Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14020

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14030 and HMPREF1058_RS14025 overlap by 10 nucleotidesHMPREF1058_RS14025 and HMPREF1058_RS14020 overlap by 32 nucleotidesHMPREF1058_RS14020 and HMPREF1058_RS14015 are separated by 92 nucleotides HMPREF1058_RS14030: HMPREF1058_RS14030 - DUF3822 family protein, at 1,303,824 to 1,304,648 _RS14030 HMPREF1058_RS14025: HMPREF1058_RS14025 - RsmD family RNA methyltransferase, at 1,304,639 to 1,305,199 _RS14025 HMPREF1058_RS14020: HMPREF1058_RS14020 - cardiolipin synthase, at 1,305,168 to 1,306,604 _RS14020 HMPREF1058_RS14015: HMPREF1058_RS14015 - TonB-dependent receptor, at 1,306,697 to 1,309,594 _RS14015 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1304.191 kb on + strand, within HMPREF1058_RS14030at 1304.243 kb on + strand, within HMPREF1058_RS14030at 1304.325 kb on + strand, within HMPREF1058_RS14030at 1304.331 kb on + strand, within HMPREF1058_RS14030at 1304.331 kb on + strand, within HMPREF1058_RS14030at 1304.331 kb on + strand, within HMPREF1058_RS14030at 1304.331 kb on + strand, within HMPREF1058_RS14030at 1304.332 kb on - strand, within HMPREF1058_RS14030at 1304.332 kb on - strand, within HMPREF1058_RS14030at 1304.380 kb on + strand, within HMPREF1058_RS14030at 1304.380 kb on + strand, within HMPREF1058_RS14030at 1304.434 kb on + strand, within HMPREF1058_RS14030at 1304.437 kb on + strand, within HMPREF1058_RS14030at 1304.438 kb on - strand, within HMPREF1058_RS14030at 1304.439 kb on + strand, within HMPREF1058_RS14030at 1304.440 kb on - strand, within HMPREF1058_RS14030at 1304.440 kb on - strand, within HMPREF1058_RS14030at 1304.440 kb on - strand, within HMPREF1058_RS14030at 1304.440 kb on - strand, within HMPREF1058_RS14030at 1304.443 kb on + strand, within HMPREF1058_RS14030at 1304.443 kb on + strand, within HMPREF1058_RS14030at 1304.444 kb on - strand, within HMPREF1058_RS14030at 1304.456 kb on - strand, within HMPREF1058_RS14030at 1304.501 kb on - strand, within HMPREF1058_RS14030at 1304.594 kb on - strandat 1304.633 kb on - strandat 1304.635 kb on + strandat 1304.636 kb on - strandat 1304.656 kb on + strandat 1304.659 kb on - strandat 1304.661 kb on - strandat 1304.745 kb on + strand, within HMPREF1058_RS14025at 1304.745 kb on + strand, within HMPREF1058_RS14025at 1304.746 kb on - strand, within HMPREF1058_RS14025at 1304.820 kb on + strand, within HMPREF1058_RS14025at 1304.820 kb on + strand, within HMPREF1058_RS14025at 1304.820 kb on + strand, within HMPREF1058_RS14025at 1304.932 kb on + strand, within HMPREF1058_RS14025at 1304.934 kb on + strand, within HMPREF1058_RS14025at 1304.934 kb on + strand, within HMPREF1058_RS14025at 1304.957 kb on - strand, within HMPREF1058_RS14025at 1304.958 kb on + strand, within HMPREF1058_RS14025at 1305.061 kb on - strand, within HMPREF1058_RS14025at 1305.317 kb on - strand, within HMPREF1058_RS14020at 1305.317 kb on - strand, within HMPREF1058_RS14020at 1305.320 kb on + strand, within HMPREF1058_RS14020at 1305.342 kb on - strand, within HMPREF1058_RS14020at 1305.371 kb on + strand, within HMPREF1058_RS14020at 1305.392 kb on + strand, within HMPREF1058_RS14020at 1305.442 kb on + strand, within HMPREF1058_RS14020at 1305.443 kb on - strand, within HMPREF1058_RS14020at 1305.443 kb on - strand, within HMPREF1058_RS14020at 1305.530 kb on + strand, within HMPREF1058_RS14020at 1305.601 kb on + strand, within HMPREF1058_RS14020at 1305.613 kb on - strand, within HMPREF1058_RS14020at 1305.616 kb on + strand, within HMPREF1058_RS14020at 1305.616 kb on + strand, within HMPREF1058_RS14020at 1305.641 kb on + strand, within HMPREF1058_RS14020at 1305.642 kb on - strand, within HMPREF1058_RS14020at 1305.645 kb on + strand, within HMPREF1058_RS14020at 1305.696 kb on - strand, within HMPREF1058_RS14020at 1305.706 kb on - strand, within HMPREF1058_RS14020at 1305.774 kb on + strand, within HMPREF1058_RS14020at 1305.778 kb on + strand, within HMPREF1058_RS14020at 1305.779 kb on - strand, within HMPREF1058_RS14020at 1305.813 kb on + strand, within HMPREF1058_RS14020at 1305.829 kb on - strandat 1305.906 kb on - strand, within HMPREF1058_RS14020at 1305.906 kb on - strand, within HMPREF1058_RS14020at 1305.908 kb on - strand, within HMPREF1058_RS14020at 1305.927 kb on + strand, within HMPREF1058_RS14020at 1305.948 kb on - strandat 1305.957 kb on + strand, within HMPREF1058_RS14020at 1305.958 kb on - strand, within HMPREF1058_RS14020at 1306.106 kb on + strand, within HMPREF1058_RS14020at 1306.325 kb on + strand, within HMPREF1058_RS14020at 1306.345 kb on + strand, within HMPREF1058_RS14020at 1306.433 kb on - strand, within HMPREF1058_RS14020at 1306.518 kb on + strandat 1306.518 kb on + strandat 1306.526 kb on + strandat 1306.549 kb on + strandat 1306.549 kb on + strandat 1306.559 kb on + strandat 1306.590 kb on - strandat 1306.607 kb on - strandat 1306.607 kb on - strandat 1306.620 kb on + strandat 1306.625 kb on - strandat 1306.626 kb on + strandat 1306.637 kb on - strandat 1306.655 kb on + strandat 1306.665 kb on + strandat 1306.665 kb on + strandat 1306.666 kb on - strandat 1306.666 kb on - strandat 1306.666 kb on - strandat 1306.689 kb on - strandat 1306.689 kb on - strandat 1306.765 kb on + strandat 1306.792 kb on + strandat 1306.816 kb on - strandat 1306.820 kb on - strandat 1306.831 kb on + strandat 1306.832 kb on - strandat 1306.836 kb on + strandat 1306.836 kb on + strandat 1306.837 kb on - strandat 1306.837 kb on - strandat 1306.872 kb on - strandat 1306.872 kb on - strandat 1306.898 kb on - strandat 1307.019 kb on + strand, within HMPREF1058_RS14015at 1307.044 kb on + strand, within HMPREF1058_RS14015at 1307.047 kb on + strand, within HMPREF1058_RS14015at 1307.048 kb on - strand, within HMPREF1058_RS14015at 1307.048 kb on - strand, within HMPREF1058_RS14015at 1307.107 kb on + strand, within HMPREF1058_RS14015at 1307.107 