Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15320 and HMPREF1058_RS15315 are separated by 81 nucleotides HMPREF1058_RS15315 and HMPREF1058_RS15310 are separated by 145 nucleotides
HMPREF1058_RS15320: HMPREF1058_RS15320 - hypothetical protein, at 951,874 to 953,127
_RS15320
HMPREF1058_RS15315: HMPREF1058_RS15315 - FimB/Mfa2 family fimbrial subunit, at 953,209 to 954,177
_RS15315
HMPREF1058_RS15310: HMPREF1058_RS15310 - Mfa1 family fimbria major subunit, at 954,323 to 955,858
_RS15310
Position (kb) 953
954
955 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 952.300 kb on - strand, within HMPREF1058_RS15320 at 952.464 kb on + strand, within HMPREF1058_RS15320 at 952.465 kb on - strand, within HMPREF1058_RS15320 at 952.501 kb on - strand, within HMPREF1058_RS15320 at 952.698 kb on - strand, within HMPREF1058_RS15320 at 952.730 kb on - strand, within HMPREF1058_RS15320 at 952.730 kb on - strand, within HMPREF1058_RS15320 at 952.760 kb on - strand, within HMPREF1058_RS15320 at 952.760 kb on - strand, within HMPREF1058_RS15320 at 952.795 kb on - strand, within HMPREF1058_RS15320 at 952.829 kb on + strand, within HMPREF1058_RS15320 at 952.922 kb on + strand, within HMPREF1058_RS15320 at 952.922 kb on + strand, within HMPREF1058_RS15320 at 952.923 kb on - strand, within HMPREF1058_RS15320 at 952.977 kb on + strand, within HMPREF1058_RS15320 at 953.074 kb on + strand at 953.075 kb on - strand at 953.121 kb on - strand at 953.149 kb on - strand at 953.166 kb on - strand at 953.168 kb on + strand at 953.195 kb on - strand at 953.267 kb on - strand at 953.434 kb on + strand, within HMPREF1058_RS15315 at 953.556 kb on + strand, within HMPREF1058_RS15315 at 953.565 kb on - strand, within HMPREF1058_RS15315 at 953.627 kb on - strand, within HMPREF1058_RS15315 at 953.744 kb on + strand, within HMPREF1058_RS15315 at 953.744 kb on + strand, within HMPREF1058_RS15315 at 953.846 kb on + strand, within HMPREF1058_RS15315 at 954.112 kb on - strand at 954.112 kb on - strand at 954.118 kb on + strand at 954.119 kb on - strand at 954.119 kb on - strand at 954.155 kb on + strand at 954.155 kb on + strand at 954.156 kb on - strand at 954.156 kb on - strand at 954.156 kb on - strand at 954.184 kb on + strand at 954.204 kb on + strand at 954.222 kb on + strand at 954.276 kb on + strand at 954.277 kb on - strand at 954.280 kb on + strand at 954.288 kb on + strand at 954.290 kb on + strand at 954.325 kb on - strand at 954.325 kb on - strand at 954.387 kb on + strand at 954.388 kb on - strand at 954.528 kb on + strand, within HMPREF1058_RS15310 at 954.529 kb on - strand, within HMPREF1058_RS15310 at 954.533 kb on - strand, within HMPREF1058_RS15310 at 954.538 kb on + strand, within HMPREF1058_RS15310 at 954.631 kb on - strand, within HMPREF1058_RS15310 at 954.631 kb on - strand, within HMPREF1058_RS15310 at 954.634 kb on + strand, within HMPREF1058_RS15310 at 954.635 kb on - strand, within HMPREF1058_RS15310 at 954.635 kb on - strand, within HMPREF1058_RS15310 at 954.635 kb on - strand, within HMPREF1058_RS15310 at 954.636 kb on + strand, within HMPREF1058_RS15310 at 954.690 kb on + strand, within HMPREF1058_RS15310 at 954.694 kb on + strand, within HMPREF1058_RS15310 at 954.717 kb on + strand, within HMPREF1058_RS15310 at 954.737 kb on - strand, within HMPREF1058_RS15310 at 954.739 kb on - strand, within HMPREF1058_RS15310 at 954.801 kb on + strand, within HMPREF1058_RS15310 at 954.801 kb on + strand, within HMPREF1058_RS15310 at 954.802 kb on - strand, within HMPREF1058_RS15310 