Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15325 and HMPREF1058_RS15320 are separated by 57 nucleotides HMPREF1058_RS15320 and HMPREF1058_RS15315 are separated by 81 nucleotides
HMPREF1058_RS15325: HMPREF1058_RS15325 - BACON domain-containing protein, at 948,235 to 951,816
_RS15325
HMPREF1058_RS15320: HMPREF1058_RS15320 - hypothetical protein, at 951,874 to 953,127
_RS15320
HMPREF1058_RS15315: HMPREF1058_RS15315 - FimB/Mfa2 family fimbrial subunit, at 953,209 to 954,177
_RS15315
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 950.931 kb on - strand, within HMPREF1058_RS15325 at 950.933 kb on - strand, within HMPREF1058_RS15325 at 950.976 kb on + strand, within HMPREF1058_RS15325 at 951.015 kb on + strand, within HMPREF1058_RS15325 at 951.016 kb on - strand, within HMPREF1058_RS15325 at 951.016 kb on - strand, within HMPREF1058_RS15325 at 951.037 kb on - strand, within HMPREF1058_RS15325 at 951.054 kb on - strand, within HMPREF1058_RS15325 at 951.096 kb on + strand, within HMPREF1058_RS15325 at 951.100 kb on - strand, within HMPREF1058_RS15325 at 951.101 kb on + strand, within HMPREF1058_RS15325 at 951.115 kb on - strand, within HMPREF1058_RS15325 at 951.228 kb on - strand, within HMPREF1058_RS15325 at 951.402 kb on + strand, within HMPREF1058_RS15325 at 951.578 kb on - strand at 951.582 kb on + strand at 951.772 kb on + strand at 951.773 kb on - strand at 951.801 kb on - strand at 951.816 kb on + strand at 951.820 kb on + strand at 951.821 kb on - strand at 951.825 kb on - strand at 951.867 kb on - strand at 951.867 kb on - strand at 951.872 kb on - strand at 951.927 kb on - strand at 952.003 kb on - strand, within HMPREF1058_RS15320 at 952.133 kb on - strand, within HMPREF1058_RS15320 at 952.136 kb on + strand, within HMPREF1058_RS15320 at 952.136 kb on + strand, within HMPREF1058_RS15320 at 952.142 kb on + strand, within HMPREF1058_RS15320 at 952.143 kb on - strand, within HMPREF1058_RS15320 at 952.300 kb on - strand, within HMPREF1058_RS15320 at 952.464 kb on + strand, within HMPREF1058_RS15320 at 952.465 kb on - strand, within HMPREF1058_RS15320 at 952.501 kb on - strand, within HMPREF1058_RS15320 at 952.698 kb on - strand, within HMPREF1058_RS15320 at 952.730 kb on - strand, within HMPREF1058_RS15320 at 952.730 kb on - strand, within HMPREF1058_RS15320 at 952.760 kb on - strand, within HMPREF1058_RS15320 at 952.760 kb on - strand, within HMPREF1058_RS15320 at 952.795 kb on - strand, within HMPREF1058_RS15320 at 952.829 kb on + strand, within HMPREF1058_RS15320 at 952.922 kb on + strand, within HMPREF1058_RS15320 at 952.922 kb on + strand, within HMPREF1058_RS15320 at 952.923 kb on - strand, within HMPREF1058_RS15320 at 952.977 kb on + strand, within HMPREF1058_RS15320 at 953.074 kb on + strand at 953.075 