Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13380

Experiment: Beta-Lactose 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Beta-Lactose 10 mM (C)
1,512,780	+		HMPREF1058_RS13385	0.60	+0.0
1,512,780	+		HMPREF1058_RS13385	0.60	+0.3
1,512,786	+		HMPREF1058_RS13385	0.61	+0.3
1,512,787	-		HMPREF1058_RS13385	0.61	-0.0
1,512,891	-		HMPREF1058_RS13385	0.67	+1.7
1,512,891	-		HMPREF1058_RS13385	0.67	-0.6
1,512,894	+		HMPREF1058_RS13385	0.67	-0.5
1,512,977	+		HMPREF1058_RS13385	0.71	+0.6
1,512,978	-		HMPREF1058_RS13385	0.71	-0.9
1,512,978	-		HMPREF1058_RS13385	0.71	-0.5
1,512,980	+		HMPREF1058_RS13385	0.72	-1.7
1,512,980	+		HMPREF1058_RS13385	0.72	-1.8
1,512,981	-		HMPREF1058_RS13385	0.72	+0.0
1,513,005	+		HMPREF1058_RS13385	0.73	+0.4
1,513,047	-		HMPREF1058_RS13385	0.75	-1.9
1,513,048	+		HMPREF1058_RS13385	0.75	+2.2
1,513,107	+		HMPREF1058_RS13385	0.79	-0.1
1,513,108	-		HMPREF1058_RS13385	0.79	-0.4
1,513,114	+		HMPREF1058_RS13385	0.79	+0.8
1,513,138	-		HMPREF1058_RS13385	0.80	+0.6
1,513,172	-		HMPREF1058_RS13385	0.82	+0.0
1,513,197	+		HMPREF1058_RS13385	0.84	+0.3
1,513,344	+				-0.2
1,513,345	-				-0.4
1,513,345	-				-1.2
1,513,345	-				-0.1
1,513,448	+				-0.3
1,513,479	+				+0.5
1,513,479	+				-1.1
1,513,479	+				+0.7
1,513,480	-				-0.6
1,513,488	+				+0.3
1,513,536	+				-1.5
1,513,560	+				-0.1
1,513,565	-				+0.2
1,513,578	+				+0.1
1,513,578	+				+0.0
1,513,579	-				-0.3
1,513,579	-				-0.9
1,513,623	+				-0.3
1,513,633	+				+0.7
1,513,654	+				+0.6
1,513,654	+				-0.4
1,513,655	-				-0.6
1,513,655	-				-0.4
1,513,656	+				+1.4
1,513,687	+				-0.3
1,513,693	-				-0.2
1,513,693	-				+0.1
1,513,800	+				+0.1
1,513,859	+				+0.5
1,513,987	+				-0.1
1,513,988	-				-0.8
1,513,991	+				-0.7
1,514,008	+				+0.4
1,514,009	-				-0.3
1,514,009	-				-1.0
1,514,010	+				+0.4
1,514,177	+		HMPREF1058_RS13380	0.15	+0.5
1,514,189	+		HMPREF1058_RS13380	0.15	-0.4
1,514,238	+		HMPREF1058_RS13380	0.17	+0.2
1,514,244	+		HMPREF1058_RS13380	0.17	+0.1
1,514,245	-		HMPREF1058_RS13380	0.17	-0.3
1,514,306	+		HMPREF1058_RS13380	0.19	-1.0
1,514,483	+		HMPREF1058_RS13380	0.26	-0.4
1,514,776	+		HMPREF1058_RS13380	0.36	-0.9
1,514,875	+		HMPREF1058_RS13380	0.39	-0.4
1,514,875	+		HMPREF1058_RS13380	0.39	+0.1
1,514,900	+		HMPREF1058_RS13380	0.40	-0.1
1,514,901	-		HMPREF1058_RS13380	0.40	-0.6
1,514,901	-		HMPREF1058_RS13380	0.40	+0.2
1,514,974	-		HMPREF1058_RS13380	0.42	+0.6
1,515,039	-		HMPREF1058_RS13380	0.45	-0.1
1,515,143	+		HMPREF1058_RS13380	0.48	+0.2
1,515,178	+		HMPREF1058_RS13380	0.49	+0.3
1,515,179	-		HMPREF1058_RS13380	0.49	-1.0
1,515,184	-		HMPREF1058_RS13380	0.50	-0.0
1,515,184	-		HMPREF1058_RS13380	0.50	+0.2
1,515,187	+		HMPREF1058_RS13380	0.50	-0.7
