Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15330 and HMPREF1058_RS15325 are separated by 399 nucleotides HMPREF1058_RS15325 and HMPREF1058_RS15320 are separated by 57 nucleotides
HMPREF1058_RS15330: HMPREF1058_RS15330 - helix-turn-helix transcriptional regulator, at 946,987 to 947,835
_RS15330
HMPREF1058_RS15325: HMPREF1058_RS15325 - BACON domain-containing protein, at 948,235 to 951,816
_RS15325
HMPREF1058_RS15320: HMPREF1058_RS15320 - hypothetical protein, at 951,874 to 953,127
_RS15320
Position (kb) 948
949
950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 947.394 kb on + strand, within HMPREF1058_RS15330 at 947.394 kb on + strand, within HMPREF1058_RS15330 at 947.395 kb on - strand, within HMPREF1058_RS15330 at 947.395 kb on - strand, within HMPREF1058_RS15330 at 947.401 kb on - strand, within HMPREF1058_RS15330 at 947.408 kb on - strand, within HMPREF1058_RS15330 at 947.408 kb on - strand, within HMPREF1058_RS15330 at 947.540 kb on - strand, within HMPREF1058_RS15330 at 947.540 kb on - strand, within HMPREF1058_RS15330 at 947.540 kb on - strand, within HMPREF1058_RS15330 at 947.572 kb on - strand, within HMPREF1058_RS15330 at 947.658 kb on + strand, within HMPREF1058_RS15330 at 947.721 kb on + strand, within HMPREF1058_RS15330 at 947.737 kb on + strand, within HMPREF1058_RS15330 at 947.738 kb on - strand, within HMPREF1058_RS15330 at 947.766 kb on + strand at 947.871 kb on + strand at 947.871 kb on + strand at 947.872 kb on - strand at 947.961 kb on + strand at 947.962 kb on - strand at 947.976 kb on + strand at 947.995 kb on + strand at 947.996 kb on - strand at 948.036 kb on + strand at 948.037 kb on - strand at 948.047 kb on - strand at 948.068 kb on - strand at 948.124 kb on - strand at 948.128 kb on - strand at 948.139 kb on - strand at 948.139 kb on - strand at 948.140 kb on + strand at 948.140 kb on + strand at 948.230 kb on - strand at 948.331 kb on - strand at 948.521 kb on + strand at 948.522 kb on - strand at 948.701 kb on + strand, within HMPREF1058_RS15325 at 948.701 kb on + strand, within HMPREF1058_RS15325 at 948.959 kb on + strand at 948.960 kb on - strand, within HMPREF1058_RS15325 at 948.960 kb on - strand, within HMPREF1058_RS15325 at 949.132 kb on + strand, within HMPREF1058_RS15325 at 949.169 kb on + strand, within HMPREF1058_RS15325 at 949.170 kb on - strand, within HMPREF1058_RS15325 at 949.173 kb on + strand, within HMPREF1058_RS15325 at 949.174 kb on - strand, within HMPREF1058_RS15325 at 949.174 kb on - strand, within HMPREF1058_RS15325 at 949.175 kb on + strand, within HMPREF1058_RS15325 at 949.232 kb on - strand, within HMPREF1058_RS15325 at 949.318 kb on - strand, within HMPREF1058_RS15325 at 949.329 kb on + strand, within HMPREF1058_RS15325 at 949.384 kb on - strand, within HMPREF1058_RS15325 at 949.386 kb on + strand, within HMPREF1058_RS15325 at 949.386 kb on + strand, within HMPREF1058_RS15325 at 949.387 kb on - strand, within HMPREF1058_RS15325 at 949.387 kb on - strand, within HMPREF1058_RS15325 at 949.398 kb on - strand, within HMPREF1058_RS15325 at 949.453 kb on - strand, within HMPREF1058_RS15325 at 949.458 kb on + strand, within HMPREF1058_RS15325 at 949.459 kb on - strand, within HMPREF1058_RS15325 at 949.460 kb on + strand, within HMPREF1058_RS15325 at 949.464 kb on + strand, within HMPREF1058_RS15325 