Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16905 and HMPREF1058_RS16900 overlap by 4 nucleotides HMPREF1058_RS16900 and HMPREF1058_RS16895 are separated by 73 nucleotides HMPREF1058_RS16895 and HMPREF1058_RS16890 are separated by 70 nucleotides
HMPREF1058_RS16905: HMPREF1058_RS16905 - sigma-70 family RNA polymerase sigma factor, at 565,771 to 566,316
_RS16905
HMPREF1058_RS16900: HMPREF1058_RS16900 - hypothetical protein, at 566,313 to 566,690
_RS16900
HMPREF1058_RS16895: HMPREF1058_RS16895 - hypothetical protein, at 566,764 to 567,213
_RS16895
HMPREF1058_RS16890: HMPREF1058_RS16890 - hypothetical protein, at 567,284 to 568,276
_RS16890
Position (kb) 566
567
568 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 565.791 kb on + strand at 565.794 kb on + strand at 565.809 kb on - strand at 565.849 kb on + strand at 565.863 kb on - strand, within HMPREF1058_RS16905 at 565.875 kb on + strand, within HMPREF1058_RS16905 at 565.971 kb on + strand, within HMPREF1058_RS16905 at 565.981 kb on - strand, within HMPREF1058_RS16905 at 565.981 kb on - strand, within HMPREF1058_RS16905 at 565.990 kb on + strand, within HMPREF1058_RS16905 at 566.002 kb on + strand, within HMPREF1058_RS16905 at 566.003 kb on - strand, within HMPREF1058_RS16905 at 566.003 kb on - strand at 566.076 kb on + strand, within HMPREF1058_RS16905 at 566.076 kb on + strand, within HMPREF1058_RS16905 at 566.093 kb on + strand, within HMPREF1058_RS16905 at 566.093 kb on + strand, within HMPREF1058_RS16905 at 566.194 kb on + strand, within HMPREF1058_RS16905 at 566.262 kb on - strand at 566.288 kb on + strand at 566.291 kb on - strand at 566.293 kb on - strand at 566.293 kb on - strand at 566.294 kb on + strand at 566.295 kb on - strand at 566.413 kb on + strand, within HMPREF1058_RS16900 at 566.413 kb on + strand, within HMPREF1058_RS16900 at 566.423 kb on + strand, within HMPREF1058_RS16900 at 566.424 kb on - strand, within HMPREF1058_RS16900 at 566.425 kb on + strand, within HMPREF1058_RS16900 at 566.464 kb on + strand, within HMPREF1058_RS16900 at 566.464 kb on + strand, within HMPREF1058_RS16900 at 566.464 kb on + strand, within HMPREF1058_RS16900 at 566.469 kb on - strand, within HMPREF1058_RS16900 at 566.518 kb on - strand, within HMPREF1058_RS16900 at 566.549 kb on + strand, within HMPREF1058_RS16900 at 566.549 kb on + strand, within HMPREF1058_RS16900 at 566.554 kb on - strand, within HMPREF1058_RS16900 at 566.590 kb on + strand, within HMPREF1058_RS16900 at 566.623 kb on + strand, within HMPREF1058_RS16900 at 566.627 kb on + strand, within HMPREF1058_RS16900 at 566.628 kb on - strand, within HMPREF1058_RS16900 at 566.628 kb on - strand, within HMPREF1058_RS16900 at 566.710 kb on - strand at 566.710 kb on - strand at 566.710 kb on - strand at 566.754 kb on - strand at 566.754 kb on - strand at 566.766 kb on - strand at 566.839 kb on + strand, within HMPREF1058_RS16895 