1,515,187	+		HMPREF1058_RS13380	0.50	-0.6
1,515,216	-		HMPREF1058_RS13380	0.51	+0.8
1,515,378	+		HMPREF1058_RS13380	0.56	+2.2
1,515,379	-		HMPREF1058_RS13380	0.56	+1.2
1,515,414	-		HMPREF1058_RS13380	0.58	+2.2
1,515,494	-		HMPREF1058_RS13380	0.60	+0.6
1,515,505	+		HMPREF1058_RS13380	0.61	+0.3
1,515,505	+		HMPREF1058_RS13380	0.61	-0.7
1,515,505	+		HMPREF1058_RS13380	0.61	+0.3
1,515,505	+		HMPREF1058_RS13380	0.61	-0.0
1,515,506	-		HMPREF1058_RS13380	0.61	-0.3
1,515,506	-		HMPREF1058_RS13380	0.61	-0.1
1,515,506	-		HMPREF1058_RS13380	0.61	+0.6
1,515,509	+		HMPREF1058_RS13380	0.61	+0.4
1,515,509	+		HMPREF1058_RS13380	0.61	+0.3
1,515,510	-		HMPREF1058_RS13380	0.61	+0.2
1,515,512	-		HMPREF1058_RS13380	0.61	-0.7
1,515,514	+		HMPREF1058_RS13380	0.61	+0.6
1,515,551	-		HMPREF1058_RS13380	0.62	+0.7
1,515,690	+		HMPREF1058_RS13380	0.67	-0.2
1,515,691	-		HMPREF1058_RS13380	0.67	-0.3
1,515,727	+		HMPREF1058_RS13380	0.68	+0.3
1,515,728	-		HMPREF1058_RS13380	0.68	+1.3
1,515,743	+		HMPREF1058_RS13380	0.69	-0.7
1,515,743	+		HMPREF1058_RS13380	0.69	-0.1
1,515,870	+		HMPREF1058_RS13380	0.73	-0.7
1,516,038	-		HMPREF1058_RS13380	0.79	-1.1
1,516,062	+		HMPREF1058_RS13380	0.80	-0.1
1,516,091	+		HMPREF1058_RS13380	0.81	-0.0
1,516,092	-		HMPREF1058_RS13380	0.81	+1.1
1,516,092	-		HMPREF1058_RS13380	0.81	-0.6
1,516,092	-		HMPREF1058_RS13380	0.81	+0.4
1,516,304	-		HMPREF1058_RS13380	0.88	+0.8
1,516,367	-				+0.6
1,516,370	+				-0.5
1,516,412	+				+0.0
1,516,429	+				+0.2
1,516,507	+				-0.1
1,516,507	+				-0.5
1,516,510	-				+0.3
1,516,510	-				+0.3
1,516,617	+				-0.7
1,516,618	-				+0.2
1,516,665	-				+0.2
1,516,797	+				+0.4
1,516,810	-				-0.1
1,516,811	+				-0.4
1,516,811	+				-0.9
1,516,832	-		HMPREF1058_RS13375	0.11	-0.1
1,516,954	+		HMPREF1058_RS13375	0.20	-0.8
1,516,954	+		HMPREF1058_RS13375	0.20	-1.0
1,517,054	+		HMPREF1058_RS13375	0.28	-0.2
1,517,054	+		HMPREF1058_RS13375	0.28	+0.1
1,517,055	-		HMPREF1058_RS13375	0.28	-0.2
1,517,215	-		HMPREF1058_RS13375	0.40	+0.2
1,517,231	+		HMPREF1058_RS13375	0.41	-0.4
1,517,231	+		HMPREF1058_RS13375	0.41	+0.3
1,517,232	-		HMPREF1058_RS13375	0.41	-0.3
1,517,324	-		HMPREF1058_RS13375	0.48	-0.7
1,517,325	+		HMPREF1058_RS13375	0.48	-0.5
1,517,418	-		HMPREF1058_RS13375	0.56	+2.2
1,517,418	-		HMPREF1058_RS13375	0.56	-1.6
1,517,446	+		HMPREF1058_RS13375	0.58	+1.3
1,517,448	+		HMPREF1058_RS13375	0.58	-0.0
1,517,448	+		HMPREF1058_RS13375	0.58	-0.4
1,517,448	+		HMPREF1058_RS13375	0.58	-0.2
1,517,448	+		HMPREF1058_RS13375	0.58	-0.1
1,517,448	+		HMPREF1058_RS13375	0.58	-0.9
1,517,448	+		HMPREF1058_RS13375	0.58	+0.2
1,517,478	-		HMPREF1058_RS13375	0.60	-0.9
1,517,478	-		HMPREF1058_RS13375	0.60	-0.5
1,517,613	+		HMPREF1058_RS13375	0.70	+1.1