at 949.465 kb on - strand, within HMPREF1058_RS15325 at 949.601 kb on - strand, within HMPREF1058_RS15325 at 949.643 kb on + strand, within HMPREF1058_RS15325 at 949.643 kb on + strand, within HMPREF1058_RS15325 at 949.644 kb on - strand, within HMPREF1058_RS15325 at 949.653 kb on + strand, within HMPREF1058_RS15325 at 949.736 kb on + strand, within HMPREF1058_RS15325 at 949.737 kb on - strand, within HMPREF1058_RS15325 at 949.737 kb on - strand, within HMPREF1058_RS15325 at 949.739 kb on + strand, within HMPREF1058_RS15325 at 949.740 kb on - strand, within HMPREF1058_RS15325 at 949.740 kb on - strand, within HMPREF1058_RS15325 at 949.766 kb on + strand, within HMPREF1058_RS15325 at 949.770 kb on + strand, within HMPREF1058_RS15325 at 949.770 kb on + strand, within HMPREF1058_RS15325 at 949.771 kb on - strand, within HMPREF1058_RS15325 at 949.830 kb on + strand, within HMPREF1058_RS15325 at 949.831 kb on - strand, within HMPREF1058_RS15325 at 949.904 kb on + strand at 950.006 kb on - strand, within HMPREF1058_RS15325 at 950.006 kb on - strand, within HMPREF1058_RS15325 at 950.011 kb on - strand, within HMPREF1058_RS15325 at 950.073 kb on - strand, within HMPREF1058_RS15325 at 950.420 kb on - strand, within HMPREF1058_RS15325 at 950.424 kb on + strand, within HMPREF1058_RS15325 at 950.424 kb on + strand, within HMPREF1058_RS15325 at 950.425 kb on - strand, within HMPREF1058_RS15325 at 950.425 kb on - strand, within HMPREF1058_RS15325 at 950.425 kb on - strand, within HMPREF1058_RS15325 at 950.550 kb on + strand, within HMPREF1058_RS15325 at 950.550 kb on + strand, within HMPREF1058_RS15325 at 950.550 kb on + strand, within HMPREF1058_RS15325 at 950.551 kb on - strand, within HMPREF1058_RS15325 at 950.551 kb on - strand, within HMPREF1058_RS15325 at 950.552 kb on + strand, within HMPREF1058_RS15325 at 950.552 kb on + strand, within HMPREF1058_RS15325 at 950.553 kb on - strand, within HMPREF1058_RS15325 at 950.553 kb on - strand, within HMPREF1058_RS15325 at 950.553 kb on - strand, within HMPREF1058_RS15325 at 950.553 kb on - strand, within HMPREF1058_RS15325 at 950.564 kb on + strand, within HMPREF1058_RS15325 at 950.565 kb on - strand, within HMPREF1058_RS15325 at 950.569 kb on + strand, within HMPREF1058_RS15325 at 950.570 kb on - strand, within HMPREF1058_RS15325 at 950.721 kb on - strand, within HMPREF1058_RS15325 at 950.726 kb on + strand, within HMPREF1058_RS15325 at 950.727 kb on - strand, within HMPREF1058_RS15325 at 950.727 kb on - strand, within HMPREF1058_RS15325 at 950.830 kb on - strand, within HMPREF1058_RS15325 at 950.859 kb on + strand, within HMPREF1058_RS15325 at 950.860 kb on - strand, within HMPREF1058_RS15325 at 950.931 kb on - strand, within HMPREF1058_RS15325 at 950.933 kb on - strand, within HMPREF1058_RS15325 at 950.976 kb on + strand, within HMPREF1058_RS15325 at 951.015 kb on + strand, within HMPREF1058_RS15325 at 951.016 kb on - strand, within HMPREF1058_RS15325 at 951.016 kb on - strand, within HMPREF1058_RS15325 at 951.037 kb on - strand, within HMPREF1058_RS15325 at 951.054 kb on - strand, within HMPREF1058_RS15325 at 951.096 kb on + strand, within HMPREF1058_RS15325 at 951.100 kb on - strand, within HMPREF1058_RS15325 at 951.101 kb on + strand, within HMPREF1058_RS15325 at 951.115 kb on - strand, within HMPREF1058_RS15325 