Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15340 and HMPREF1058_RS15335 are separated by 142 nucleotides HMPREF1058_RS15335 and HMPREF1058_RS15330 are separated by 35 nucleotides HMPREF1058_RS15330 and HMPREF1058_RS15325 are separated by 399 nucleotides
HMPREF1058_RS15340: HMPREF1058_RS15340 - OmpA family protein, at 945,013 to 946,149
_RS15340
HMPREF1058_RS15335: HMPREF1058_RS15335 - hypothetical protein, at 946,292 to 946,951
_RS15335
HMPREF1058_RS15330: HMPREF1058_RS15330 - helix-turn-helix transcriptional regulator, at 946,987 to 947,835
_RS15330
HMPREF1058_RS15325: HMPREF1058_RS15325 - BACON domain-containing protein, at 948,235 to 951,816
_RS15325
Position (kb) 946
947
948 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 946.126 kb on + strand at 946.126 kb on + strand at 946.127 kb on - strand at 946.198 kb on + strand at 946.199 kb on - strand at 946.200 kb on + strand at 946.201 kb on - strand at 946.289 kb on - strand at 946.342 kb on + strand at 946.365 kb on + strand, within HMPREF1058_RS15335 at 946.365 kb on + strand, within HMPREF1058_RS15335 at 946.434 kb on - strand, within HMPREF1058_RS15335 at 946.443 kb on - strand, within HMPREF1058_RS15335 at 946.465 kb on + strand, within HMPREF1058_RS15335 at 946.465 kb on + strand, within HMPREF1058_RS15335 at 946.580 kb on + strand, within HMPREF1058_RS15335 at 946.651 kb on + strand, within HMPREF1058_RS15335 at 946.652 kb on - strand, within HMPREF1058_RS15335 at 946.653 kb on + strand, within HMPREF1058_RS15335 at 946.654 kb on - strand, within HMPREF1058_RS15335 at 946.655 kb on + strand, within HMPREF1058_RS15335 at 946.655 kb on + strand, within HMPREF1058_RS15335 at 946.732 kb on + strand, within HMPREF1058_RS15335 at 946.732 kb on + strand, within HMPREF1058_RS15335 at 946.732 kb on + strand, within HMPREF1058_RS15335 at 946.733 kb on - strand, within HMPREF1058_RS15335 at 946.733 kb on - strand, within HMPREF1058_RS15335 at 946.783 kb on + strand, within HMPREF1058_RS15335 at 946.784 kb on - strand, within HMPREF1058_RS15335 at 946.788 kb on - strand, within HMPREF1058_RS15335 at 946.879 kb on + strand, within HMPREF1058_RS15335 at 946.880 kb on - strand, within HMPREF1058_RS15335 at 946.941 kb on - strand at 946.944 kb on + strand at 946.989 kb on - strand at 947.045 kb on + strand at 947.105 kb on - strand, within HMPREF1058_RS15330 at 947.226 kb on - strand, within HMPREF1058_RS15330 at 947.394 kb on + strand, within HMPREF1058_RS15330 at 947.394 kb on + strand, within HMPREF1058_RS15330 at 947.395 kb on - strand, within HMPREF1058_RS15330 at 947.395 kb on - strand, within HMPREF1058_RS15330 at 947.401 kb on - strand, within HMPREF1058_RS15330 at 947.408 kb on - strand, within HMPREF1058_RS15330 at 947.408 kb on - strand, within HMPREF1058_RS15330 at 947.540 kb on - strand, within HMPREF1058_RS15330 at 947.540 kb on - strand, within HMPREF1058_RS15330 at 947.540 kb on - strand, within HMPREF1058_RS15330 at 947.572 kb on - strand, within HMPREF1058_RS15330 at 947.658 kb on + strand, within HMPREF1058_RS15330 at 947.721 kb on + strand, within