Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15750 and HMPREF1058_RS15745 are separated by 105 nucleotides HMPREF1058_RS15745 and HMPREF1058_RS15740 are separated by 155 nucleotides HMPREF1058_RS15740 and HMPREF1058_RS15735 are separated by 21 nucleotides HMPREF1058_RS15735 and HMPREF1058_RS15730 are separated by 7 nucleotides
HMPREF1058_RS15750: HMPREF1058_RS15750 - glucosaminidase domain-containing protein, at 845,393 to 846,289
_RS15750
HMPREF1058_RS15745: HMPREF1058_RS15745 - hypothetical protein, at 846,395 to 847,036
_RS15745
HMPREF1058_RS15740: HMPREF1058_RS15740 - hypothetical protein, at 847,192 to 847,740
_RS15740
HMPREF1058_RS15735: HMPREF1058_RS15735 - hypothetical protein, at 847,762 to 848,124
_RS15735
HMPREF1058_RS15730: HMPREF1058_RS15730 - RNA polymerase sigma factor, at 848,132 to 848,668
_RS15730
Position (kb) 847
848 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 846.235 kb on + strand at 846.239 kb on + strand at 846.239 kb on + strand at 846.266 kb on - strand at 846.289 kb on + strand at 846.292 kb on - strand at 846.316 kb on + strand at 846.316 kb on + strand at 846.317 kb on - strand at 846.330 kb on + strand at 846.331 kb on - strand at 846.331 kb on - strand at 846.331 kb on - strand at 846.332 kb on + strand at 846.333 kb on - strand at 846.333 kb on - strand at 846.333 kb on - strand at 846.335 kb on - strand at 846.383 kb on + strand at 846.454 kb on + strand at 846.470 kb on + strand, within HMPREF1058_RS15745 at 846.569 kb on - strand, within HMPREF1058_RS15745 at 846.570 kb on + strand, within HMPREF1058_RS15745 at 846.598 kb on + strand, within HMPREF1058_RS15745 at 846.694 kb on + strand, within HMPREF1058_RS15745 at 846.748 kb on + strand, within HMPREF1058_RS15745 at 846.829 kb on - strand, within HMPREF1058_RS15745 at 846.829 kb on - strand, within HMPREF1058_RS15745 at 846.851 kb on + strand, within HMPREF1058_RS15745 at 846.854 kb on + strand, within HMPREF1058_RS15745 at 846.872 kb on + strand, within HMPREF1058_RS15745 at 846.874 kb on + strand, within HMPREF1058_RS15745 at 846.874 kb on + strand, within HMPREF1058_RS15745 at 846.875 kb on - strand, within HMPREF1058_RS15745 at 846.924 kb on + strand, within HMPREF1058_RS15745 at 846.941 kb on + strand, within HMPREF1058_RS15745 at 846.946 kb on + strand, within HMPREF1058_RS15745 at 846.957 kb on + strand, within HMPREF1058_RS15745 at 846.957 kb on + strand, within HMPREF1058_RS15745 at 846.961 kb on + strand, within HMPREF1058_RS15745 at 846.961 kb on + strand, within HMPREF1058_RS15745 at 846.962 kb on - strand, within HMPREF1058_RS15745 at 846.989 kb on + strand at 847.063 kb on + strand at 847.066 kb on + strand at 847.066 kb on + strand at 847.067 kb on - strand at 847.067 kb on - strand at 847.088 kb on - strand at 847.193 kb on + strand at 847.219 kb on - strand at 847.306 kb on - strand, within HMPREF1058_RS15740 at 847.356 kb on - strand, within HMPREF1058_RS15740 at 847.356 kb on - strand, within HMPREF1058_RS15740 at 847.530 kb on - strand, within HMPREF1058_RS15740 at 847.591 kb on - strand, within HMPREF1058_RS15740 at 847.607 kb on - strand, within HMPREF1058_RS15740 at 847.996 kb on - strand, within