Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13465

Experiment: Beta-Lactose 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Beta-Lactose 10 mM (C)
1,477,572	-		HMPREF1058_RS13470	0.30	-0.6
1,477,627	+		HMPREF1058_RS13470	0.35	+1.8
1,477,627	+		HMPREF1058_RS13470	0.35	+0.2
1,477,628	-		HMPREF1058_RS13470	0.35	+0.1
1,477,637	+		HMPREF1058_RS13470	0.36	+0.2
1,477,637	+		HMPREF1058_RS13470	0.36	-1.8
1,477,637	+		HMPREF1058_RS13470	0.36	-0.2
1,477,646	-		HMPREF1058_RS13470	0.37	-0.1
1,477,733	+		HMPREF1058_RS13470	0.44	-1.1
1,477,739	-		HMPREF1058_RS13470	0.45	+1.3
1,477,820	+		HMPREF1058_RS13470	0.51	-0.4
1,477,820	+		HMPREF1058_RS13470	0.51	-0.2
1,477,821	-		HMPREF1058_RS13470	0.51	+0.1
1,477,821	-		HMPREF1058_RS13470	0.51	+0.3
1,477,821	-		HMPREF1058_RS13470	0.51	-0.7
1,477,822	+		HMPREF1058_RS13470	0.51	+0.3
1,477,878	-		HMPREF1058_RS13470	0.56	+0.3
1,477,880	+		HMPREF1058_RS13470	0.56	-1.5
1,478,048	+		HMPREF1058_RS13470	0.70	+1.6
1,478,048	+		HMPREF1058_RS13470	0.70	-0.6
1,478,106	+		HMPREF1058_RS13470	0.75	-0.3
1,478,107	-		HMPREF1058_RS13470	0.75	-0.3
1,478,116	+		HMPREF1058_RS13470	0.76	-1.0
1,478,116	+		HMPREF1058_RS13470	0.76	-0.1
1,478,149	+		HMPREF1058_RS13470	0.79	+0.0
1,478,155	+		HMPREF1058_RS13470	0.79	+0.4
1,478,156	-		HMPREF1058_RS13470	0.80	-0.8
1,478,234	+		HMPREF1058_RS13470	0.86	-0.1
1,478,235	-		HMPREF1058_RS13470	0.86	-0.6
1,478,400	-				+2.4
1,478,403	-				-1.0
1,478,430	+				-1.4
1,478,577	+		HMPREF1058_RS13465	0.11	-0.3
1,478,577	+		HMPREF1058_RS13465	0.11	+0.1
1,478,578	-		HMPREF1058_RS13465	0.11	+0.2
1,478,713	-		HMPREF1058_RS13465	0.23	+0.3
1,478,713	-		HMPREF1058_RS13465	0.23	+0.7
1,478,782	-		HMPREF1058_RS13465	0.29	-0.8
1,478,814	-		HMPREF1058_RS13465	0.31	+0.6
1,478,818	-		HMPREF1058_RS13465	0.32	-1.3
1,478,832	+		HMPREF1058_RS13465	0.33	-0.2
1,478,836	-		HMPREF1058_RS13465	0.33	+1.0
1,478,849	+		HMPREF1058_RS13465	0.34	-0.3
1,478,850	-		HMPREF1058_RS13465	0.34	+0.7
1,478,850	-		HMPREF1058_RS13465	0.34	+1.9
1,478,852	-		HMPREF1058_RS13465	0.35	+0.3
1,478,864	-		HMPREF1058_RS13465	0.36	-0.4
1,478,864	-		HMPREF1058_RS13465	0.36	+0.8
1,478,869	-		HMPREF1058_RS13465	0.36	+0.4
1,478,870	+		HMPREF1058_RS13465	0.36	-0.8
1,478,885	-		HMPREF1058_RS13465	0.37	+0.1
1,478,911	+		HMPREF1058_RS13465	0.40	+0.3
1,478,912	-		HMPREF1058_RS13465	0.40	-0.8
1,478,963	+		HMPREF1058_RS13465	0.44	+0.1
1,478,964	-		HMPREF1058_RS13465	0.44	-0.5
1,478,969	+		HMPREF1058_RS13465	0.45	-0.6
1,478,971	+		HMPREF1058_RS13465	0.45	-0.4
1,479,073	+		HMPREF1058_RS13465	0.54	+0.4
1,479,073	+		HMPREF1058_RS13465	0.54	-0.6
1,479,077	+		HMPREF1058_RS13465	0.54	-0.6
1,479,079	+		HMPREF1058_RS13465	0.54	+0.1