kb on - strand at 953.121 kb on - strand at 953.149 kb on - strand at 953.166 kb on - strand at 953.168 kb on + strand at 953.195 kb on - strand at 953.267 kb on - strand at 953.434 kb on + strand, within HMPREF1058_RS15315 at 953.556 kb on + strand, within HMPREF1058_RS15315 at 953.565 kb on - strand, within HMPREF1058_RS15315 at 953.627 kb on - strand, within HMPREF1058_RS15315 at 953.744 kb on + strand, within HMPREF1058_RS15315 at 953.744 kb on + strand, within HMPREF1058_RS15315 at 953.846 kb on + strand, within HMPREF1058_RS15315 at 954.112 kb on - strand at 954.112 kb on - strand at 954.118 kb on + strand at 954.119 kb on - strand at 954.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 950,931 - HMPREF1058_RS15325 0.75 +0.4 950,933 - HMPREF1058_RS15325 0.75 +0.3 950,976 + HMPREF1058_RS15325 0.77 -0.4 951,015 + HMPREF1058_RS15325 0.78 -0.5 951,016 - HMPREF1058_RS15325 0.78 +1.5 951,016 - HMPREF1058_RS15325 0.78 +0.5 951,037 - HMPREF1058_RS15325 0.78 +0.7 951,054 - HMPREF1058_RS15325 0.79 +3.0 951,096 + HMPREF1058_RS15325 0.80 +0.2 951,100 - HMPREF1058_RS15325 0.80 +0.6 951,101 + HMPREF1058_RS15325 0.80 -0.4 951,115 - HMPREF1058_RS15325 0.80 +1.3 951,228 - HMPREF1058_RS15325 0.84 +0.2 951,402 + HMPREF1058_RS15325 0.88 +0.8 951,578 - +0.3 951,582 + +0.8 951,772 + +0.4 951,773 - +0.2 951,801 - +0.1 951,816 + -1.3 951,820 + +1.4 951,821 - -0.3 951,825 - +2.3 951,867 - +1.4 951,867 - -0.2 951,872 - +1.5 951,927 - +2.2 952,003 - HMPREF1058_RS15320 0.10 +0.5 952,133 - HMPREF1058_RS15320 0.21 +2.7 952,136 + HMPREF1058_RS15320 0.21 -0.5 952,136 + HMPREF1058_RS15320 0.21 +0.4 952,142 + HMPREF1058_RS15320 0.21 -0.2 952,143 - HMPREF1058_RS15320 0.21 -0.1 952,300 - HMPREF1058_RS15320 0.34 +1.0 952,464 + HMPREF1058_RS15320 0.47 -1.2 952,465 - HMPREF1058_RS15320 0.47 +2.7 952,501 - HMPREF1058_RS15320 0.50 +2.1 952,698 - HMPREF1058_RS15320 0.66 +4.2 952,730 - HMPREF1058_RS15320 0.68 +1.5 952,730 - HMPREF1058_RS15320 0.68 +3.1 952,760 - HMPREF1058_RS15320 0.71 +1.1 952,760 - HMPREF1058_RS15320 0.71 +0.2 952,795 - HMPREF1058_RS15320 0.73 +2.7 952,829 + HMPREF1058_RS15320 0.76 +1.5 952,922 + HMPREF1058_RS15320 0.84 -0.8 952,922 + HMPREF1058_RS15320 0.84 +0.1 952,923 - HMPREF1058_RS15320 0.84 +2.7 952,977 + HMPREF1058_RS15320 0.88 -0.7 953,074 + -1.4 953,075 - +3.1 953,121 - +0.7 953,149 - +2.4 953,166 - +2.9 953,168 + -0.4 953,195 - +0.0 953,267 - +2.0 953,434 + HMPREF1058_RS15315 0.23 -0.2 953,556 + HMPREF1058_RS15315 0.36 -0.1 953,565 - HMPREF1058_RS15315 0.37 +1.2 953,627 - HMPREF1058_RS15315 0.43 +0.3 953,744 + HMPREF1058_RS15315 0.55 -1.3 953,744 + HMPREF1058_RS15315 0.55 +1.5 953,846 + HMPREF1058_RS15315 0.66 +2.1 954,112 - +1.1 954,112 - +3.6 954,118 + -0.5 954,119 - +2.4 954,119 - +1.0
Or see this region's nucleotide sequence