Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14945

Experiment: Beta-Lactose 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Beta-Lactose 10 mM (C)
1,062,290	+		HMPREF1058_RS14950	0.50	+2.5
1,062,323	+		HMPREF1058_RS14950	0.53	+0.8
1,062,339	+		HMPREF1058_RS14950	0.55	+0.4
1,062,514	-		HMPREF1058_RS14950	0.74	-0.5
1,062,521	-		HMPREF1058_RS14950	0.75	-1.4
1,062,596	+		HMPREF1058_RS14950	0.83	+0.9
1,062,596	+		HMPREF1058_RS14950	0.83	+2.0
1,062,607	+		HMPREF1058_RS14950	0.84	+0.5
1,062,633	+		HMPREF1058_RS14950	0.87	+0.2
1,062,633	+		HMPREF1058_RS14950	0.87	+2.3
1,062,663	+				+1.4
1,062,705	+				+0.4
1,062,706	-				+1.2
1,062,706	-				+0.5
1,062,725	-				-0.8
1,062,725	-				-1.9
1,062,778	+				+0.0
1,062,779	-				+0.1
1,062,780	+				-0.3
1,062,780	+				-0.3
1,062,781	-				+0.8
1,062,781	-				+0.7
1,062,784	+				-0.6
1,062,803	-				+1.8
1,062,814	+				+0.3
1,062,837	-				-0.1
1,062,838	+				-1.1
1,062,870	-				+0.7
1,062,915	+				-0.8
1,062,933	+				-0.2
1,062,936	-				+1.6
1,062,955	+				-1.4
1,062,956	-				-0.5
1,063,025	-				+1.6
1,063,043	+				-1.7
1,063,045	+				-0.3
1,063,067	-				+0.6
1,063,092	-				+2.0
1,063,125	+				-3.3
1,063,126	-				+1.3
1,063,128	+				-1.1
1,063,129	-				-0.3
1,063,160	-				+1.1
1,063,195	-				-0.7
1,063,257	-				+0.6
1,063,261	+				+2.1
1,063,262	-				+0.8
1,063,271	+				+2.3
1,063,273	+				+1.7
1,063,274	-				+0.6
1,063,299	+				+0.6
1,063,299	+				+0.5
1,063,299	+				+0.7
1,063,431	+				+1.0
1,063,432	-				-1.1
1,063,470	+				+0.9
1,063,475	+				+1.0
1,063,524	-				-0.2
1,063,555	+		HMPREF1058_RS14945	0.10	-1.5
1,063,660	+		HMPREF1058_RS14945	0.14	+0.9
1,063,683	-		HMPREF1058_RS14945	0.15	+1.1
1,063,804	-		HMPREF1058_RS14945	0.19	+2.4
1,063,804	-		HMPREF1058_RS14945	0.19	+1.1
1,063,848	-		HMPREF1058_RS14945	0.21	+2.7
1,063,851	+		HMPREF1058_RS14945	0.21	+2.9
1,063,877	-		HMPREF1058_RS14945	0.22	+1.8
1,063,911	-		HMPREF1058_RS14945	0.23	+1.1
1,063,986	-		HMPREF1058_RS14945	0.26	+1.8
1,064,017	+		HMPREF1058_RS14945	0.27	+2.6
1,064,155	+		HMPREF1058_RS14945	0.32	+1.6
1,064,156	-		HMPREF1058_RS14945	0.32	+1.0
1,064,174	-		HMPREF1058_RS14945	0.32	+0.8
1,064,224	+		HMPREF1058_RS14945	0.34	+1.1
1,064,227	-		HMPREF1058_RS14945	0.34	+0.8
1,064,271	+		HMPREF1058_RS14945	0.36	+0.7
1,064,271	+		HMPREF1058_RS14945	0.36	+1.3
1,064,271	+		HMPREF1058_RS14945	0.36	+2.4
1,064,271	+		HMPREF1058_RS14945	0.36	-0.2
1,064,272	-		HMPREF1058_RS14945	0.36	+1.8
1,064,272	-		HMPREF1058_RS14945	0.36	-0.0
1,064,272	-		HMPREF1058_RS14945	0.36	+0.9
1,064,272	-		HMPREF1058_RS14945	0.36	+0.9