at 954.802 kb on - strand, within HMPREF1058_RS15310 at 954.802 kb on - strand, within HMPREF1058_RS15310 at 954.834 kb on + strand, within HMPREF1058_RS15310 at 954.862 kb on + strand, within HMPREF1058_RS15310 at 954.954 kb on + strand, within HMPREF1058_RS15310 at 954.954 kb on + strand, within HMPREF1058_RS15310 at 954.954 kb on + strand, within HMPREF1058_RS15310 at 955.063 kb on + strand, within HMPREF1058_RS15310 at 955.064 kb on - strand, within HMPREF1058_RS15310 at 955.096 kb on - strand, within HMPREF1058_RS15310 at 955.121 kb on - strand, within HMPREF1058_RS15310 at 955.149 kb on + strand, within HMPREF1058_RS15310 at 955.150 kb on - strand, within HMPREF1058_RS15310 at 955.150 kb on - strand, within HMPREF1058_RS15310 at 955.150 kb on - strand, within HMPREF1058_RS15310
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 952,300 - HMPREF1058_RS15320 0.34 +1.0 952,464 + HMPREF1058_RS15320 0.47 -1.2 952,465 - HMPREF1058_RS15320 0.47 +2.7 952,501 - HMPREF1058_RS15320 0.50 +2.1 952,698 - HMPREF1058_RS15320 0.66 +4.2 952,730 - HMPREF1058_RS15320 0.68 +1.5 952,730 - HMPREF1058_RS15320 0.68 +3.1 952,760 - HMPREF1058_RS15320 0.71 +1.1 952,760 - HMPREF1058_RS15320 0.71 +0.2 952,795 - HMPREF1058_RS15320 0.73 +2.7 952,829 + HMPREF1058_RS15320 0.76 +1.5 952,922 + HMPREF1058_RS15320 0.84 -0.8 952,922 + HMPREF1058_RS15320 0.84 +0.1 952,923 - HMPREF1058_RS15320 0.84 +2.7 952,977 + HMPREF1058_RS15320 0.88 -0.7 953,074 + -1.4 953,075 - +3.1 953,121 - +0.7 953,149 - +2.4 953,166 - +2.9 953,168 + -0.4 953,195 - +0.0 953,267 - +2.0 953,434 + HMPREF1058_RS15315 0.23 -0.2 953,556 + HMPREF1058_RS15315 0.36 -0.1 953,565 - HMPREF1058_RS15315 0.37 +1.2 953,627 - HMPREF1058_RS15315 0.43 +0.3 953,744 + HMPREF1058_RS15315 0.55 -1.3 953,744 + HMPREF1058_RS15315 0.55 +1.5 953,846 + HMPREF1058_RS15315 0.66 +2.1 954,112 - +1.1 954,112 - +3.6 954,118 + -0.5 954,119 - +2.4 954,119 - +1.0 954,155 + -0.5 954,155 + +2.7 954,156 - +3.5 954,156 - +2.3 954,156 - +4.3 954,184 + +0.9 954,204 + +2.0 954,222 + -0.1 954,276 + +0.3 954,277 - +2.3 954,280 + -0.3 954,288 + -0.9 954,290 + +0.3 954,325 - +0.2 954,325 - +0.9 954,387 + -1.2 954,388 - +2.1 954,528 + HMPREF1058_RS15310 0.13 -0.2 954,529 - HMPREF1058_RS15310 0.13 +4.2 954,533 - HMPREF1058_RS15310 0.14 +1.6 954,538 + HMPREF1058_RS15310 0.14 -0.6 954,631 - HMPREF1058_RS15310 0.20 +2.9 954,631 - HMPREF1058_RS15310 0.20 +3.3 954,634 + HMPREF1058_RS15310 0.20 -1.6 954,635 - HMPREF1058_RS15310 0.20 +2.9 954,635 - HMPREF1058_RS15310 0.20 +3.6 954,635 - HMPREF1058_RS15310 0.20 +3.1 954,636 + HMPREF1058_RS15310 0.20 -2.2 954,690 + HMPREF1058_RS15310 0.24 +0.1 954,694 + HMPREF1058_RS15310 0.24 -0.1 954,717 + HMPREF1058_RS15310 0.26 +0.3 954,737 - HMPREF1058_RS15310 0.27 +1.3 954,739 - HMPREF1058_RS15310 0.27 +1.7 954,801 + HMPREF1058_RS15310 0.31 +0.2 954,801 + HMPREF1058_RS15310 0.31 -0.4 954,802 - HMPREF1058_RS15310 0.31 +1.2 954,802 - HMPREF1058_RS15310 0.31 +1.6 954,802 - HMPREF1058_RS15310 0.31 +2.2 954,834 + HMPREF1058_RS15310 0.33 +1.0 954,862 + HMPREF1058_RS15310 0.35 +2.5 954,954 + HMPREF1058_RS15310 0.41 -0.3 954,954 + HMPREF1058_RS15310 0.41 -0.3 954,954 + HMPREF1058_RS15310 0.41 -0.0 955,063 + HMPREF1058_RS15310 0.48 +0.1 955,064 - HMPREF1058_RS15310 0.48 +0.1 955,096 - HMPREF1058_RS15310 0.50 +2.4 955,121 - HMPREF1058_RS15310 0.52 +3.4 955,149 + HMPREF1058_RS15310 0.54 +0.3 955,150 - HMPREF1058_RS15310 0.54 +3.1 955,150 - HMPREF1058_RS15310 0.54 +4.8 955,150 - HMPREF1058_RS15310 0.54 +3.0
Or see this region's nucleotide sequence