Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS13565 and HMPREF1058_RS0119475 are separated by 188 nucleotides HMPREF1058_RS0119475 and HMPREF1058_RS13560 are separated by 141 nucleotides HMPREF1058_RS13560 and HMPREF1058_RS13555 are separated by 28 nucleotides
HMPREF1058_RS13565: HMPREF1058_RS13565 - pectate lyase, at 1,436,854 to 1,438,467
_RS13565
HMPREF1058_RS0119475: HMPREF1058_RS0119475 - cupin domain-containing protein, at 1,438,656 to 1,439,147
_RS0119475
HMPREF1058_RS13560: HMPREF1058_RS13560 - beta-glycosidase, at 1,439,289 to 1,442,657
_RS13560
HMPREF1058_RS13555: HMPREF1058_RS13555 - hypothetical protein, at 1,442,686 to 1,445,232
_RS13555
Position (kb) 1439
1440
1441
1442
1443 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1438.305 kb on + strand, within HMPREF1058_RS13565 at 1438.350 kb on + strand at 1438.397 kb on - strand at 1438.517 kb on + strand at 1438.547 kb on + strand at 1438.548 kb on - strand at 1438.567 kb on + strand at 1438.573 kb on - strand at 1438.602 kb on + strand at 1438.603 kb on - strand at 1438.603 kb on - strand at 1438.606 kb on + strand at 1438.606 kb on + strand at 1438.608 kb on + strand at 1438.644 kb on - strand at 1438.670 kb on - strand at 1438.684 kb on - strand at 1438.708 kb on + strand, within HMPREF1058_RS0119475 at 1438.763 kb on + strand, within HMPREF1058_RS0119475 at 1438.868 kb on - strand, within HMPREF1058_RS0119475 at 1438.936 kb on + strand, within HMPREF1058_RS0119475 at 1438.936 kb on + strand, within HMPREF1058_RS0119475 at 1438.974 kb on + strand, within HMPREF1058_RS0119475 at 1438.975 kb on - strand at 1438.975 kb on - strand, within HMPREF1058_RS0119475 at 1439.078 kb on - strand, within HMPREF1058_RS0119475 at 1439.078 kb on - strand, within HMPREF1058_RS0119475 at 1439.101 kb on + strand at 1439.156 kb on + strand at 1439.157 kb on - strand at 1439.159 kb on - strand at 1439.159 kb on - strand at 1439.206 kb on + strand at 1439.207 kb on - strand at 1439.207 kb on - strand at 1439.218 kb on - strand at 1439.218 kb on - strand at 1439.278 kb on + strand at 1439.278 kb on + strand at 1439.365 kb on + strand at 1439.447 kb on + strand at 1439.447 kb on + strand at 1439.447 kb on + strand at 1439.511 kb on - strand at 1439.514 kb on + strand at 1439.514 kb on + strand at 1439.515 kb on - strand at 1439.792 kb on + strand, within HMPREF1058_RS13560 at 1439.795 kb on + strand, within HMPREF1058_RS13560 at 1439.927 kb on + strand, within HMPREF1058_RS13560 at 1439.957 kb on + strand, within HMPREF1058_RS13560 at 1439.983 kb on - strand, within HMPREF1058_RS13560 at 1439.999 kb on + strand, within HMPREF1058_RS13560 at 1440.000 kb on + strand, within HMPREF1058_RS13560 at 1440.020 kb on + strand, within HMPREF1058_RS13560 at 1440.020 kb on + strand, within HMPREF1058_RS13560 at 1440.021 kb on - strand, within HMPREF1058_RS13560 at 1440.042 kb on - strand, within HMPREF1058_RS13560 at 1440.118 kb on + strand at 1440.121 kb on + strand, within HMPREF1058_RS13560 at 1440.122 kb on - strand, within HMPREF1058_RS13560 at 1440.122 kb on - strand, within HMPREF1058_RS13560 at 1440.215 kb on + strand, within HMPREF1058_RS13560 at 1440.235 kb on - strand, within HMPREF1058_RS13560 at 1440.248 kb on - strand, within HMPREF1058_RS13560 at 1440.360 kb on + strand, within HMPREF1058_RS13560 at 1440.539 kb on - strand, within HMPREF1058_RS13560 at 1440.661 kb on + strand, within HMPREF1058_RS13560 at 1440.661 kb on + strand, within HMPREF1058_RS13560 at 1440.662 kb on - strand, within HMPREF1058_RS13560 at 1440.662 kb on - strand, within HMPREF1058_RS13560 at 1440.684 kb on + strand, within HMPREF1058_RS13560 at 1440.684 kb on + strand, within HMPREF1058_RS13560 at 1440.685 kb on - strand, within HMPREF1058_RS13560 at 1440.792 kb on - strand, within HMPREF1058_RS13560 at 1440.832 kb on + strand, within HMPREF1058_RS13560 at 1440.925 kb on + strand, within HMPREF1058_RS13560 at 1440.961 kb on + strand, within HMPREF1058_RS13560 at 1440.967 kb on + strand, within HMPREF1058_RS13560 at 1441.053 kb on - strand, within HMPREF1058_RS13560 at 1441.069 kb on + strand, within HMPREF1058_RS13560 at 1441.153 kb on + strand, within HMPREF1058_RS13560 at 1441.178 kb on + strand at 1441.202 kb on + strand, within HMPREF1058_RS13560 at 1441.203 kb on - strand, within HMPREF1058_RS13560 at 1441.203 kb on - strand, within HMPREF1058_RS13560 at 1441.203 kb on - strand, within HMPREF1058_RS13560 at 1441.293 kb on + strand, within HMPREF1058_RS13560 at 1441.331 kb on + strand, within HMPREF1058_RS13560 at 1441.331 kb on + strand, within HMPREF1058_RS13560 at 1441.334 kb on + strand, within HMPREF1058_RS13560 at 1441.336 kb on + strand, within HMPREF1058_RS13560 at 1441.456 kb on + strand, within HMPREF1058_RS13560 at 1441.457 kb on - strand, within HMPREF1058_RS13560 at 1441.481 kb on - strand, within HMPREF1058_RS13560 at 1441.761 kb on + strand, within HMPREF1058_RS13560 at 1441.761 kb on + strand at 1441.762 kb on - strand, within HMPREF1058_RS13560 at 1441.861 kb on - strand, within HMPREF1058_RS13560 at 1441.861 kb on - strand, within HMPREF1058_RS13560 at 1441.861 kb on - strand, within HMPREF1058_RS13560 at 1441.873 kb on + strand, within HMPREF1058_RS13560 at 1441.874 kb on - strand, within HMPREF1058_RS13560 at 1441.964 kb on + strand, within HMPREF1058_RS13560 at 1441.964 kb on + strand, within HMPREF1058_RS13560 at 1442.000 kb on + strand, within HMPREF1058_RS13560 at 1442.002 kb on + strand, within HMPREF1058_RS13560 at 1442.003 kb on - strand, within HMPREF1058_RS13560 at 