at 566.859 kb on - strand, within HMPREF1058_RS16895 at 566.912 kb on + strand, within HMPREF1058_RS16895 at 566.926 kb on - strand, within HMPREF1058_RS16895 at 566.926 kb on - strand, within HMPREF1058_RS16895 at 566.929 kb on + strand, within HMPREF1058_RS16895 at 566.929 kb on + strand, within HMPREF1058_RS16895 at 566.980 kb on + strand, within HMPREF1058_RS16895 at 566.981 kb on - strand, within HMPREF1058_RS16895 at 566.982 kb on + strand, within HMPREF1058_RS16895 at 566.993 kb on - strand, within HMPREF1058_RS16895 at 566.993 kb on - strand, within HMPREF1058_RS16895 at 567.016 kb on - strand, within HMPREF1058_RS16895 at 567.100 kb on - strand, within HMPREF1058_RS16895 at 567.148 kb on - strand, within HMPREF1058_RS16895 at 567.149 kb on + strand, within HMPREF1058_RS16895 at 567.149 kb on + strand, within HMPREF1058_RS16895 at 567.150 kb on - strand, within HMPREF1058_RS16895 at 567.150 kb on - strand, within HMPREF1058_RS16895 at 567.153 kb on + strand, within HMPREF1058_RS16895 at 567.154 kb on - strand, within HMPREF1058_RS16895 at 567.184 kb on - strand at 567.229 kb on - strand at 567.236 kb on - strand at 567.240 kb on - strand at 567.278 kb on + strand at 567.314 kb on + strand at 567.334 kb on + strand at 567.371 kb on + strand at 567.465 kb on + strand, within HMPREF1058_RS16890 at 567.466 kb on - strand, within HMPREF1058_RS16890 at 567.466 kb on - strand, within HMPREF1058_RS16890 at 567.467 kb on + strand, within HMPREF1058_RS16890 at 567.468 kb on - strand, within HMPREF1058_RS16890 at 567.468 kb on - strand, within HMPREF1058_RS16890 at 567.478 kb on + strand, within HMPREF1058_RS16890 at 567.519 kb on + strand, within HMPREF1058_RS16890 at 567.520 kb on - strand, within HMPREF1058_RS16890 at 567.540 kb on + strand, within HMPREF1058_RS16890 at 567.571 kb on - strand, within HMPREF1058_RS16890 at 567.572 kb on + strand, within HMPREF1058_RS16890 at 567.572 kb on + strand, within HMPREF1058_RS16890 at 567.572 kb on + strand, within HMPREF1058_RS16890 at 567.573 kb on - strand, within HMPREF1058_RS16890 at 567.596 kb on - strand, within HMPREF1058_RS16890 at 567.654 kb on - strand, within HMPREF1058_RS16890 at 567.661 kb on + strand, within HMPREF1058_RS16890 at 567.661 kb on + strand, within HMPREF1058_RS16890 at 567.719 kb on + strand, within HMPREF1058_RS16890 at 567.720 kb on - strand, within HMPREF1058_RS16890 at 567.781 kb on + strand, within HMPREF1058_RS16890 at 567.783 kb on + strand, within HMPREF1058_RS16890 at 567.783 kb on + strand, within HMPREF1058_RS16890 at 567.783 kb on + strand, within HMPREF1058_RS16890 at 567.783 kb on + strand, within HMPREF1058_RS16890 at 567.784 kb on - strand, within HMPREF1058_RS16890 at 567.784 kb on - strand, within HMPREF1058_RS16890 at 567.785 kb on + strand, within HMPREF1058_RS16890 at 567.786 kb on - strand, within HMPREF1058_RS16890 at 567.786 kb on - strand, within HMPREF1058_RS16890 at 567.790 kb on + strand, within HMPREF1058_RS16890 at 567.803 kb on + strand, within HMPREF1058_RS16890 at 567.805 kb on + strand, within HMPREF1058_RS16890 at 567.805 kb on + strand, within HMPREF1058_RS16890 at 567.805 kb on + strand, within HMPREF1058_RS16890 at 567.816 kb on - strand, within HMPREF1058_RS16890 at 567.824 kb on + strand, within HMPREF1058_RS16890 at 567.824 kb on + strand, within HMPREF1058_RS16890 at 567.824 kb on + strand, within HMPREF1058_RS16890 at 567.874 kb on + strand, within HMPREF1058_RS16890 at 567.897 kb on - strand, within HMPREF1058_RS16890 at 568.003 kb on + strand, within HMPREF1058_RS16890 at 568.037 kb on - strand, within HMPREF1058_RS16890 at 568.095 kb on - strand, within HMPREF1058_RS16890 at 568.095 kb on - strand, within HMPREF1058_RS16890 at 568.095 kb on - strand, within HMPREF1058_RS16890 at 568.106 kb on - strand, within HMPREF1058_RS16890 at 568.129 kb on + strand, within HMPREF1058_RS16890 at 568.129 kb on + strand, within HMPREF1058_RS16890 at 568.129 kb on + strand, within HMPREF1058_RS16890 at 568.130 kb on - strand, within HMPREF1058_RS16890 at 568.130 kb on - strand, within HMPREF1058_RS16890
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 565,791 + -0.2 565,794 + +0.3 565,809 - +2.3 565,849 + -0.2 565,863 - HMPREF1058_RS16905 0.17 +0.3 565,875 + HMPREF1058_RS16905 0.19 +2.3 565,971 + HMPREF1058_RS16905 0.37 -0.5 565,981 - HMPREF1058_RS16905 0.38 +0.4 565,981 - HMPREF1058_RS16905 0.38 -0.4 565,990 + HMPREF1058_RS16905 0.40 -0.5 566,002 + HMPREF1058_RS16905 0.42 -1.5 566,003 - HMPREF1058_RS16905 0.42 -1.7 566,003 - -0.5 566,076 + HMPREF1058_RS16905 0.56 +1.1 566,076 + HMPREF1058_RS16905 0.56 -0.0 566,093 + HMPREF1058_RS16905 0.59 -0.1 566,093 + HMPREF1058_RS16905 0.59 -1.0 566,194 + HMPREF1058_RS16905 0.77 +0.4 566,262 - +0.7 566,288 + +0.1 566,291 - -1.2 566,293 - -0.3 566,293 - -0.4 566,294 + +0.6 566,295 - -0.8 566,413 + HMPREF1058_RS16900 0.26 -1.4 566,413 + HMPREF1058_RS16900 0.26 -3.8 566,423 + HMPREF1058_RS16900 0.29 -0.1 566,424 - HMPREF1058_RS16900 0.29 -0.8 566,425 + HMPREF1058_RS16900 0.30 -2.2 566,464 + HMPREF1058_RS16900 0.40 +0.8 566,464 + HMPREF1058_RS16900 0.40 -0.6 566,464 + HMPREF1058_RS16900 0.40 -1.1 566,469 - HMPREF1058_RS16900 0.41 -1.7 566,518 - HMPREF1058_RS16900 0.54 -0.7 566,549 + HMPREF1058_RS16900 0.62 -1.8 566,549 + HMPREF1058_RS16900 0.62 -3.4 566,554 - HMPREF1058_RS16900 0.64 -3.0 566,590 + HMPREF1058_RS16900 0.73 -3.2 566,623 + HMPREF1058_RS16900 0.82 -3.2 566,627 + HMPREF1058_RS16900 0.83 -1.6 566,628 - HMPREF1058_RS16900 0.83 -0.7 566,628 - HMPREF1058_RS16900 0.83 -0.7 566,710 - -0.6 566,710 - -0.7 566,710 - -2.0 566,754 - -1.8 566,754 - +0.8 566,766 - -0.9 566,839 + HMPREF1058_RS16895 0.17 -1.8 566,859 - HMPREF1058_RS16895 0.21 +0.9 566,912 + HMPREF1058_RS16895 0.33 +1.1 566,926 - HMPREF1058_RS16895 0.36 +0.7 