Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16530 and HMPREF1058_RS16525 overlap by 1 nucleotides HMPREF1058_RS16525 and HMPREF1058_RS16520 are separated by 2 nucleotides HMPREF1058_RS16520 and HMPREF1058_RS16515 are separated by 45 nucleotides HMPREF1058_RS16515 and HMPREF1058_RS16510 are separated by 156 nucleotides HMPREF1058_RS16510 and HMPREF1058_RS16505 are separated by 102 nucleotides
HMPREF1058_RS16530: HMPREF1058_RS16530 - Rossmann-like and DUF2520 domain-containing protein, at 651,132 to 651,938
_RS16530
HMPREF1058_RS16525: HMPREF1058_RS16525 - hypothetical protein, at 651,938 to 652,264
_RS16525
HMPREF1058_RS16520: HMPREF1058_RS16520 - nitroreductase family protein, at 652,267 to 652,803
_RS16520
HMPREF1058_RS16515: HMPREF1058_RS16515 - GNAT family N-acetyltransferase, at 652,849 to 653,871
_RS16515
HMPREF1058_RS16510: HMPREF1058_RS16510 - methylmalonyl-CoA epimerase, at 654,028 to 654,441
_RS16510
HMPREF1058_RS16505: HMPREF1058_RS16505 - acyl-CoA carboxylase subunit beta, at 654,544 to 656,097
_RS16505
Position (kb) 652
653
654 Strain fitness (log2 ratio) -2
-1
0
1
2 at 651.853 kb on - strand, within HMPREF1058_RS16530 at 652.026 kb on - strand, within HMPREF1058_RS16525 at 652.056 kb on - strand, within HMPREF1058_RS16525 at 652.056 kb on - strand, within HMPREF1058_RS16525 at 652.120 kb on - strand, within HMPREF1058_RS16525 at 652.236 kb on + strand at 652.237 kb on - strand at 652.237 kb on - strand at 652.241 kb on - strand at 652.363 kb on - strand, within HMPREF1058_RS16520 at 652.405 kb on - strand, within HMPREF1058_RS16520 at 652.405 kb on - strand at 652.571 kb on - strand, within HMPREF1058_RS16520 at 652.579 kb on - strand, within HMPREF1058_RS16520 at 652.678 kb on - strand, within HMPREF1058_RS16520 at 652.724 kb on - strand, within HMPREF1058_RS16520 at 652.807 kb on - strand at 652.807 kb on - strand at 652.807 kb on - strand at 652.807 kb on - strand at 652.840 kb on - strand at 652.846 kb on - strand at 652.886 kb on + strand at 652.965 kb on + strand, within HMPREF1058_RS16515 at 653.031 kb on - strand, within HMPREF1058_RS16515 at 653.155 kb on - strand, within HMPREF1058_RS16515 at 653.281 kb on + strand, within HMPREF1058_RS16515 at 653.307 kb on - strand, within HMPREF1058_RS16515 at 653.511 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.614 kb on + strand, within HMPREF1058_RS16515 at 653.634 kb on + strand, within HMPREF1058_RS16515 at 653.647 kb on + strand, within HMPREF1058_RS16515 at 653.688 kb on + strand, within HMPREF1058_RS16515 at 653.689 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.775 kb on + strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.919 kb on - strand at 653.997 kb on + strand at 654.011 kb on - strand at 654.108 kb on - strand, within HMPREF1058_RS16510 at 654.122 kb on - strand, within HMPREF1058_RS16510 at 654.173 kb on + strand, within HMPREF1058_RS16510 at 654.173 kb on + strand, within HMPREF1058_RS16510 at 654.204 kb on + strand, within HMPREF1058_RS16510 at 654.204 kb on + strand, within HMPREF1058_RS16510 at 654.478 kb on + strand at 654.478 kb on + strand at 654.479 kb on - strand at 654.499 kb on - strand at 654.540 kb on + strand at 654.541 kb on - strand at 654.640 kb on - strand at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.795 kb on - strand, within HMPREF1058_RS16505
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 651,853 - HMPREF1058_RS16530 0.89 -1.4 652,026 - HMPREF1058_RS16525 0.27 +1.5 652,056 - HMPREF1058_RS16525 0.36 +1.7 652,056 - HMPREF1058_RS16525 0.36 +0.4 652,120 - HMPREF1058_RS16525 0.56 +0.1 652,236 + +0.7 652,237 - -0.4 652,237 - +0.1 652,241 - -0.3 652,363 - HMPREF1058_RS16520 0.18 +0.3 652,405 - HMPREF1058_RS16520 0.26 +0.3 652,405 - +0.3 652,571 - HMPREF1058_RS16520 0.57 -1.9 652,579 - HMPREF1058_RS16520 0.58 -0.8 652,678 - HMPREF1058_RS16520 0.77 -1.3 652,724 - HMPREF1058_RS16520 0.85 -0.7 652,807 - +0.3 652,807 - -1.8 652,807 - -0.2 652,807 - -0.2 652,840 - -1.1 652,846 - -1.1 652,886 + +1.5 652,965 + HMPREF1058_RS16515 0.11 +0.4 653,031 - HMPREF1058_RS16515 0.18 +0.2 653,155 - HMPREF1058_RS16515 0.30 +0.0 653,281 + HMPREF1058_RS16515 0.42 +1.9 653,307 - HMPREF1058_RS16515 0.45 -1.3 653,511 - HMPREF1058_RS16515 0.65 +0.5 653,587 - HMPREF1058_RS16515 0.72 -0.2 653,587 - HMPREF1058_RS16515 0.72 +0.5 653,614 + HMPREF1058_RS16515 0.75 +1.2 653,634 + HMPREF1058_RS16515 0.77 +0.5 653,647 + HMPREF1058_RS16515 0.78 -0.3 653,688 + HMPREF1058_RS16515 0.82 +1.5 653,689 - HMPREF1058_RS16515 0.82 +1.9 653,696 - HMPREF1058_RS16515 0.83 -0.1 653,696 - HMPREF1058_RS16515 0.83 -0.1 653,775 + +0.2 653,776 - -0.1 653,776 - +1.4 653,776 - +2.3 653,919 - -0.7 653,997 + +0.1 654,011 - -2.4 654,108 - HMPREF1058_RS16510 0.19 -1.1 654,122 - HMPREF1058_RS16510 0.23 -0.9 654,173 + HMPREF1058_RS16510 0.35 +0.5 654,173 + HMPREF1058_RS16510 0.35 -0.7 654,204 + HMPREF1058_RS16510 0.43 -0.3 654,204 + HMPREF1058_RS16510 0.43 -1.0 654,478 + +0.7 654,478 + -0.6 654,479 - -1.2 654,499 - -1.7 654,540 + +0.9 654,541 - -0.5 654,640 - -2.5 654,794 + HMPREF1058_RS16505 0.16 -1.2 654,794 + HMPREF1058_RS16505 0.16 -0.3 654,794 + HMPREF1058_RS16505 0.16 -2.6 654,795 - HMPREF1058_RS16505 0.16 -0.5
Or see this region's nucleotide sequence