Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15920 and HMPREF1058_RS15915 are separated by 22 nucleotides HMPREF1058_RS15915 and HMPREF1058_RS15910 are separated by 118 nucleotides HMPREF1058_RS15910 and HMPREF1058_RS15905 are separated by 3 nucleotides HMPREF1058_RS15905 and HMPREF1058_RS15900 are separated by 102 nucleotides
HMPREF1058_RS15920: HMPREF1058_RS15920 - hypothetical protein, at 808,762 to 808,989
_RS15920
HMPREF1058_RS15915: HMPREF1058_RS15915 - OmpH family outer membrane protein, at 809,012 to 809,626
_RS15915
HMPREF1058_RS15910: HMPREF1058_RS15910 - thioredoxin, at 809,745 to 810,041
_RS15910
HMPREF1058_RS15905: HMPREF1058_RS15905 - thioredoxin, at 810,045 to 810,503
_RS15905
HMPREF1058_RS15900: HMPREF1058_RS15900 - NADH peroxidase, at 810,606 to 811,157
_RS15900
Position (kb) 809
810
811 Strain fitness (log2 ratio) -2
-1
0
1
2 at 808.770 kb on + strand at 808.781 kb on + strand at 808.781 kb on + strand at 808.782 kb on - strand at 808.836 kb on - strand, within HMPREF1058_RS15920 at 808.872 kb on + strand, within HMPREF1058_RS15920 at 808.895 kb on + strand, within HMPREF1058_RS15920 at 808.895 kb on + strand at 808.896 kb on - strand, within HMPREF1058_RS15920 at 808.983 kb on + strand at 808.984 kb on - strand at 808.987 kb on + strand at 809.052 kb on + strand at 809.158 kb on - strand, within HMPREF1058_RS15915 at 809.163 kb on - strand, within HMPREF1058_RS15915 at 809.188 kb on + strand, within HMPREF1058_RS15915 at 809.257 kb on - strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.559 kb on - strand, within HMPREF1058_RS15915 at 809.602 kb on + strand at 809.603 kb on - strand at 809.628 kb on - strand at 809.644 kb on - strand at 809.644 kb on - strand at 809.645 kb on + strand at 809.646 kb on - strand at 809.646 kb on - strand at 809.646 kb on - strand at 809.650 kb on - strand at 809.701 kb on + strand at 809.702 kb on - strand at 809.714 kb on - strand at 809.717 kb on - strand at 809.718 kb on + strand at 809.890 kb on + strand, within HMPREF1058_RS15910 at 809.896 kb on + strand, within HMPREF1058_RS15910 at 809.897 kb on - strand, within HMPREF1058_RS15910 at 809.922 kb on + strand, within HMPREF1058_RS15910 at 809.922 kb on + strand, within HMPREF1058_RS15910 at 809.950 kb on + strand, within HMPREF1058_RS15910 at 809.951 kb on - strand, within HMPREF1058_RS15910 at 809.995 kb on + strand, within HMPREF1058_RS15910 at 810.013 kb on + strand at 810.033 kb on + strand at 810.034 kb on - strand at 810.065 kb on + strand at 810.066 kb on - strand at 810.066 kb on - strand at 810.066 kb on - strand at 810.074 kb on - strand at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.180 kb on - strand, within HMPREF1058_RS15905 at 810.182 kb on + strand, within HMPREF1058_RS15905 at 810.182 kb on + strand, within HMPREF1058_RS15905 at 810.183 kb on - strand, within HMPREF1058_RS15905 at 810.184 kb on + strand, within HMPREF1058_RS15905 at 810.193 kb on - strand, within HMPREF1058_RS15905 at 810.242 kb on + strand, within HMPREF1058_RS15905 at 810.253 kb on - strand, within HMPREF1058_RS15905 at 810.279 kb on - strand, within HMPREF1058_RS15905 at 810.343 kb on + strand, within HMPREF1058_RS15905 at 810.344 kb on - strand, within HMPREF1058_RS15905 at 810.344 kb on - strand, within HMPREF1058_RS15905 at 810.347 kb on + strand, within HMPREF1058_RS15905 at 810.367 kb on + strand, within HMPREF1058_RS15905 at 810.442 kb on + strand, within HMPREF1058_RS15905 at 810.442 kb on + strand, within HMPREF1058_RS15905 