1,064,275	+		HMPREF1058_RS14945	0.36	+0.1
1,064,275	+		HMPREF1058_RS14945	0.36	+0.7
1,064,300	-		HMPREF1058_RS14945	0.37	+1.1
1,064,308	+		HMPREF1058_RS14945	0.37	+0.7
1,064,316	+		HMPREF1058_RS14945	0.37	+1.0
1,064,456	+		HMPREF1058_RS14945	0.42	+1.5
1,064,702	-		HMPREF1058_RS14945	0.51	+1.0
1,064,744	-		HMPREF1058_RS14945	0.53	+1.8
1,064,770	-		HMPREF1058_RS14945	0.54	+1.1
1,064,849	-		HMPREF1058_RS14945	0.56	+2.1
1,064,865	+		HMPREF1058_RS14945	0.57	+1.2
1,064,866	-		HMPREF1058_RS14945	0.57	+2.8
1,064,869	+		HMPREF1058_RS14945	0.57	+0.2
1,064,876	-		HMPREF1058_RS14945	0.57	+0.8
1,064,886	-		HMPREF1058_RS14945	0.58	+1.5
1,064,910	-		HMPREF1058_RS14945	0.59	+1.1
1,064,935	-		HMPREF1058_RS14945	0.60	+0.7
1,064,935	-		HMPREF1058_RS14945	0.60	+0.6
1,064,939	+		HMPREF1058_RS14945	0.60	+0.7
1,064,946	+		HMPREF1058_RS14945	0.60	+2.2
1,064,946	+		HMPREF1058_RS14945	0.60	+0.4
1,064,946	+		HMPREF1058_RS14945	0.60	+1.1
1,064,947	-		HMPREF1058_RS14945	0.60	+0.0
1,064,947	-		HMPREF1058_RS14945	0.60	+1.4
1,064,949	-		HMPREF1058_RS14945	0.60	+0.8
1,065,047	-		HMPREF1058_RS14945	0.64	+0.6
1,065,051	+		HMPREF1058_RS14945	0.64	+0.6
1,065,056	-		HMPREF1058_RS14945	0.64	+0.9
1,065,075	+		HMPREF1058_RS14945	0.65	+1.7
1,065,158	+		HMPREF1058_RS14945	0.68	+1.1
1,065,158	+		HMPREF1058_RS14945	0.68	-0.0
1,065,159	-		HMPREF1058_RS14945	0.68	+1.3
1,065,159	-		HMPREF1058_RS14945	0.68	+0.4
1,065,159	-		HMPREF1058_RS14945	0.68	-0.0
1,065,215	+		HMPREF1058_RS14945	0.70	+0.8
1,065,215	+		HMPREF1058_RS14945	0.70	+1.2
1,065,231	+		HMPREF1058_RS14945	0.70	+0.9
1,065,231	+		HMPREF1058_RS14945	0.70	+1.0
1,065,232	-		HMPREF1058_RS14945	0.70	+1.3
1,065,239	+		HMPREF1058_RS14945	0.70	+0.2
1,065,239	+		HMPREF1058_RS14945	0.70	+1.3
1,065,240	-		HMPREF1058_RS14945	0.70	+0.4
1,065,243	+		HMPREF1058_RS14945	0.71	+0.1
1,065,243	+		HMPREF1058_RS14945	0.71	-0.3
1,065,244	-		HMPREF1058_RS14945	0.71	+1.4
1,065,290	+		HMPREF1058_RS14945	0.72	+0.3
1,065,290	+		HMPREF1058_RS14945	0.72	+1.4
1,065,302	-		HMPREF1058_RS14945	0.73	+1.9
1,065,326	+		HMPREF1058_RS14945	0.74	+0.2
1,065,328	+		HMPREF1058_RS14945	0.74	+0.2
1,065,397	+		HMPREF1058_RS14945	0.76	+0.9
1,065,419	+		HMPREF1058_RS14945	0.77	+0.7
1,065,419	+		HMPREF1058_RS14945	0.77	+0.1
1,065,419	+		HMPREF1058_RS14945	0.77	+1.1
1,065,420	-		HMPREF1058_RS14945	0.77	+0.7
1,065,427	+		HMPREF1058_RS14945	0.77	+1.7
1,065,432	-		HMPREF1058_RS14945	0.77	+1.5
1,065,432	-		HMPREF1058_RS14945	0.77	+1.2
1,065,510	-		HMPREF1058_RS14945	0.80	+0.4
1,065,536	+				+3.9
1,065,577	-		HMPREF1058_RS14945	0.82	-0.0
1,065,577	-		HMPREF1058_RS14945	0.82	+0.2