HMPREF1058_RS15735 at 848.008 kb on - strand, within HMPREF1058_RS15735 at 848.074 kb on - strand, within HMPREF1058_RS15735 at 848.141 kb on + strand at 848.142 kb on - strand at 848.148 kb on + strand at 848.173 kb on - strand at 848.232 kb on + strand, within HMPREF1058_RS15730 at 848.247 kb on + strand, within HMPREF1058_RS15730 at 848.331 kb on + strand, within HMPREF1058_RS15730 at 848.332 kb on - strand, within HMPREF1058_RS15730 at 848.340 kb on + strand, within HMPREF1058_RS15730 at 848.360 kb on - strand, within HMPREF1058_RS15730 at 848.414 kb on - strand, within HMPREF1058_RS15730 at 848.553 kb on - strand, within HMPREF1058_RS15730 at 848.578 kb on - strand, within HMPREF1058_RS15730 at 848.580 kb on - strand, within HMPREF1058_RS15730 at 848.580 kb on - strand, within HMPREF1058_RS15730 at 848.611 kb on + strand, within HMPREF1058_RS15730 at 848.639 kb on + strand at 848.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 846,235 + +0.6 846,239 + -1.3 846,239 + -2.0 846,266 - -1.4 846,289 + -0.6 846,292 - +0.0 846,316 + -1.2 846,316 + -3.7 846,317 - -0.8 846,330 + -1.5 846,331 - +0.7 846,331 - -0.1 846,331 - -0.4 846,332 + -0.1 846,333 - -0.6 846,333 - -2.8 846,333 - -0.3 846,335 - +0.3 846,383 + -1.1 846,454 + +0.7 846,470 + HMPREF1058_RS15745 0.12 +0.6 846,569 - HMPREF1058_RS15745 0.27 -0.5 846,570 + HMPREF1058_RS15745 0.27 -0.1 846,598 + HMPREF1058_RS15745 0.32 -0.3 846,694 + HMPREF1058_RS15745 0.47 +0.6 846,748 + HMPREF1058_RS15745 0.55 +1.3 846,829 - HMPREF1058_RS15745 0.68 +0.9 846,829 - HMPREF1058_RS15745 0.68 -0.2 846,851 + HMPREF1058_RS15745 0.71 +0.7 846,854 + HMPREF1058_RS15745 0.71 -1.0 846,872 + HMPREF1058_RS15745 0.74 +0.5 846,874 + HMPREF1058_RS15745 0.75 -0.2 846,874 + HMPREF1058_RS15745 0.75 +0.4 846,875 - HMPREF1058_RS15745 0.75 +0.2 846,924 + HMPREF1058_RS15745 0.82 +0.9 846,941 + HMPREF1058_RS15745 0.85 +0.4 846,946 + HMPREF1058_RS15745 0.86 -0.4 846,957 + HMPREF1058_RS15745 0.88 +1.5 846,957 + HMPREF1058_RS15745 0.88 -0.3 846,961 + HMPREF1058_RS15745 0.88 +1.0 846,961 + HMPREF1058_RS15745 0.88 +1.5 846,962 - HMPREF1058_RS15745 0.88 -0.4 846,989 + +1.4 847,063 + +2.2 847,066 + +0.9 847,066 + +1.2 847,067 - -0.6 847,067 - +0.8 847,088 - +0.2 847,193 + -1.5 847,219 - +0.1 847,306 - HMPREF1058_RS15740 0.21 -2.0 847,356 - HMPREF1058_RS15740 0.30 +2.0 847,356 - HMPREF1058_RS15740 0.30 +1.2 847,530 - HMPREF1058_RS15740 0.62 +1.4 847,591 - HMPREF1058_RS15740 0.73 +2.0 847,607 - HMPREF1058_RS15740 0.76 +2.4 847,996 - HMPREF1058_RS15735 0.64 -0.0 848,008 - HMPREF1058_RS15735 0.68 -0.1 848,074 - HMPREF1058_RS15735 0.86 +1.3 848,141 + -0.3 848,142 - -0.2 848,148 + -0.8 848,173 - +4.8 848,232 + HMPREF1058_RS15730 0.19 +1.6 848,247 + HMPREF1058_RS15730 0.21 +1.0 848,331 + HMPREF1058_RS15730 0.37 -0.5 848,332 - HMPREF1058_RS15730 0.37 -0.1 848,340 + HMPREF1058_RS15730 0.39 -0.1 848,360 - HMPREF1058_RS15730 0.42 -0.3 848,414 - HMPREF1058_RS15730 0.53 -1.0 848,553 - HMPREF1058_RS15730 0.78 -2.2 848,578 - HMPREF1058_RS15730 0.83 -0.4 848,580 - HMPREF1058_RS15730 0.83 -2.0 848,580 - HMPREF1058_RS15730 0.83 -1.3 848,611 + HMPREF1058_RS15730 0.89 +0.4 848,639 + -1.3 848,640 - -1.8
Or see this region's nucleotide sequence