at 810.563 kb on + strand at 810.564 kb on - strand at 810.564 kb on - strand at 810.564 kb on - strand at 810.564 kb on - strand at 810.587 kb on - strand at 810.588 kb on + strand at 810.589 kb on - strand at 810.589 kb on - strand at 810.593 kb on + strand at 810.602 kb on + strand at 810.603 kb on - strand at 810.628 kb on + strand at 810.629 kb on - strand at 810.629 kb on - strand at 810.687 kb on - strand, within HMPREF1058_RS15900 at 810.795 kb on - strand, within HMPREF1058_RS15900 at 810.831 kb on - strand, within HMPREF1058_RS15900 at 810.929 kb on + strand, within HMPREF1058_RS15900 at 810.930 kb on - strand, within HMPREF1058_RS15900 at 810.941 kb on + strand, within HMPREF1058_RS15900 at 810.942 kb on - strand, within HMPREF1058_RS15900
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 808,770 + -0.4 808,781 + -1.9 808,781 + +0.8 808,782 - -1.2 808,836 - HMPREF1058_RS15920 0.32 -1.4 808,872 + HMPREF1058_RS15920 0.48 -1.3 808,895 + HMPREF1058_RS15920 0.58 -0.9 808,895 + -1.3 808,896 - HMPREF1058_RS15920 0.59 -0.3 808,983 + +0.3 808,984 - +1.5 808,987 + +0.7 809,052 + +0.9 809,158 - HMPREF1058_RS15915 0.24 +0.9 809,163 - HMPREF1058_RS15915 0.25 -1.1 809,188 + HMPREF1058_RS15915 0.29 +1.0 809,257 - HMPREF1058_RS15915 0.40 -0.1 809,521 + HMPREF1058_RS15915 0.83 +0.8 809,521 + HMPREF1058_RS15915 0.83 -1.7 809,521 + HMPREF1058_RS15915 0.83 -0.7 809,559 - HMPREF1058_RS15915 0.89 -1.2 809,602 + +1.9 809,603 - +0.2 809,628 - +0.6 809,644 - +1.9 809,644 - +0.5 809,645 + +2.5 809,646 - +2.4 809,646 - +0.8 809,646 - +1.3 809,650 - -0.1 809,701 + +0.6 809,702 - +1.3 809,714 - +1.4 809,717 - +1.3 809,718 + +0.1 809,890 + HMPREF1058_RS15910 0.49 +0.7 809,896 + HMPREF1058_RS15910 0.51 +0.9 809,897 - HMPREF1058_RS15910 0.51 -0.2 809,922 + HMPREF1058_RS15910 0.60 +0.3 809,922 + HMPREF1058_RS15910 0.60 -0.3 809,950 + HMPREF1058_RS15910 0.69 -1.8 809,951 - HMPREF1058_RS15910 0.69 +1.6 809,995 + HMPREF1058_RS15910 0.84 +1.2 810,013 + +1.4 810,033 + +1.1 810,034 - -0.4 810,065 + +0.1 810,066 - +1.0 810,066 - -0.5 810,066 - -0.3 810,074 - -0.8 810,155 + HMPREF1058_RS15905 0.24 +1.1 810,155 + HMPREF1058_RS15905 0.24 -0.4 810,155 + HMPREF1058_RS15905 0.24 -0.8 810,155 + HMPREF1058_RS15905 0.24 +0.5 810,155 + HMPREF1058_RS15905 0.24 -1.0 810,155 + HMPREF1058_RS15905 0.24 +0.1 810,155 + HMPREF1058_RS15905 0.24 -0.1 810,180 - HMPREF1058_RS15905 0.29 +0.1 810,182 + HMPREF1058_RS15905 0.30 -0.5 810,182 + HMPREF1058_RS15905 0.30 -0.6 810,183 - HMPREF1058_RS15905 0.30 -0.4 810,184 + HMPREF1058_RS15905 0.30 +1.1 810,193 - HMPREF1058_RS15905 0.32 +0.3 810,242 + HMPREF1058_RS15905 0.43 -1.1 810,253 - HMPREF1058_RS15905 0.45 +0.2 810,279 - HMPREF1058_RS15905 0.51 -0.2 810,343 + HMPREF1058_RS15905 0.65 +0.4 810,344 - HMPREF1058_RS15905 0.65 -0.3 810,344 - HMPREF1058_RS15905 0.65 +1.5 810,347 + HMPREF1058_RS15905 0.66 +0.1 810,367 + HMPREF1058_RS15905 0.70 +0.1 810,442 + HMPREF1058_RS15905 0.86 +0.2 810,442 + HMPREF1058_RS15905 0.86 +0.3 810,563 + -0.3 810,564 - -0.0 810,564 - +0.6 810,564 - +0.3 810,564 - -0.9 810,587 - +0.5 810,588 + +0.2 810,589 - -0.2 810,589 - +0.5 810,593 + +0.7 810,602 + -0.6 810,603 - -0.2 810,628 + +0.3 810,629 - +1.8 810,629 - -0.5 810,687 - HMPREF1058_RS15900 0.15 -0.3 810,795 - HMPREF1058_RS15900 0.34 -0.8 810,831 - HMPREF1058_RS15900 0.41 +0.1 810,929 + HMPREF1058_RS15900 0.59 -1.3 810,930 - HMPREF1058_RS15900 0.59 -0.5 810,941 + HMPREF1058_RS15900 0.61 -1.3 810,942 - HMPREF1058_RS15900 0.61 +0.5
Or see this region's nucleotide sequence