566,926 - HMPREF1058_RS16895 0.36 -0.2 566,929 + HMPREF1058_RS16895 0.37 +0.5 566,929 + HMPREF1058_RS16895 0.37 +2.6 566,980 + HMPREF1058_RS16895 0.48 -0.5 566,981 - HMPREF1058_RS16895 0.48 +0.2 566,982 + HMPREF1058_RS16895 0.48 +0.6 566,993 - HMPREF1058_RS16895 0.51 +1.0 566,993 - HMPREF1058_RS16895 0.51 +1.8 567,016 - HMPREF1058_RS16895 0.56 +1.5 567,100 - HMPREF1058_RS16895 0.75 -0.5 567,148 - HMPREF1058_RS16895 0.85 +0.3 567,149 + HMPREF1058_RS16895 0.86 +1.0 567,149 + HMPREF1058_RS16895 0.86 +0.4 567,150 - HMPREF1058_RS16895 0.86 -0.6 567,150 - HMPREF1058_RS16895 0.86 +0.2 567,153 + HMPREF1058_RS16895 0.86 +1.3 567,154 - HMPREF1058_RS16895 0.87 +0.4 567,184 - +0.3 567,229 - +0.7 567,236 - -0.6 567,240 - -1.9 567,278 + -0.2 567,314 + +0.9 567,334 + -0.1 567,371 + -0.2 567,465 + HMPREF1058_RS16890 0.18 +0.2 567,466 - HMPREF1058_RS16890 0.18 -1.3 567,466 - HMPREF1058_RS16890 0.18 +0.4 567,467 + HMPREF1058_RS16890 0.18 -2.3 567,468 - HMPREF1058_RS16890 0.19 -1.5 567,468 - HMPREF1058_RS16890 0.19 +0.0 567,478 + HMPREF1058_RS16890 0.20 -0.3 567,519 + HMPREF1058_RS16890 0.24 -1.8 567,520 - HMPREF1058_RS16890 0.24 +0.2 567,540 + HMPREF1058_RS16890 0.26 -1.2 567,571 - HMPREF1058_RS16890 0.29 +0.5 567,572 + HMPREF1058_RS16890 0.29 -0.5 567,572 + HMPREF1058_RS16890 0.29 -1.8 567,572 + HMPREF1058_RS16890 0.29 -0.9 567,573 - HMPREF1058_RS16890 0.29 +0.9 567,596 - HMPREF1058_RS16890 0.31 +0.3 567,654 - HMPREF1058_RS16890 0.37 -0.5 567,661 + HMPREF1058_RS16890 0.38 +0.1 567,661 + HMPREF1058_RS16890 0.38 -0.2 567,719 + HMPREF1058_RS16890 0.44 -1.9 567,720 - HMPREF1058_RS16890 0.44 -0.0 567,781 + HMPREF1058_RS16890 0.50 -1.3 567,783 + HMPREF1058_RS16890 0.50 -1.4 567,783 + HMPREF1058_RS16890 0.50 -0.8 567,783 + HMPREF1058_RS16890 0.50 +0.4 567,783 + HMPREF1058_RS16890 0.50 -0.6 567,784 - HMPREF1058_RS16890 0.50 -0.1 567,784 - HMPREF1058_RS16890 0.50 -0.1 567,785 + HMPREF1058_RS16890 0.50 +0.7 567,786 - HMPREF1058_RS16890 0.51 +0.5 567,786 - HMPREF1058_RS16890 0.51 +0.4 567,790 + HMPREF1058_RS16890 0.51 -1.1 567,803 + HMPREF1058_RS16890 0.52 -1.5 567,805 + HMPREF1058_RS16890 0.52 +0.4 567,805 + HMPREF1058_RS16890 0.52 +0.6 567,805 + HMPREF1058_RS16890 0.52 -1.4 567,816 - HMPREF1058_RS16890 0.54 -0.3 567,824 + HMPREF1058_RS16890 0.54 -1.4 567,824 + HMPREF1058_RS16890 0.54 -1.5 567,824 + HMPREF1058_RS16890 0.54 -0.4 567,874 + HMPREF1058_RS16890 0.59 -0.4 567,897 - HMPREF1058_RS16890 0.62 -0.6 568,003 + HMPREF1058_RS16890 0.72 +0.3 568,037 - HMPREF1058_RS16890 0.76 +0.5 568,095 - HMPREF1058_RS16890 0.82 +1.3 568,095 - HMPREF1058_RS16890 0.82 +0.4 568,095 - HMPREF1058_RS16890 0.82 -1.7 568,106 - HMPREF1058_RS16890 0.83 +0.1 568,129 + HMPREF1058_RS16890 0.85 -1.6 568,129 + HMPREF1058_RS16890 0.85 -0.1 568,129 + HMPREF1058_RS16890 0.85 +0.1 568,130 - HMPREF1058_RS16890 0.85 +0.1 568,130 - HMPREF1058_RS16890 0.85 -1.0
Or see this region's nucleotide sequence