Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS13345 and HMPREF1058_RS13340 are separated by 102 nucleotides HMPREF1058_RS13340 and HMPREF1058_RS13335 are separated by 103 nucleotides HMPREF1058_RS13335 and HMPREF1058_RS13330 overlap by 10 nucleotides HMPREF1058_RS13330 and HMPREF1058_RS13325 overlap by 4 nucleotides
HMPREF1058_RS13345: HMPREF1058_RS13345 - TrkH family potassium uptake protein, at 1,525,573 to 1,527,027
_RS13345
HMPREF1058_RS13340: HMPREF1058_RS13340 - hypothetical protein, at 1,527,130 to 1,527,507
_RS13340
HMPREF1058_RS13335: HMPREF1058_RS13335 - NADH-quinone oxidoreductase subunit A, at 1,527,611 to 1,527,961
_RS13335
HMPREF1058_RS13330: HMPREF1058_RS13330 - NADH-quinone oxidoreductase subunit B, at 1,527,952 to 1,528,548
_RS13330
HMPREF1058_RS13325: HMPREF1058_RS13325 - NADH-quinone oxidoreductase subunit D, at 1,528,545 to 1,530,104
_RS13325
Position (kb) 1527
1528
1529 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1526.978 kb on + strand at 1527.058 kb on - strand at 1527.061 kb on + strand at 1527.135 kb on + strand at 1527.155 kb on + strand at 1527.155 kb on + strand at 1527.155 kb on + strand at 1527.155 kb on + strand at 1527.156 kb on - strand at 1527.156 kb on - strand at 1527.156 kb on - strand at 1527.158 kb on - strand at 1527.159 kb on + strand at 1527.159 kb on + strand at 1527.164 kb on + strand at 1527.168 kb on - strand, within HMPREF1058_RS13340 at 1527.168 kb on - strand, within HMPREF1058_RS13340 at 1527.180 kb on + strand, within HMPREF1058_RS13340 at 1527.312 kb on + strand, within HMPREF1058_RS13340 at 1527.313 kb on - strand, within HMPREF1058_RS13340 at 1527.330 kb on - strand, within HMPREF1058_RS13340 at 1527.398 kb on + strand, within HMPREF1058_RS13340 at 1527.428 kb on + strand, within HMPREF1058_RS13340 at 1527.472 kb on + strand at 1527.473 kb on - strand at 1527.475 kb on + strand at 1527.475 kb on + strand at 1527.475 kb on + strand at 1527.475 kb on + strand at 1527.476 kb on - strand at 1527.477 kb on + strand at 1527.477 kb on + strand at 1527.477 kb on + strand at 1527.478 kb on - strand at 1527.478 kb on - strand at 1527.481 kb on + strand at 1527.482 kb on - strand at 1527.549 kb on - strand at 1527.619 kb on + strand at 1527.619 kb on + strand at 1527.627 kb on + strand at 1527.627 kb on + strand at 1527.628 kb on - strand at 1527.658 kb on - strand, within HMPREF1058_RS13335 at 1527.777 kb on + strand, within HMPREF1058_RS13335 at 1527.778 kb on - strand, within HMPREF1058_RS13335 at 1527.783 kb on - strand, within HMPREF1058_RS13335 at 1527.785 kb on + strand, within HMPREF1058_RS13335 at 1527.786 kb on - strand, within HMPREF1058_RS13335 at 1527.789 kb on + strand, within HMPREF1058_RS13335 at 1527.835 