kb on + strand, within HMPREF1058_RS14015at 1307.107 kb on + strand, within HMPREF1058_RS14015at 1307.143 kb on + strand, within HMPREF1058_RS14015at 1307.144 kb on - strand, within HMPREF1058_RS14015at 1307.155 kb on + strand, within HMPREF1058_RS14015at 1307.156 kb on - strand, within HMPREF1058_RS14015at 1307.157 kb on + strand, within HMPREF1058_RS14015at 1307.165 kb on - strand, within HMPREF1058_RS14015at 1307.252 kb on - strand, within HMPREF1058_RS14015at 1307.278 kb on - strand, within HMPREF1058_RS14015at 1307.279 kb on + strand, within HMPREF1058_RS14015at 1307.329 kb on + strand, within HMPREF1058_RS14015at 1307.437 kb on - strand, within HMPREF1058_RS14015at 1307.446 kb on + strand, within HMPREF1058_RS14015at 1307.446 kb on + strand, within HMPREF1058_RS14015at 1307.447 kb on - strandat 1307.459 kb on - strand, within HMPREF1058_RS14015at 1307.516 kb on - strand, within HMPREF1058_RS14015at 1307.517 kb on + strand, within HMPREF1058_RS14015at 1307.518 kb on - strand, within HMPREF1058_RS14015at 1307.584 kb on + strand, within HMPREF1058_RS14015

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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1,304,191 + HMPREF1058_RS14030 0.44 -0.0
1,304,243 + HMPREF1058_RS14030 0.51 -0.2
1,304,325 + HMPREF1058_RS14030 0.61 -0.2
1,304,331 + HMPREF1058_RS14030 0.61 -0.9
1,304,331 + HMPREF1058_RS14030 0.61 +0.3
1,304,331 + HMPREF1058_RS14030 0.61 +0.5
1,304,331 + HMPREF1058_RS14030 0.61 -0.7
1,304,332 - HMPREF1058_RS14030 0.62 +0.3
1,304,332 - HMPREF1058_RS14030 0.62 +0.6
1,304,380 + HMPREF1058_RS14030 0.67 -0.3
1,304,380 + HMPREF1058_RS14030 0.67 -1.6
1,304,434 + HMPREF1058_RS14030 0.74 -2.0
1,304,437 + HMPREF1058_RS14030 0.74 +1.6
1,304,438 - HMPREF1058_RS14030 0.74 -0.4
1,304,439 + HMPREF1058_RS14030 0.75 +0.2
1,304,440 - HMPREF1058_RS14030 0.75 -1.3
1,304,440 - HMPREF1058_RS14030 0.75 -1.5
1,304,440 - HMPREF1058_RS14030 0.75 -1.7
1,304,440 - HMPREF1058_RS14030 0.75 +0.2
1,304,443 + HMPREF1058_RS14030 0.75 +0.1
1,304,443 + HMPREF1058_RS14030 0.75 -1.2
1,304,444 - HMPREF1058_RS14030 0.75 -1.7
1,304,456 - HMPREF1058_RS14030 0.77 -0.6
1,304,501 - HMPREF1058_RS14030 0.82 -0.3
1,304,594 - +0.2
1,304,633 - -1.9
1,304,635 + +0.6
1,304,636 - +1.7
1,304,656 + -1.6
1,304,659 - +0.3
1,304,661 - -2.4
1,304,745 + HMPREF1058_RS14025 0.19 -0.7
1,304,745 + HMPREF1058_RS14025 0.19 -2.1
1,304,746 - HMPREF1058_RS14025 0.19 +1.8
1,304,820 + HMPREF1058_RS14025 0.32 -1.1
1,304,820 + HMPREF1058_RS14025 0.32 -1.0
1,304,820 + HMPREF1058_RS14025 0.32 -0.2
1,304,932 + HMPREF1058_RS14025 0.52 -2.1
1,304,934 + HMPREF1058_RS14025 0.53 -0.7
1,304,934 + HMPREF1058_RS14025 0.53 -1.9
1,304,957 - HMPREF1058_RS14025 0.57 +1.2
1,304,958 + HMPREF1058_RS14025 0.57 -0.1
1,305,061 - HMPREF1058_RS14025 0.75 -0.2
1,305,317 - HMPREF1058_RS14020 0.10 +1.4
1,305,317 - HMPREF1058_RS14020 0.10 +0.8
1,305,320 + HMPREF1058_RS14020 0.11 -0.1
1,305,342 - HMPREF1058_RS14020 0.12 +1.2