HMPREF1058_RS15330 at 947.737 kb on + strand, within HMPREF1058_RS15330 at 947.738 kb on - strand, within HMPREF1058_RS15330 at 947.766 kb on + strand at 947.871 kb on + strand at 947.871 kb on + strand at 947.872 kb on - strand at 947.961 kb on + strand at 947.962 kb on - strand at 947.976 kb on + strand at 947.995 kb on + strand at 947.996 kb on - strand at 948.036 kb on + strand at 948.037 kb on - strand at 948.047 kb on - strand at 948.068 kb on - strand at 948.124 kb on - strand at 948.128 kb on - strand at 948.139 kb on - strand at 948.139 kb on - strand at 948.140 kb on + strand at 948.140 kb on + strand at 948.230 kb on - strand at 948.331 kb on - strand at 948.521 kb on + strand at 948.522 kb on - strand at 948.701 kb on + strand, within HMPREF1058_RS15325 at 948.701 kb on + strand, within HMPREF1058_RS15325
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 946,126 + -0.2 946,126 + +0.8 946,127 - -0.1 946,198 + +0.8 946,199 - -1.3 946,200 + -0.2 946,201 - +0.1 946,289 - -1.6 946,342 + -1.7 946,365 + HMPREF1058_RS15335 0.11 -1.8 946,365 + HMPREF1058_RS15335 0.11 +3.3 946,434 - HMPREF1058_RS15335 0.22 -0.3 946,443 - HMPREF1058_RS15335 0.23 -0.1 946,465 + HMPREF1058_RS15335 0.26 +0.6 946,465 + HMPREF1058_RS15335 0.26 +0.4 946,580 + HMPREF1058_RS15335 0.44 -1.5 946,651 + HMPREF1058_RS15335 0.54 -0.2 946,652 - HMPREF1058_RS15335 0.55 -1.4 946,653 + HMPREF1058_RS15335 0.55 -0.6 946,654 - HMPREF1058_RS15335 0.55 -0.5 946,655 + HMPREF1058_RS15335 0.55 -0.9 946,655 + HMPREF1058_RS15335 0.55 -1.6 946,732 + HMPREF1058_RS15335 0.67 +1.8 946,732 + HMPREF1058_RS15335 0.67 -0.9 946,732 + HMPREF1058_RS15335 0.67 +0.1 946,733 - HMPREF1058_RS15335 0.67 +0.2 946,733 - HMPREF1058_RS15335 0.67 -1.1 946,783 + HMPREF1058_RS15335 0.74 -0.4 946,784 - HMPREF1058_RS15335 0.75 -0.5 946,788 - HMPREF1058_RS15335 0.75 +0.1 946,879 + HMPREF1058_RS15335 0.89 -1.6 946,880 - HMPREF1058_RS15335 0.89 +1.0 946,941 - -1.9 946,944 + +0.2 946,989 - +2.3 947,045 + -0.3 947,105 - HMPREF1058_RS15330 0.14 +1.1 947,226 - HMPREF1058_RS15330 0.28 +0.7 947,394 + HMPREF1058_RS15330 0.48 -0.7 947,394 + HMPREF1058_RS15330 0.48 -1.7 947,395 - HMPREF1058_RS15330 0.48 +0.9 947,395 - HMPREF1058_RS15330 0.48 +1.6 947,401 - HMPREF1058_RS15330 0.49 +2.3 947,408 - HMPREF1058_RS15330 0.50 +1.6 947,408 - HMPREF1058_RS15330 0.50 +4.0 947,540 - HMPREF1058_RS15330 0.65 +5.4 947,540 - HMPREF1058_RS15330 0.65 -2.0 947,540 - HMPREF1058_RS15330 0.65 +3.0 947,572 - HMPREF1058_RS15330 0.69 +1.1 947,658 + HMPREF1058_RS15330 0.79 +0.6 947,721 + HMPREF1058_RS15330 0.86 -0.7 947,737 + HMPREF1058_RS15330 0.88 +0.1 947,738 - HMPREF1058_RS15330 0.88 +1.5 947,766 + +0.8 947,871 + -0.3 947,871 + +4.6 947,872 - +1.9 947,961 + -0.6 947,962 - +1.9 947,976 + +0.3 947,995 + -0.1 947,996 - -0.8 948,036 + -0.3 948,037 - +0.1 948,047 - +1.7 948,068 - +1.8 948,124 - +3.1 948,128 - +3.6 948,139 - +0.9 948,139 - +1.9 948,140 + -0.7 948,140 + -0.2 948,230 - +3.7 948,331 - +3.6 948,521 + -0.1 948,522 - +2.8 948,701 + HMPREF1058_RS15325 0.13 -1.9 948,701 + HMPREF1058_RS15325 0.13 -0.7
Or see this region's nucleotide sequence