1442.003 kb on - strand, within HMPREF1058_RS13560 at 1442.003 kb on - strand, within HMPREF1058_RS13560 at 1442.040 kb on - strand, within HMPREF1058_RS13560 at 1442.055 kb on + strand, within HMPREF1058_RS13560 at 1442.091 kb on - strand, within HMPREF1058_RS13560 at 1442.106 kb on - strand, within HMPREF1058_RS13560 at 1442.150 kb on + strand, within HMPREF1058_RS13560 at 1442.154 kb on + strand, within HMPREF1058_RS13560 at 1442.155 kb on - strand, within HMPREF1058_RS13560 at 1442.155 kb on - strand, within HMPREF1058_RS13560 at 1442.167 kb on - strand, within HMPREF1058_RS13560 at 1442.187 kb on - strand, within HMPREF1058_RS13560 at 1442.188 kb on + strand, within HMPREF1058_RS13560 at 1442.188 kb on + strand, within HMPREF1058_RS13560 at 1442.327 kb on + strand at 1442.352 kb on - strand at 1442.360 kb on + strand at 1442.360 kb on + strand at 1442.363 kb on + strand at 1442.396 kb on - strand at 1442.450 kb on + strand at 1442.451 kb on - strand at 1442.475 kb on + strand at 1442.476 kb on - strand at 1442.551 kb on - strand at 1442.619 kb on + strand at 1442.620 kb on - strand at 1442.620 kb on - strand at 1442.645 kb on + strand at 1442.661 kb on + strand at 1442.687 kb on + strand at 1442.707 kb on - strand at 1442.709 kb on - strand at 1442.783 kb on - strand at 1442.922 kb on + strand at 1442.923 kb on - strand at 1442.995 kb on - strand, within HMPREF1058_RS13555 at 1442.995 kb on - strand, within HMPREF1058_RS13555 at 1442.998 kb on - strand, within HMPREF1058_RS13555 at 1442.999 kb on + strand, within HMPREF1058_RS13555 at 1443.000 kb on - strand, within HMPREF1058_RS13555 at 1443.062 kb on + strand, within HMPREF1058_RS13555 at 1443.062 kb on + strand, within HMPREF1058_RS13555 at 1443.075 kb on - strand, within HMPREF1058_RS13555 at 1443.145 kb on - strand, within HMPREF1058_RS13555 at 1443.152 kb on + strand at 1443.171 kb on + strand, within HMPREF1058_RS13555 at 1443.303 kb on + strand, within HMPREF1058_RS13555 at 1443.303 kb on + strand, within HMPREF1058_RS13555 at 1443.303 kb on + strand, within HMPREF1058_RS13555 at 1443.303 kb on + strand, within HMPREF1058_RS13555 at 1443.304 kb on - strand, within HMPREF1058_RS13555 at 1443.351 kb on + strand, within HMPREF1058_RS13555 at 1443.352 kb on - strand, within HMPREF1058_RS13555 at 1443.382 kb on + strand, within HMPREF1058_RS13555 at 1443.383 kb on - strand, within HMPREF1058_RS13555 at 1443.384 kb on + strand, within HMPREF1058_RS13555 at 1443.495 kb on - strand, within HMPREF1058_RS13555 at 1443.519 kb on + strand, within HMPREF1058_RS13555 at 1443.527 kb on + strand, within HMPREF1058_RS13555 at 1443.568 kb on - strand, within HMPREF1058_RS13555 at 1443.595 kb on - strand, within HMPREF1058_RS13555