at 951.228 kb on - strand, within HMPREF1058_RS15325 at 951.402 kb on + strand, within HMPREF1058_RS15325 at 951.578 kb on - strand at 951.582 kb on + strand at 951.772 kb on + strand at 951.773 kb on - strand at 951.801 kb on - strand at 951.816 kb on + strand at 951.820 kb on + strand at 951.821 kb on - strand at 951.825 kb on - strand at 951.867 kb on - strand at 951.867 kb on - strand at 951.872 kb on - strand at 951.927 kb on - strand at 952.003 kb on - strand, within HMPREF1058_RS15320 at 952.133 kb on - strand, within HMPREF1058_RS15320 at 952.136 kb on + strand, within HMPREF1058_RS15320 at 952.136 kb on + strand, within HMPREF1058_RS15320 at 952.142 kb on + strand, within HMPREF1058_RS15320 at 952.143 kb on - strand, within HMPREF1058_RS15320 at 952.300 kb on - strand, within HMPREF1058_RS15320 at 952.464 kb on + strand, within HMPREF1058_RS15320 at 952.465 kb on - strand, within HMPREF1058_RS15320 at 952.501 kb on - strand, within HMPREF1058_RS15320 at 952.698 kb on - strand, within HMPREF1058_RS15320 at 952.730 kb on - strand, within HMPREF1058_RS15320 at 952.730 kb on - strand, within HMPREF1058_RS15320 at 952.760 kb on - strand, within HMPREF1058_RS15320 at 952.760 kb on - strand, within HMPREF1058_RS15320 at 952.795 kb on - strand, within HMPREF1058_RS15320
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 947,394 + HMPREF1058_RS15330 0.48 -0.7 947,394 + HMPREF1058_RS15330 0.48 -1.7 947,395 - HMPREF1058_RS15330 0.48 +0.9 947,395 - HMPREF1058_RS15330 0.48 +1.6 947,401 - HMPREF1058_RS15330 0.49 +2.3 947,408 - HMPREF1058_RS15330 0.50 +1.6 947,408 - HMPREF1058_RS15330 0.50 +4.0 947,540 - HMPREF1058_RS15330 0.65 +5.4 947,540 - HMPREF1058_RS15330 0.65 -2.0 947,540 - HMPREF1058_RS15330 0.65 +3.0 947,572 - HMPREF1058_RS15330 0.69 +1.1 947,658 + HMPREF1058_RS15330 0.79 +0.6 947,721 + HMPREF1058_RS15330 0.86 -0.7 947,737 + HMPREF1058_RS15330 0.88 +0.1 947,738 - HMPREF1058_RS15330 0.88 +1.5 947,766 + +0.8 947,871 + -0.3 947,871 + +4.6 947,872 - +1.9 947,961 + -0.6 947,962 - +1.9 947,976 + +0.3 947,995 + -0.1 947,996 - -0.8 948,036 + -0.3 948,037 - +0.1 948,047 - +1.7 948,068 - +1.8 948,124 - +3.1 948,128 - +3.6 948,139 - +0.9 948,139 - +1.9 948,140 + -0.7 948,140 + -0.2 948,230 - +3.7 948,331 - +3.6 948,521 + -0.1 948,522 - +2.8 948,701 + HMPREF1058_RS15325 0.13 -1.9 948,701 + HMPREF1058_RS15325 0.13 -0.7 948,959 + -0.1 948,960 - HMPREF1058_RS15325 0.20 +2.5 948,960 - HMPREF1058_RS15325 0.20 +2.9 949,132 + HMPREF1058_RS15325 0.25 +0.3 949,169 + HMPREF1058_RS15325 0.26 +0.3 949,170 - HMPREF1058_RS15325 0.26 +1.7 949,173 + HMPREF1058_RS15325 0.26 -1.9 949,174 - HMPREF1058_RS15325 0.26 +1.2 949,174 - HMPREF1058_RS15325 0.26 +0.7 949,175 + HMPREF1058_RS15325 0.26 -0.1 949,232 - HMPREF1058_RS15325 0.28 +1.2 949,318 - HMPREF1058_RS15325 0.30 +1.8 949,329 + HMPREF1058_RS15325 0.31 -0.2 949,384 - HMPREF1058_RS15325 0.32 +2.6 949,386 + HMPREF1058_RS15325 0.32 +0.3 949,386 + HMPREF1058_RS15325 0.32 +0.3 949,387 - HMPREF1058_RS15325 0.32 +1.5 949,387 - HMPREF1058_RS15325 0.32 +1.1 949,398 - HMPREF1058_RS15325 0.32 +2.4 949,453 - HMPREF1058_RS15325 0.34 +1.9 949,458 + HMPREF1058_RS15325 0.34 +0.2 949,459 - HMPREF1058_RS15325 0.34 +2.5 949,460 + HMPREF1058_RS15325 0.34 -1.0 949,464 + HMPREF1058_RS15325 0.34 -0.1 949,465 - HMPREF1058_RS15325 0.34 +1.2 949,601 - HMPREF1058_RS15325 0.38 +2.0 949,643 + HMPREF1058_RS15325 0.39 -0.7 949,643 + HMPREF1058_RS15325 0.39 -1.4 949,644 - HMPREF1058_RS15325 0.39 +0.9 949,653 + HMPREF1058_RS15325 0.40 -0.9 949,736 + HMPREF1058_RS15325 0.42 -0.5 949,737 - HMPREF1058_RS15325 0.42 +1.8 949,737 - HMPREF1058_RS15325 0.42 +2.1 949,739 + HMPREF1058_RS15325 0.42 -0.9 949,740 - HMPREF1058_RS15325 0.42 +1.5 949,740 - HMPREF1058_RS15325 0.42 +0.7 949,766 + HMPREF1058_RS15325 0.43 +1.3 949,770 + HMPREF1058_RS15325 0.43 +0.7 949,770 + HMPREF1058_RS15325 0.43 +0.7 949,771 - HMPREF1058_RS15325 0.43 +1.2 949,830 + HMPREF1058_RS15325 0.45 +0.1 949,831 - HMPREF1058_RS15325 0.45 +1.3 949,904 + -0.3 950,006 - HMPREF1058_RS15325 0.49 +1.1 950,006 - HMPREF1058_RS15325 0.49 +1.8 950,011 - HMPREF1058_RS15325 0.50 -2.6 950,073 - HMPREF1058_RS15325 0.51 -0.4 950,420 - HMPREF1058_RS15325 0.61 +0.7 950,424 + HMPREF1058_RS15325 0.61 -0.8 950,424 + HMPREF1058_RS15325 0.61 -0.3 950,425 - HMPREF1058_RS15325 0.61 -2.0 950,425 - HMPREF1058_RS15325 0.61 +0.5 950,425 - HMPREF1058_RS15325 0.61 +0.9 950,550 + HMPREF1058_RS15325 0.65 +0.9 950,550 + HMPREF1058_RS15325 0.65 +1.2 950,550 + HMPREF1058_RS15325 0.65 +2.3 950,551 - HMPREF1058_RS15325 0.65 +1.7 950,551 - HMPREF1058_RS15325 0.65 +0.0 950,552 + HMPREF1058_RS15325 0.65 +0.1 950,552 + HMPREF1058_RS15325 0.65 -0.2 950,553 - HMPREF1058_RS15325 0.65 +1.2 950,553 - HMPREF1058_RS15325 0.65 +0.4 950,553 - HMPREF1058_RS15325 0.65 +1.2 950,553 - HMPREF1058_RS15325 0.65 +1.7 950,564 + HMPREF1058_RS15325 0.65 +0.7 950,565 - HMPREF1058_RS15325 0.65 -0.9 950,569 + HMPREF1058_RS15325 0.65 +0.9 950,570 - HMPREF1058_RS15325 0.65 -0.0 950,721 - HMPREF1058_RS15325 0.69 -0.1 950,726 + HMPREF1058_RS15325 0.70 -1.1 950,727 - HMPREF1058_RS15325 0.70 +0.5 950,727 - HMPREF1058_RS15325 0.70 -0.0 950,830 - HMPREF1058_RS15325 0.72 +2.3 950,859 + HMPREF1058_RS15325 0.73 -0.1 950,860 - HMPREF1058_RS15325 0.73 -0.2 950,931 - HMPREF1058_RS15325 0.75 +0.4 950,933 - HMPREF1058_RS15325 0.75 +0.3 950,976 + HMPREF1058_RS15325 0.77 -0.4 951,015 + HMPREF1058_RS15325 0.78 -0.5 951,016 - HMPREF1058_RS15325 0.78 +1.5 951,016 - HMPREF1058_RS15325 0.78 +0.5 951,037 - HMPREF1058_RS15325 0.78 +0.7 951,054 - HMPREF1058_RS15325 0.79 +3.0 951,096 + HMPREF1058_RS15325 0.80 +0.2 951,100 - HMPREF1058_RS15325 0.80 +0.6 951,101 + HMPREF1058_RS15325 0.80 -0.4 951,115 - HMPREF1058_RS15325 0.80 +1.3 951,228 - HMPREF1058_RS15325 0.84 +0.2 951,402 + HMPREF1058_RS15325 0.88 +0.8 951,578 - +0.3 951,582 + +0.8 951,772 + +0.4 951,773 - +0.2 951,801 - +0.1 951,816 + -1.3 951,820 + +1.4 951,821 - -0.3 951,825 - +2.3 951,867 - +1.4 951,867 - -0.2 951,872 - +1.5 951,927 - +2.2 952,003 - HMPREF1058_RS15320 0.10 +0.5 952,133 - HMPREF1058_RS15320 0.21 +2.7 952,136 + HMPREF1058_RS15320 0.21 -0.5 952,136 + HMPREF1058_RS15320 0.21 +0.4 952,142 + HMPREF1058_RS15320 0.21 -0.2 952,143 - HMPREF1058_RS15320 0.21 -0.1 952,300 - HMPREF1058_RS15320 0.34 +1.0 952,464 + HMPREF1058_RS15320 0.47 -1.2 952,465 - HMPREF1058_RS15320 0.47 +2.7 952,501 - HMPREF1058_RS15320 0.50 +2.1 952,698 - HMPREF1058_RS15320 0.66 +4.2 952,730 - HMPREF1058_RS15320 0.68 +1.5 952,730 - HMPREF1058_RS15320 0.68 +3.1 952,760 - HMPREF1058_RS15320 0.71 +1.1 952,760 - HMPREF1058_RS15320 0.71 +0.2 952,795 - HMPREF1058_RS15320 0.73 +2.7
Or see this region's nucleotide sequence