Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13445

Experiment: Beta-Lactose 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Beta-Lactose 10 mM (C)
1,487,968	+		HMPREF1058_RS13450	0.83	+1.9
1,488,052	+		HMPREF1058_RS13450	0.86	+0.2
1,488,086	+		HMPREF1058_RS13450	0.87	+0.3
1,488,188	-				-0.6
1,488,302	-				+0.5
1,488,304	+				-0.3
1,488,304	+				-0.9
1,488,304	+				+0.4
1,488,305	-				-0.5
1,488,305	-				-1.6
1,488,305	-				-0.2
1,488,305	-				+0.7
1,488,332	+				-0.2
1,488,463	+				-0.3
1,488,473	-				-0.6
1,488,583	-				+2.9
1,488,592	-				-0.2
1,488,592	-				+1.2
1,488,593	+				-0.6
1,488,593	+				+0.4
1,488,638	+				-0.6
1,488,640	+				+0.1
1,488,641	-				-2.1
1,488,641	-				+0.7
1,488,693	+				+1.5
1,488,693	+				+0.6
1,488,747	+				-0.1
1,488,752	+				-0.9
1,488,793	-				-0.8
1,488,796	+				-0.4
1,488,797	-				+0.4
1,488,809	+				+0.0
1,488,821	+				-2.2
1,488,829	+				+0.2
1,488,847	-				-0.1
1,488,869	+				+1.0
1,488,894	-				+1.5
1,488,894	-				+0.6
1,488,904	+				-0.2
1,488,934	-				+0.2
1,488,987	+				-0.7
1,488,990	+				-0.6
1,488,991	-				+0.2
1,489,097	+				+3.0
1,489,098	-				+0.9
1,489,133	+				+0.1
1,489,134	-				-1.3
1,489,153	+				-2.1
1,489,154	-				+0.5
1,489,154	-				+0.7
1,489,154	-				-0.3
1,489,154	-				-0.2
1,489,281	-		HMPREF1058_RS13445	0.11	-0.1
1,489,372	-		HMPREF1058_RS13445	0.14	-1.3
1,489,372	-		HMPREF1058_RS13445	0.14	+0.6
1,489,461	+		HMPREF1058_RS13445	0.17	-1.8
1,489,461	+		HMPREF1058_RS13445	0.17	-0.5
1,489,462	-		HMPREF1058_RS13445	0.17	+0.2
1,489,474	-		HMPREF1058_RS13445	0.18	-2.2
1,489,533	+		HMPREF1058_RS13445	0.20	-0.1
1,489,534	-		HMPREF1058_RS13445	0.20	-1.0
1,489,534	-		HMPREF1058_RS13445	0.20	+2.3
1,489,534	-		HMPREF1058_RS13445	0.20	-0.9
1,489,534	-		HMPREF1058_RS13445	0.20	-0.3
1,489,622	+		HMPREF1058_RS13445	0.23	+0.5
1,489,633	+		HMPREF1058_RS13445	0.23	-0.2
1,489,634	-		HMPREF1058_RS13445	0.23	-1.0
1,489,695	-		HMPREF1058_RS13445	0.25	-0.9
1,489,719	+		HMPREF1058_RS13445	0.26	+0.4
1,489,853	+		HMPREF1058_RS13445	0.31	-0.8
1,489,854	-		HMPREF1058_RS13445	0.31	-1.1
1,489,854	-		HMPREF1058_RS13445	0.31	+0.0
1,489,856	+		HMPREF1058_RS13445	0.31	+0.6
1,489,857	-		HMPREF1058_RS13445	0.31	+0.9
1,489,931	+		HMPREF1058_RS13445	0.34	-1.3
1,489,931	+		HMPREF1058_RS13445	0.34	+0.5
1,489,931	+		HMPREF1058_RS13445	0.34	-0.2
1,489,932	-		HMPREF1058_RS13445	0.34	-0.3
1,489,954	+		HMPREF1058_RS13445	0.34	+0.8
1,490,001	+		HMPREF1058_RS13445	0.36	+0.2
1,490,037	+		HMPREF1058_RS13445	0.37	+1.6
1,490,037	+		HMPREF1058_RS13445	0.37	-1.2
1,490,037	+		HMPREF1058_RS13445	0.37	-0.3
1,490,037	+		HMPREF1058_RS13445	0.37	-0.3
1,490,099	+		HMPREF1058_RS13445	0.39	+0.1
1,490,099	+		HMPREF1058_RS13445	0.39	+0.5
1,490,136	+		HMPREF1058_RS13445	0.41	-0.2
1,490,183	-		HMPREF1058_RS13445	0.42	+0.5