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 1,438,305 + HMPREF1058_RS13565 0.90 -0.9 1,438,350 + +0.4 1,438,397 - -0.3 1,438,517 + +0.1 1,438,547 + -1.5 1,438,548 - -0.6 1,438,567 + -0.6 1,438,573 - -1.0 1,438,602 + -0.2 1,438,603 - -2.0 1,438,603 - +0.2 1,438,606 + -0.0 1,438,606 + +1.6 1,438,608 + -1.2 1,438,644 - -0.5 1,438,670 - -0.4 1,438,684 - -1.1 1,438,708 + HMPREF1058_RS0119475 0.11 +0.7 1,438,763 + HMPREF1058_RS0119475 0.22 -0.3 1,438,868 - HMPREF1058_RS0119475 0.43 +1.9 1,438,936 + HMPREF1058_RS0119475 0.57 +0.0 1,438,936 + HMPREF1058_RS0119475 0.57 +1.3 1,438,974 + HMPREF1058_RS0119475 0.65 +0.5 1,438,975 - -0.4 1,438,975 - HMPREF1058_RS0119475 0.65 -0.8 1,439,078 - HMPREF1058_RS0119475 0.86 +0.6 1,439,078 - HMPREF1058_RS0119475 0.86 -3.7 1,439,101 + -0.1 1,439,156 + +1.5 1,439,157 - -0.6 1,439,159 - -1.6 1,439,159 - -0.5 1,439,206 + +3.2 1,439,207 - +0.0 1,439,207 - +0.3 1,439,218 - +0.0 1,439,218 - +0.2 1,439,278 + -0.6 1,439,278 + +0.2 1,439,365 + +0.3 1,439,447 + +0.0 1,439,447 + -0.7 1,439,447 + -0.1 1,439,511 - -0.1 1,439,514 + -0.0 1,439,514 + -0.9 1,439,515 - +0.4 1,439,792 + HMPREF1058_RS13560 0.15 +0.8 1,439,795 + HMPREF1058_RS13560 0.15 +0.2 1,439,927 + HMPREF1058_RS13560 0.19 +0.0 1,439,957 + HMPREF1058_RS13560 0.20 -0.2 1,439,983 - HMPREF1058_RS13560 0.21 -0.4 1,439,999 + HMPREF1058_RS13560 0.21 +1.0 1,440,000 + HMPREF1058_RS13560 0.21 -0.3 1,440,020 + HMPREF1058_RS13560 0.22 -0.6 1,440,020 + HMPREF1058_RS13560 0.22 +0.1 1,440,021 - HMPREF1058_RS13560 0.22 -0.5 1,440,042 - HMPREF1058_RS13560 0.22 +0.6 1,440,118 + -1.5 1,440,121 + HMPREF1058_RS13560 0.25 -1.2 1,440,122 - HMPREF1058_RS13560 0.25 +0.6 1,440,122 - HMPREF1058_RS13560 0.25 -0.5 1,440,215 + HMPREF1058_RS13560 0.27 -0.1 1,440,235 - HMPREF1058_RS13560 0.28 -0.6 1,440,248 - HMPREF1058_RS13560 0.28 +1.7 1,440,360 + HMPREF1058_RS13560 0.32 +0.5 1,440,539 - HMPREF1058_RS13560 0.37 -0.7 1,440,661 + HMPREF1058_RS13560 0.41 -0.2 1,440,661 + HMPREF1058_RS13560 0.41 -0.6 1,440,662 - HMPREF1058_RS13560 0.41 -0.1 1,440,662 - HMPREF1058_RS13560 0.41 -0.2 1,440,684 + HMPREF1058_RS13560 0.41 -0.4 1,440,684 + HMPREF1058_RS13560 0.41 +2.9 1,440,685 - HMPREF1058_RS13560 0.41 +0.0 1,440,792 - HMPREF1058_RS13560 0.45 +0.4 1,440,832 + HMPREF1058_RS13560 0.46 +0.4 1,440,925 + HMPREF1058_RS13560 0.49 -1.3 1,440,961 + HMPREF1058_RS13560 0.50 -1.3 1,440,967 + HMPREF1058_RS13560 0.50 -0.5 1,441,053 - HMPREF1058_RS13560 0.52 +3.5 1,441,069 + HMPREF1058_RS13560 0.53 +0.5 1,441,153 + HMPREF1058_RS13560 0.55 -0.1 1,441,178 + -1.3 1,441,202 + HMPREF1058_RS13560 0.57 +0.0 1,441,203 - HMPREF1058_RS13560 0.57 -2.0 1,441,203 - HMPREF1058_RS13560 0.57 -0.7 1,441,203 - HMPREF1058_RS13560 0.57 +0.8 1,441,293 + HMPREF1058_RS13560 0.59 -0.3 1,441,331 + HMPREF1058_RS13560 0.61 +0.1 1,441,331 + HMPREF1058_RS13560 0.61 -0.1 1,441,334 + HMPREF1058_RS13560 0.61 +0.4 1,441,336 + HMPREF1058_RS13560 0.61 -0.0 1,441,456 + HMPREF1058_RS13560 0.64 -0.8 1,441,457 - HMPREF1058_RS13560 0.64 -2.1 1,441,481 - HMPREF1058_RS13560 0.65 +0.0 1,441,761 + HMPREF1058_RS13560 0.73 -0.9 1,441,761 + -0.4 1,441,762 - HMPREF1058_RS13560 0.73 +0.4 1,441,861 - HMPREF1058_RS13560 0.76 +0.1 1,441,861 - HMPREF1058_RS13560 0.76 -0.8 1,441,861 - HMPREF1058_RS13560 0.76 -0.5 1,441,873 + HMPREF1058_RS13560 0.77 +0.3 1,441,874 - HMPREF1058_RS13560 0.77 -0.5 1,441,964 + HMPREF1058_RS13560 0.79 +0.6 1,441,964 + HMPREF1058_RS13560 0.79 +0.9 1,442,000 + HMPREF1058_RS13560 0.80 -0.0 1,442,002 + HMPREF1058_RS13560 0.81 -0.8 1,442,003 - HMPREF1058_RS13560 0.81 -0.4 1,442,003 - HMPREF1058_RS13560 0.81 +0.5 1,442,003 - HMPREF1058_RS13560 0.81 -1.4 1,442,040 - HMPREF1058_RS13560 0.82 +1.0 1,442,055 + HMPREF1058_RS13560 0.82 -0.2 1,442,091 - HMPREF1058_RS13560 0.83 +0.6 1,442,106 - HMPREF1058_RS13560 0.84 -0.6 1,442,150 + HMPREF1058_RS13560 0.85 +0.3 1,442,154 + HMPREF1058_RS13560 0.85 -0.4 1,442,155 - HMPREF1058_RS13560 0.85 +0.3 1,442,155 - HMPREF1058_RS13560 0.85 -0.1 1,442,167 - HMPREF1058_RS13560 0.85 -1.1 1,442,187 - HMPREF1058_RS13560 0.86 +1.0 1,442,188 + HMPREF1058_RS13560 0.86 -1.0 1,442,188 + HMPREF1058_RS13560 0.86 -1.5 1,442,327 + -0.0 1,442,352 - -0.2 1,442,360 + -0.1 1,442,360 + +2.2 1,442,363 + +1.2 1,442,396 - -0.1 1,442,450 + +0.9 1,442,451 - +0.2 1,442,475 + +0.1 1,442,476 - -0.5 1,442,551 - -0.1 1,442,619 + +0.6 1,442,620 - -0.3 1,442,620 - -0.3 1,442,645 + -2.4 1,442,661 + -1.4 1,442,687 + +0.1 1,442,707 - -0.4 1,442,709 - +0.4 1,442,783 - -0.7 1,442,922 + -0.4 1,442,923 - +1.1 1,442,995 - HMPREF1058_RS13555 0.12 -0.2 1,442,995 - HMPREF1058_RS13555 0.12 -0.2 1,442,998 - HMPREF1058_RS13555 0.12 +0.1 1,442,999 + HMPREF1058_RS13555 0.12 +2.2 1,443,000 - HMPREF1058_RS13555 0.12 -0.1 1,443,062 + HMPREF1058_RS13555 0.15 +1.2 1,443,062 + HMPREF1058_RS13555 0.15 +0.0 1,443,075 - HMPREF1058_RS13555 0.15 +0.6 1,443,145 - HMPREF1058_RS13555 0.18 -0.2 1,443,152 + +2.8 1,443,171 + HMPREF1058_RS13555 0.19 +0.9 1,443,303 + HMPREF1058_RS13555 0.24 +0.8 1,443,303 + HMPREF1058_RS13555 0.24 -0.0 1,443,303 + HMPREF1058_RS13555 0.24 +0.3 1,443,303 + HMPREF1058_RS13555 0.24 +0.1 1,443,304 - HMPREF1058_RS13555 0.24 -0.8 1,443,351 + HMPREF1058_RS13555 0.26 +0.3 1,443,352 - HMPREF1058_RS13555 0.26 -0.8 1,443,382 + HMPREF1058_RS13555 0.27 -1.5 1,443,383 - HMPREF1058_RS13555 0.27 -0.7 1,443,384 + HMPREF1058_RS13555 0.27 -0.3 1,443,495 - HMPREF1058_RS13555 0.32 -0.1 1,443,519 + HMPREF1058_RS13555 0.33 -2.6 1,443,527 + HMPREF1058_RS13555 0.33 -0.2 1,443,568 - HMPREF1058_RS13555 0.35 +0.7 1,443,595 - HMPREF1058_RS13555 0.36 +0.6
Or see this region's nucleotide sequence