kb on - strand, within HMPREF1058_RS13335 at 1527.872 kb on + strand, within HMPREF1058_RS13335 at 1527.909 kb on + strand, within HMPREF1058_RS13335 at 1527.974 kb on + strand at 1527.982 kb on - strand at 1527.982 kb on - strand at 1528.012 kb on + strand, within HMPREF1058_RS13330 at 1528.012 kb on + strand, within HMPREF1058_RS13330 at 1528.120 kb on - strand, within HMPREF1058_RS13330 at 1528.230 kb on + strand, within HMPREF1058_RS13330 at 1528.230 kb on + strand, within HMPREF1058_RS13330 at 1528.230 kb on + strand, within HMPREF1058_RS13330 at 1528.251 kb on + strand, within HMPREF1058_RS13330 at 1528.252 kb on - strand, within HMPREF1058_RS13330 at 1528.252 kb on - strand, within HMPREF1058_RS13330 at 1528.277 kb on + strand, within HMPREF1058_RS13330 at 1528.277 kb on + strand, within HMPREF1058_RS13330 at 1528.278 kb on - strand, within HMPREF1058_RS13330 at 1528.278 kb on - strand, within HMPREF1058_RS13330 at 1528.289 kb on - strand, within HMPREF1058_RS13330 at 1528.312 kb on + strand, within HMPREF1058_RS13330 at 1528.373 kb on + strand, within HMPREF1058_RS13330 at 1528.409 kb on + strand, within HMPREF1058_RS13330 at 1528.409 kb on + strand, within HMPREF1058_RS13330 at 1528.409 kb on + strand, within HMPREF1058_RS13330 at 1528.409 kb on - strand, within HMPREF1058_RS13330 at 1528.411 kb on + strand, within HMPREF1058_RS13330 at 1528.451 kb on - strand, within HMPREF1058_RS13330 at 1528.565 kb on - strand at 1528.565 kb on - strand at 1528.617 kb on - strand at 1528.667 kb on - strand at 1528.667 kb on - strand at 1528.667 kb on - strand at 1528.677 kb on + strand at 1528.678 kb on - strand at 1528.698 kb on - strand at 1528.762 kb on + strand, within HMPREF1058_RS13325 at 1528.762 kb on + strand, within HMPREF1058_RS13325 at 1528.762 kb on + strand, within HMPREF1058_RS13325 at 1528.770 kb on - strand, within HMPREF1058_RS13325 at 1528.806 kb on + strand, within HMPREF1058_RS13325 at 1528.831 kb on + strand, within HMPREF1058_RS13325 at 1528.831 kb on + strand, within HMPREF1058_RS13325 at 1528.899 kb on + strand, within HMPREF1058_RS13325 at 1528.959 kb on + strand, within HMPREF1058_RS13325 at 1528.960 kb on - strand, within HMPREF1058_RS13325 at 1528.960 kb on - strand, within HMPREF1058_RS13325 at 1528.961 kb on + strand, within HMPREF1058_RS13325 at 1528.962 kb on - strand, within HMPREF1058_RS13325 at 1528.962 kb on - strand, within HMPREF1058_RS13325 at 1528.963 kb on + strand, within HMPREF1058_RS13325 at 1528.969 kb on + strand, within HMPREF1058_RS13325 at 1529.025 kb on + strand, within HMPREF1058_RS13325 at 1529.027 kb on + strand, within HMPREF1058_RS13325 at 1529.038 kb on + strand, within HMPREF1058_RS13325 at 1529.169 kb on - strand, within