1,065,598	+		HMPREF1058_RS14945	0.83	+0.0
1,065,599	-		HMPREF1058_RS14945	0.83	-0.4
1,065,599	-		HMPREF1058_RS14945	0.83	+2.6
1,065,599	-		HMPREF1058_RS14945	0.83	+0.2
1,065,688	-		HMPREF1058_RS14945	0.86	+1.3
1,065,695	-		HMPREF1058_RS14945	0.87	+0.5
1,065,749	+		HMPREF1058_RS14945	0.89	+0.2
1,065,768	-		HMPREF1058_RS14945	0.89	+0.9
1,065,768	-		HMPREF1058_RS14945	0.89	+0.1
1,065,768	-		HMPREF1058_RS14945	0.89	+1.5
1,065,770	-		HMPREF1058_RS14945	0.89	-0.6
1,065,805	+				+1.6
1,065,805	+				+0.2
1,065,805	+				+1.2
1,065,805	+				-0.7
1,065,806	-				+0.5
1,065,819	-				+0.0
1,065,820	+				+2.3
1,065,856	+				+0.5
1,065,857	-				+2.9
1,065,956	-				-0.3
1,065,960	-				+1.2
1,065,972	-				+1.0
1,066,004	-				+0.6
1,066,004	-				+0.2
1,066,044	+				-0.6
1,066,056	-				+1.1
1,066,086	-				+1.4
1,066,087	+				+0.9
1,066,116	-				+2.5
1,066,123	+				+1.0
1,066,127	-				+0.4
1,066,127	-				+1.0
1,066,145	-				+1.2
1,066,204	+		HMPREF1058_RS14940	0.11	+1.1
1,066,205	-		HMPREF1058_RS14940	0.11	+1.0
1,066,209	-		HMPREF1058_RS14940	0.12	+1.2
1,066,211	-		HMPREF1058_RS14940	0.12	+2.3
1,066,211	-		HMPREF1058_RS14940	0.12	+0.1
1,066,285	+		HMPREF1058_RS14940	0.18	+0.4
1,066,286	-		HMPREF1058_RS14940	0.18	+2.1
1,066,343	+		HMPREF1058_RS14940	0.23	+1.7
1,066,366	+		HMPREF1058_RS14940	0.25	+0.9
1,066,378	+		HMPREF1058_RS14940	0.26	+1.1
1,066,383	+		HMPREF1058_RS14940	0.26	+1.3
1,066,448	-		HMPREF1058_RS14940	0.32	+0.5
1,066,460	-		HMPREF1058_RS14940	0.33	-2.9
1,066,484	+		HMPREF1058_RS14940	0.35	+1.2
1,066,485	-		HMPREF1058_RS14940	0.35	+0.2
1,066,516	-		HMPREF1058_RS14940	0.37	-0.1
1,066,517	+		HMPREF1058_RS14940	0.37	+1.2
1,066,517	+		HMPREF1058_RS14940	0.37	+2.4
1,066,542	+		HMPREF1058_RS14940	0.40	+1.1
1,066,604	+		HMPREF1058_RS14940	0.45	+0.2
1,066,652	-		HMPREF1058_RS14940	0.49	+0.9
1,066,661	+		HMPREF1058_RS14940	0.50	+1.9
1,066,661	+		HMPREF1058_RS14940	0.50	+1.3
1,066,727	+		HMPREF1058_RS14940	0.55	+0.9
1,066,728	-				+0.7
1,066,728	-		HMPREF1058_RS14940	0.55	-0.3
1,066,729	+		HMPREF1058_RS14940	0.55	-0.1
1,066,778	+		HMPREF1058_RS14940	0.59	+0.5
1,066,809	+		HMPREF1058_RS14940	0.62	+0.6
1,066,850	-		HMPREF1058_RS14940	0.65	-1.3
1,066,914	-		HMPREF1058_RS14940	0.71	+1.0
1,066,917	+		HMPREF1058_RS14940	0.71	+1.3
1,066,962	-		HMPREF1058_RS14940	0.75	+2.3
1,066,962	-		HMPREF1058_RS14940	0.75	+0.4
1,067,027	+		HMPREF1058_RS14940	0.80	+0.9
1,067,027	+		HMPREF1058_RS14940	0.80	+1.1
1,067,027	+		HMPREF1058_RS14940	0.80	+0.3
1,067,028	-		HMPREF1058_RS14940	0.80	-0.8
1,067,052	+		HMPREF1058_RS14940	0.82	+1.3