1,305,371 + HMPREF1058_RS14020 0.14 -0.2
1,305,392 + HMPREF1058_RS14020 0.16 -0.4
1,305,442 + HMPREF1058_RS14020 0.19 +0.1
1,305,443 - HMPREF1058_RS14020 0.19 -1.2
1,305,443 - HMPREF1058_RS14020 0.19 +0.4
1,305,530 + HMPREF1058_RS14020 0.25 +0.4
1,305,601 + HMPREF1058_RS14020 0.30 +0.5
1,305,613 - HMPREF1058_RS14020 0.31 +0.4
1,305,616 + HMPREF1058_RS14020 0.31 +0.3
1,305,616 + HMPREF1058_RS14020 0.31 -0.1
1,305,641 + HMPREF1058_RS14020 0.33 +2.0
1,305,642 - HMPREF1058_RS14020 0.33 +0.6
1,305,645 + HMPREF1058_RS14020 0.33 +1.8
1,305,696 - HMPREF1058_RS14020 0.37 +0.5
1,305,706 - HMPREF1058_RS14020 0.37 -0.0
1,305,774 + HMPREF1058_RS14020 0.42 +0.2
1,305,778 + HMPREF1058_RS14020 0.42 +1.4
1,305,779 - HMPREF1058_RS14020 0.43 +0.7
1,305,813 + HMPREF1058_RS14020 0.45 +0.9
1,305,829 - -0.6
1,305,906 - HMPREF1058_RS14020 0.51 +1.3
1,305,906 - HMPREF1058_RS14020 0.51 +1.2
1,305,908 - HMPREF1058_RS14020 0.51 +2.0
1,305,927 + HMPREF1058_RS14020 0.53 +0.6
1,305,948 - +0.8
1,305,957 + HMPREF1058_RS14020 0.55 +0.0
1,305,958 - HMPREF1058_RS14020 0.55 +0.7
1,306,106 + HMPREF1058_RS14020 0.65 +0.4
1,306,325 + HMPREF1058_RS14020 0.81 +0.6
1,306,345 + HMPREF1058_RS14020 0.82 +0.3
1,306,433 - HMPREF1058_RS14020 0.88 -0.3
1,306,518 + -0.6
1,306,518 + +1.1
1,306,526 + +0.3
1,306,549 + -1.4
1,306,549 + +0.2
1,306,559 + -0.2
1,306,590 - +1.8
1,306,607 - +0.1
1,306,607 - +1.1
1,306,620 + +2.0
1,306,625 - -1.2
1,306,626 + +0.1
1,306,637 - -1.2
1,306,655 + +0.6
1,306,665 + +1.0
1,306,665 + +0.7
1,306,666 - -0.1
1,306,666 - -0.2
1,306,666 - -6.7
1,306,689 - +0.2
1,306,689 - -0.3
1,306,765 + +0.1
1,306,792 + +1.8
1,306,816 - +1.4
1,306,820 - +0.2
1,306,831 + +2.2
1,306,832 - +1.6
1,306,836 + +2.1
1,306,836 + -0.3
1,306,837 - +1.0
1,306,837 - +1.4
1,306,872 - +0.4
1,306,872 - +0.8
1,306,898 - +0.1
1,307,019 + HMPREF1058_RS14015 0.11 -0.2
1,307,044 + HMPREF1058_RS14015 0.12 +0.3
1,307,047 + HMPREF1058_RS14015 0.12 +1.6
1,307,048 - HMPREF1058_RS14015 0.12 +0.4
1,307,048 - HMPREF1058_RS14015 0.12 +0.2
1,307,107 + HMPREF1058_RS14015 0.14 +0.3
1,307,107 + HMPREF1058_RS14015 0.14 -0.2
1,307,107 + HMPREF1058_RS14015 0.14 -1.2
1,307,143 + HMPREF1058_RS14015 0.15 +1.2
1,307,144 - HMPREF1058_RS14015 0.15 +0.7
1,307,155 + HMPREF1058_RS14015 0.16 -0.0
1,307,156 - HMPREF1058_RS14015 0.16 +0.4
1,307,157 + HMPREF1058_RS14015 0.16 -0.1
1,307,165 - HMPREF1058_RS14015 0.16 +0.3
1,307,252 - HMPREF1058_RS14015 0.19 +0.3
1,307,278 - HMPREF1058_RS14015 0.20 +0.2
1,307,279 + HMPREF1058_RS14015 0.20 +0.1
1,307,329 + HMPREF1058_RS14015 0.22 +0.3
1,307,437 - HMPREF1058_RS14015 0.26 +0.1
1,307,446 + HMPREF1058_RS14015 0.26 -0.6
1,307,446 + HMPREF1058_RS14015 0.26 +1.1
1,307,447 - -0.0
1,307,459 - HMPREF1058_RS14015 0.26 +1.1
1,307,516 - HMPREF1058_RS14015 0.28 -0.5
1,307,517 + HMPREF1058_RS14015 0.28 +1.6
1,307,518 - HMPREF1058_RS14015 0.28 +1.8
1,307,584 + HMPREF1058_RS14015 0.31 +0.2

Or see this region's nucleotide sequence