HMPREF1058_RS13325 at 1529.172 kb on + strand, within HMPREF1058_RS13325 at 1529.212 kb on + strand, within HMPREF1058_RS13325 at 1529.243 kb on + strand, within HMPREF1058_RS13325 at 1529.244 kb on - strand, within HMPREF1058_RS13325 at 1529.269 kb on + strand, within HMPREF1058_RS13325 at 1529.269 kb on + strand, within HMPREF1058_RS13325 at 1529.275 kb on + strand, within HMPREF1058_RS13325 at 1529.276 kb on - strand, within HMPREF1058_RS13325 at 1529.276 kb on - strand, within HMPREF1058_RS13325 at 1529.292 kb on + strand, within HMPREF1058_RS13325 at 1529.292 kb on + strand, within HMPREF1058_RS13325 at 1529.326 kb on + strand, within HMPREF1058_RS13325 at 1529.327 kb on - strand, within HMPREF1058_RS13325 at 1529.463 kb on + strand, within HMPREF1058_RS13325 at 1529.463 kb on + strand, within HMPREF1058_RS13325 at 1529.464 kb on - strand, within HMPREF1058_RS13325 at 1529.464 kb on - strand, within HMPREF1058_RS13325 at 1529.464 kb on - strand, within HMPREF1058_RS13325 at 1529.464 kb on - strand, within HMPREF1058_RS13325 at 1529.465 kb on + strand, within HMPREF1058_RS13325 at 1529.465 kb on + strand, within HMPREF1058_RS13325 at 1529.510 kb on - strand, within HMPREF1058_RS13325
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 1,526,978 + +0.2 1,527,058 - -0.1 1,527,061 + -1.3 1,527,135 + +2.2 1,527,155 + +0.5 1,527,155 + -0.4 1,527,155 + -0.0 1,527,155 + -0.2 1,527,156 - -0.5 1,527,156 - -1.1 1,527,156 - -0.1 1,527,158 - +1.8 1,527,159 + -0.3 1,527,159 + -0.6 1,527,164 + -0.3 1,527,168 - HMPREF1058_RS13340 0.10 -0.7 1,527,168 - HMPREF1058_RS13340 0.10 +0.6 1,527,180 + HMPREF1058_RS13340 0.13 -0.1 1,527,312 + HMPREF1058_RS13340 0.48 -0.4 1,527,313 - HMPREF1058_RS13340 0.48 +0.5 1,527,330 - HMPREF1058_RS13340 0.53 +0.5 1,527,398 + HMPREF1058_RS13340 0.71 +0.6 1,527,428 + HMPREF1058_RS13340 0.79 +0.3 1,527,472 + +0.1 1,527,473 - -0.0 1,527,475 + +0.6 1,527,475 + +0.4 1,527,475 + +1.2 1,527,475 + +0.0 1,527,476 - -0.5 1,527,477 + +1.0 1,527,477 + +1.6 1,527,477 + +1.2 1,527,478 - -0.4 1,527,478 - -0.9 1,527,481 + -0.1 1,527,482 - +0.1 1,527,549 - -1.7 1,527,619 + -0.1 1,527,619 + +1.2 1,527,627 + +0.0 1,527,627 + +0.2 1,527,628 - -0.0 1,527,658 - HMPREF1058_RS13335 0.13 -1.2 1,527,777 + HMPREF1058_RS13335 0.47 +1.3 1,527,778 - HMPREF1058_RS13335 0.48 +0.6 1,527,783 - HMPREF1058_RS13335 0.49 +0.6 1,527,785 + HMPREF1058_RS13335 0.50 +1.1 1,527,786 - HMPREF1058_RS13335 0.50 -0.4 1,527,789 + HMPREF1058_RS13335 0.51 -1.9 1,527,835 - HMPREF1058_RS13335 0.64 -0.3 1,527,872 + HMPREF1058_RS13335 0.74 +0.6 1,527,909 + HMPREF1058_RS13335 0.85 +0.9 1,527,974 + +0.7 1,527,982 - -0.8 1,527,982 - -0.7 1,528,012 + HMPREF1058_RS13330 0.10 +1.1 1,528,012 + HMPREF1058_RS13330 0.10 +1.2 1,528,120 - HMPREF1058_RS13330 0.28 -1.2 1,528,230 + HMPREF1058_RS13330 0.47 +2.1 1,528,230 + HMPREF1058_RS13330 0.47 +0.8 1,528,230 + HMPREF1058_RS13330 0.47 +0.9 1,528,251 + HMPREF1058_RS13330 0.50 +0.5 1,528,252 - HMPREF1058_RS13330 0.50 -0.7 1,528,252 - HMPREF1058_RS13330 0.50 -2.0 1,528,277 + HMPREF1058_RS13330 0.54 +1.2 1,528,277 + HMPREF1058_RS13330 0.54 +0.4 1,528,278 - HMPREF1058_RS13330 0.55 -0.2 1,528,278 - HMPREF1058_RS13330 0.55 -1.6 1,528,289 - HMPREF1058_RS13330 0.56 -0.3 1,528,312 + HMPREF1058_RS13330 0.60 +0.7 1,528,373 + HMPREF1058_RS13330 0.71 +1.3 1,528,409 + HMPREF1058_RS13330 0.77 +2.2 1,528,409 + HMPREF1058_RS13330 0.77 +1.8 1,528,409 + HMPREF1058_RS13330 0.77 +0.7 1,528,409 - HMPREF1058_RS13330 0.77 -0.1 1,528,411 + HMPREF1058_RS13330 0.77 +1.1 1,528,451 - HMPREF1058_RS13330 0.84 -0.0 1,528,565 - -0.0 1,528,565 - -1.0 1,528,617 - -0.3 1,528,667 - +0.2 1,528,667 - +0.3 1,528,667 - +0.4 1,528,677 + +0.3 1,528,678 - +0.2 1,528,698 - -1.0 1,528,762 + HMPREF1058_RS13325 0.14 -0.1 1,528,762 + HMPREF1058_RS13325 0.14 +0.5 1,528,762 + HMPREF1058_RS13325 0.14 +0.1 1,528,770 - HMPREF1058_RS13325 0.14 +0.2 1,528,806 + HMPREF1058_RS13325 0.17 +0.6 1,528,831 + HMPREF1058_RS13325 0.18 +0.3 1,528,831 + HMPREF1058_RS13325 0.18 -0.2 1,528,899 + HMPREF1058_RS13325 0.23 -0.4 1,528,959 + HMPREF1058_RS13325 0.27 +0.2 1,528,960 - HMPREF1058_RS13325 0.27 -0.9 1,528,960 - HMPREF1058_RS13325 0.27 -0.3 1,528,961 + HMPREF1058_RS13325 0.27 -0.3 1,528,962 - HMPREF1058_RS13325 0.27 -0.2 1,528,962 - HMPREF1058_RS13325 0.27 +1.9 1,528,963 + HMPREF1058_RS13325 0.27 +0.3 1,528,969 + HMPREF1058_RS13325 0.27 -0.1 1,529,025 + HMPREF1058_RS13325 0.31 -0.1 1,529,027 + HMPREF1058_RS13325 0.31 -0.2 1,529,038 + HMPREF1058_RS13325 0.32 -0.1 1,529,169 - HMPREF1058_RS13325 0.40 -1.6 1,529,172 + HMPREF1058_RS13325 0.40 +0.2 1,529,212 + HMPREF1058_RS13325 0.43 +0.0 1,529,243 + HMPREF1058_RS13325 0.45 +0.7 1,529,244 - HMPREF1058_RS13325 0.45 +0.0 1,529,269 + HMPREF1058_RS13325 0.46 +0.9 1,529,269 + HMPREF1058_RS13325 0.46 +0.5 1,529,275 + HMPREF1058_RS13325 0.47 -0.0 1,529,276 - HMPREF1058_RS13325 0.47 +0.3 1,529,276 - HMPREF1058_RS13325 0.47 +0.7 1,529,292 + HMPREF1058_RS13325 0.48 -0.1 1,529,292 + HMPREF1058_RS13325 0.48 +0.4 1,529,326 + HMPREF1058_RS13325 0.50 +0.7 1,529,327 - HMPREF1058_RS13325 0.50 -2.3 1,529,463 + HMPREF1058_RS13325 0.59 +1.2 1,529,463 + HMPREF1058_RS13325 0.59 +0.6 1,529,464 - HMPREF1058_RS13325 0.59 -0.8 1,529,464 - HMPREF1058_RS13325 0.59 +0.7 1,529,464 - HMPREF1058_RS13325 0.59 -0.0 1,529,464 - HMPREF1058_RS13325 0.59 -0.6 1,529,465 + HMPREF1058_RS13325 0.59 -1.0 1,529,465 + HMPREF1058_RS13325 0.59 +1.2 1,529,510 - HMPREF1058_RS13325 0.62 -1.4
Or see this region's nucleotide sequence