1,479,079	+		HMPREF1058_RS13465	0.54	+0.2
1,479,080	-		HMPREF1058_RS13465	0.54	-0.6
1,479,141	+		HMPREF1058_RS13465	0.59	-0.2
1,479,143	+		HMPREF1058_RS13465	0.60	+0.0
1,479,254	+		HMPREF1058_RS13465	0.69	-0.9
1,479,263	+		HMPREF1058_RS13465	0.70	-0.8
1,479,263	+		HMPREF1058_RS13465	0.70	-0.3
1,479,264	-		HMPREF1058_RS13465	0.70	+0.1
1,479,265	+		HMPREF1058_RS13465	0.70	-0.6
1,479,267	+		HMPREF1058_RS13465	0.70	-1.4
1,479,267	+		HMPREF1058_RS13465	0.70	-0.1
1,479,267	+		HMPREF1058_RS13465	0.70	-1.1
1,479,268	-		HMPREF1058_RS13465	0.70	+1.2
1,479,268	-		HMPREF1058_RS13465	0.70	+0.1
1,479,268	-		HMPREF1058_RS13465	0.70	-0.3
1,479,277	+		HMPREF1058_RS13465	0.71	-0.9
1,479,400	+		HMPREF1058_RS13465	0.82	-0.3
1,479,400	+		HMPREF1058_RS13465	0.82	-0.0
1,479,400	+		HMPREF1058_RS13465	0.82	-0.5
1,479,401	-		HMPREF1058_RS13465	0.82	-0.6
1,479,401	-		HMPREF1058_RS13465	0.82	-0.2
1,479,401	-		HMPREF1058_RS13465	0.82	-0.6
1,479,404	+		HMPREF1058_RS13465	0.82	-0.3
1,479,404	+		HMPREF1058_RS13465	0.82	-0.4
1,479,404	+		HMPREF1058_RS13465	0.82	+0.2
1,479,404	+		HMPREF1058_RS13465	0.82	-1.8
1,479,405	-		HMPREF1058_RS13465	0.82	+0.6
1,479,405	-		HMPREF1058_RS13465	0.82	-0.9
1,479,405	-		HMPREF1058_RS13465	0.82	-0.5
1,479,405	-		HMPREF1058_RS13465	0.82	-0.9
1,479,473	+		HMPREF1058_RS13465	0.88	+0.2
1,479,479	-		HMPREF1058_RS13465	0.88	-0.9
1,479,519	-				-0.6
1,479,540	+				-0.4
1,479,590	+				-0.8
1,479,592	+				-0.5
1,479,593	-				+0.4
1,479,603	+				-0.4
1,479,610	-				+0.1
1,479,615	-				-1.2
1,479,718	+				+0.8
1,479,825	+				+0.4
1,479,830	-				-0.8
1,479,831	+				-0.3
1,479,869	-				-1.8
1,479,886	+				-1.2
1,479,923	+				+0.5
1,479,924	-				-0.4
1,479,928	-				+1.2
1,480,073	-		HMPREF1058_RS13460	0.10	+0.2
1,480,217	+		HMPREF1058_RS13460	0.15	-1.6
1,480,219	+		HMPREF1058_RS13460	0.15	-1.6
1,480,219	+		HMPREF1058_RS13460	0.15	+2.2
1,480,262	-		HMPREF1058_RS13460	0.16	-0.5
1,480,270	+		HMPREF1058_RS13460	0.16	+0.2
1,480,347	-				+0.6
1,480,347	-		HMPREF1058_RS13460	0.19	-0.1
1,480,351	+		HMPREF1058_RS13460	0.19	-1.0
1,480,352	-		HMPREF1058_RS13460	0.19	+1.0
1,480,353	+		HMPREF1058_RS13460	0.19	-0.2
1,480,391	-		HMPREF1058_RS13460	0.20	+0.0
1,480,412	+		HMPREF1058_RS13460	0.21	+0.7
1,480,412	+		HMPREF1058_RS13460	0.21	-0.5
1,480,412	+		HMPREF1058_RS13460	0.21	+0.2
1,480,412	+		HMPREF1058_RS13460	0.21	-0.9
1,480,412	+		HMPREF1058_RS13460	0.21	-1.8
1,480,413	-		HMPREF1058_RS13460	0.21	-0.4
1,480,413	-		HMPREF1058_RS13460	0.21	+0.0
1,480,435	+		HMPREF1058_RS13460	0.21	-0.5
1,480,456	-		HMPREF1058_RS13460	0.22	-0.8
1,480,460	-		HMPREF1058_RS13460	0.22	+0.6
1,480,492	-		HMPREF1058_RS13460	0.23	-0.1
1,480,499	-		HMPREF1058_RS13460	0.23	+1.1