1,490,233	-		HMPREF1058_RS13445	0.44	+0.3
1,490,258	-		HMPREF1058_RS13445	0.45	-1.1
1,490,337	-		HMPREF1058_RS13445	0.48	-0.4
1,490,349	-		HMPREF1058_RS13445	0.48	-1.4
1,490,396	+		HMPREF1058_RS13445	0.50	+0.2
1,490,554	+		HMPREF1058_RS13445	0.55	+2.4
1,490,554	+		HMPREF1058_RS13445	0.55	+2.2
1,490,565	-		HMPREF1058_RS13445	0.56	+1.5
1,490,572	-		HMPREF1058_RS13445	0.56	+0.5
1,490,584	+		HMPREF1058_RS13445	0.56	+0.9
1,490,585	-		HMPREF1058_RS13445	0.56	-0.0
1,490,645	+		HMPREF1058_RS13445	0.59	-0.5
1,490,646	-		HMPREF1058_RS13445	0.59	+0.8
1,490,690	+		HMPREF1058_RS13445	0.60	-0.7
1,490,691	-		HMPREF1058_RS13445	0.60	+0.4
1,490,711	-		HMPREF1058_RS13445	0.61	+1.6
1,490,738	+		HMPREF1058_RS13445	0.62	-1.7
1,490,757	-		HMPREF1058_RS13445	0.62	-0.7
1,490,865	+		HMPREF1058_RS13445	0.66	-0.2
1,490,940	+		HMPREF1058_RS13445	0.69	+0.7
1,490,984	+		HMPREF1058_RS13445	0.70	-1.8
1,491,074	-		HMPREF1058_RS13445	0.73	-1.4
1,491,131	-		HMPREF1058_RS13445	0.75	+1.4
1,491,135	+		HMPREF1058_RS13445	0.76	+2.2
1,491,136	-		HMPREF1058_RS13445	0.76	-1.5
1,491,174	+		HMPREF1058_RS13445	0.77	+0.6
1,491,175	-		HMPREF1058_RS13445	0.77	+0.1
1,491,180	+		HMPREF1058_RS13445	0.77	-1.0
1,491,205	+		HMPREF1058_RS13445	0.78	-1.1
1,491,298	+		HMPREF1058_RS13445	0.81	+0.3
1,491,299	-		HMPREF1058_RS13445	0.81	-0.7
1,491,312	+		HMPREF1058_RS13445	0.82	-0.0
1,491,313	-		HMPREF1058_RS13445	0.82	+1.3
1,491,412	-		HMPREF1058_RS13445	0.85	+0.2
1,491,439	-		HMPREF1058_RS13445	0.86	-0.9
1,491,514	+		HMPREF1058_RS13445	0.89	-0.4
1,491,514	+		HMPREF1058_RS13445	0.89	-0.3
1,491,523	-		HMPREF1058_RS13445	0.89	-0.6
1,491,523	-		HMPREF1058_RS13445	0.89	+0.7
1,491,605	+				-1.3
1,491,605	+				-0.3
1,491,689	+				+0.3
1,491,759	+				-0.2
1,491,813	+				-2.4
1,491,840	-				+0.2
1,491,861	+				+0.2
1,491,924	-				-0.6
1,491,948	-				+0.3
1,491,948	-				+1.1
1,492,037	+				+0.1
1,492,038	-				+0.5
1,492,059	+				-0.4
1,492,065	-				+0.2
1,492,077	-				+0.7
1,492,086	+				-0.7
1,492,087	-				-0.4
1,492,087	-				-0.6
1,492,099	-				+0.3
1,492,285	+		HMPREF1058_RS13440	0.13	+0.2
1,492,287	+		HMPREF1058_RS13440	0.13	-0.5
1,492,288	-		HMPREF1058_RS13440	0.13	+0.4
1,492,290	-		HMPREF1058_RS13440	0.13	+0.5
1,492,383	+		HMPREF1058_RS13440	0.21	+0.6
1,492,492	-		HMPREF1058_RS13440	0.30	-0.6
1,492,511	+		HMPREF1058_RS13440	0.31	+0.3
1,492,628	-		HMPREF1058_RS13440	0.41	-0.9
1,492,663	-		HMPREF1058_RS13440	0.43	+0.9
1,492,664	+		HMPREF1058_RS13440	0.43	+0.4
1,492,665	-		HMPREF1058_RS13440	0.44	-0.3
1,492,716	-		HMPREF1058_RS13440	0.48	-0.1
1,492,746	-		HMPREF1058_RS13440	0.50	-1.4
1,492,748	+		HMPREF1058_RS13440	0.50	+0.5
1,492,749	-		HMPREF1058_RS13440	0.50	+0.1
1,492,833	+		HMPREF1058_RS13440	0.57	+2.0
1,492,834	-		HMPREF1058_RS13440	0.57	+0.0
1,492,834	-		HMPREF1058_RS13440	0.57	-1.5