,271 - +1.3
437,320 + +0.2
437,347 + +0.1
437,347 + +0.3
437,389 + -0.5
437,390 - -0.8
437,390 - -1.7
437,421 + +0.3
437,422 - +0.7
437,449 + -0.4
437,453 + +0.3
437,477 - -1.0
437,487 - -0.3
437,516 + +0.0
437,573 + +0.8
437,637 - -1.8
437,875 - -0.2
437,889 - +0.9
437,983 - HMPREF1058_RS17460 0.17 -1.0
438,036 + HMPREF1058_RS17460 0.26 -0.9
438,037 - HMPREF1058_RS17460 0.26 +1.0
438,046 + HMPREF1058_RS17460 0.27 -0.6
438,121 - HMPREF1058_RS17460 0.39 +1.2
438,126 + HMPREF1058_RS17460 0.40 +0.2
438,126 + HMPREF1058_RS17460 0.40 +0.3
438,126 + HMPREF1058_RS17460 0.40 -0.6
438,127 - +0.0
438,127 - HMPREF1058_RS17460 0.40 -0.0
438,127 - HMPREF1058_RS17460 0.40 -0.2
438,127 - HMPREF1058_RS17460 0.40 -0.7
438,158 + HMPREF1058_RS17460 0.45 +0.7
438,164 + HMPREF1058_RS17460 0.46 -0.1
438,167 - HMPREF1058_RS17460 0.47 -0.4
438,199 + HMPREF1058_RS17460 0.52 -0.9
438,201 + HMPREF1058_RS17460 0.52 +2.5
438,279 + HMPREF1058_RS17460 0.65 -0.6
438,279 + HMPREF1058_RS17460 0.65 +2.8
438,279 + HMPREF1058_RS17460 0.65 +1.2
438,279 + HMPREF1058_RS17460 0.65 -0.2
438,279 + HMPREF1058_RS17460 0.65 +0.1
438,280 - HMPREF1058_RS17460 0.65 -0.2
438,284 - HMPREF1058_RS17460 0.66 +0.3
438,288 - HMPREF1058_RS17460 0.67 -0.1
438,340 + HMPREF1058_RS17460 0.75 -2.8
438,387 - HMPREF1058_RS17460 0.83 +0.6

Or see this region's nucleotide sequence