Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119575 and HMPREF1058_RS12860 are separated by 238 nucleotides HMPREF1058_RS12860 and HMPREF1058_RS12855 are separated by 4 nucleotides HMPREF1058_RS12855 and HMPREF1058_RS12850 are separated by 110 nucleotides
HMPREF1058_RS0119575: HMPREF1058_RS0119575 - hypothetical protein, at 15,949 to 16,218
_RS0119575
HMPREF1058_RS12860: HMPREF1058_RS12860 - HAD hydrolase-like protein, at 16,457 to 17,095
_RS12860
HMPREF1058_RS12855: HMPREF1058_RS12855 - sugar O-acetyltransferase, at 17,100 to 17,696
_RS12855
HMPREF1058_RS12850: HMPREF1058_RS12850 - helix-turn-helix domain-containing protein, at 17,807 to 18,646
_RS12850
Position (kb) 17
18 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 16.187 kb on + strand, within HMPREF1058_RS0119575 at 16.188 kb on - strand, within HMPREF1058_RS0119575 at 16.234 kb on + strand at 16.262 kb on + strand at 16.263 kb on - strand at 16.412 kb on + strand at 16.413 kb on - strand at 16.418 kb on - strand at 16.451 kb on + strand at 16.452 kb on - strand at 16.452 kb on - strand at 16.619 kb on + strand, within HMPREF1058_RS12860 at 16.619 kb on + strand, within HMPREF1058_RS12860 at 16.619 kb on + strand, within HMPREF1058_RS12860 at 16.620 kb on - strand, within HMPREF1058_RS12860 at 16.621 kb on + strand, within HMPREF1058_RS12860 at 16.621 kb on + strand, within HMPREF1058_RS12860 at 16.621 kb on + strand, within HMPREF1058_RS12860 at 16.622 kb on - strand, within HMPREF1058_RS12860 at 16.623 kb on + strand, within HMPREF1058_RS12860 at 16.623 kb on + strand, within HMPREF1058_RS12860 at 16.623 kb on + strand, within HMPREF1058_RS12860 at 16.624 kb on - strand, within HMPREF1058_RS12860 at 16.624 kb on - strand, within HMPREF1058_RS12860 at 16.624 kb on - strand, within HMPREF1058_RS12860 at 16.625 kb on + strand, within HMPREF1058_RS12860 at 16.626 kb on - strand, within HMPREF1058_RS12860 at 16.648 kb on + strand, within HMPREF1058_RS12860 at 16.802 kb on - strand, within HMPREF1058_RS12860 at 16.863 kb on - strand, within HMPREF1058_RS12860 at 16.863 kb on - strand, within HMPREF1058_RS12860 at 16.999 kb on + strand, within HMPREF1058_RS12860 at 17.000 kb on - strand, within HMPREF1058_RS12860 at 17.004 kb on + strand, within HMPREF1058_RS12860 at 17.050 kb on + strand at 17.085 kb on - strand at 17.089 kb on + strand at 17.090 kb on - strand at 17.154 kb on - strand at 17.235 kb on + strand, within HMPREF1058_RS12855 at 17.304 kb on - strand, within HMPREF1058_RS12855 at 17.329 kb on - strand, within HMPREF1058_RS12855 at 17.369 kb on - strand, within HMPREF1058_RS12855 at 17.381 kb on + strand, within HMPREF1058_RS12855 at 17.382 kb on - strand, within HMPREF1058_RS12855 at 17.382 kb on - strand, within HMPREF1058_RS12855 at 17.411 kb on + strand, within HMPREF1058_RS12855 at 17.412 kb on - strand, within HMPREF1058_RS12855 at 17.449 kb on - strand, within HMPREF1058_RS12855 at 17.468 kb on + strand, within HMPREF1058_RS12855 at 17.472 kb on + strand, within HMPREF1058_RS12855 at 17.472 kb on + strand, within HMPREF1058_RS12855 at 17.473 kb on - strand, within HMPREF1058_RS12855 at 17.473 kb on - strand, within HMPREF1058_RS12855 at 17.473 kb on - strand, within HMPREF1058_RS12855 at 17.473 kb on - strand, within HMPREF1058_RS12855 at 17.493 kb on + strand, within HMPREF1058_RS12855 at 17.529 kb on - strand, within HMPREF1058_RS12855 at 17.529 kb on - strand, within HMPREF1058_RS12855 at 17.592 kb on - strand, within HMPREF1058_RS12855 at 17.592 kb on - strand, within HMPREF1058_RS12855 at 17.593 kb on + strand, within HMPREF1058_RS12855 at 17.618 kb on + strand, within HMPREF1058_RS12855 at 17.795 kb on + strand at 17.902 kb on - strand, within HMPREF1058_RS12850 at 17.904 kb on + strand, within HMPREF1058_RS12850 at 17.904 kb on + strand, within HMPREF1058_RS12850 at 17.905 kb on - strand, within HMPREF1058_RS12850 at 17.907 kb on - strand, within HMPREF1058_RS12850 at 17.908 kb on + strand, within HMPREF1058_RS12850 at 17.948 kb on - strand, within HMPREF1058_RS12850 at 18.054 kb on + strand at 18.055 kb on - strand, within HMPREF1058_RS12850 at 18.055 kb on - strand, within HMPREF1058_RS12850 at 18.055 kb on - strand, within HMPREF1058_RS12850 at 18.056 kb on + strand, within HMPREF1058_RS12850 at 18.056 kb on + strand, within HMPREF1058_RS12850 at 18.056 kb on + strand, within HMPREF1058_RS12850 at 18.057 kb on - strand, within HMPREF1058_RS12850 at 18.057 kb on - strand, within HMPREF1058_RS12850 at 18.057 kb on - strand, within HMPREF1058_RS12850 at 18.060 kb on + strand, within HMPREF1058_RS12850 at 18.061 kb on - strand, within HMPREF1058_RS12850 at 18.061 kb on - strand, within HMPREF1058_RS12850 at 18.121 kb on + strand, within HMPREF1058_RS12850 at 18.121 kb on + strand, within HMPREF1058_RS12850 at 18.160 kb on + strand, within HMPREF1058_RS12850 at 18.165 kb on + strand, within HMPREF1058_RS12850 at 18.166 kb on - strand, within HMPREF1058_RS12850 at 18.203 kb on + strand, within HMPREF1058_RS12850 at 18.235 kb on + strand, within HMPREF1058_RS12850 at 18.238 kb on - strand, within HMPREF1058_RS12850 at 18.260 kb on - strand, within HMPREF1058_RS12850 at 18.260 kb on - strand, within HMPREF1058_RS12850 at 18.339 kb on + strand, within HMPREF1058_RS12850 at 18.397 kb on - strand, within HMPREF1058_RS12850 at 18.437 kb on + strand, within HMPREF1058_RS12850 at 18.439 kb on + strand, within HMPREF1058_RS12850 at 18.439 kb on + strand, within HMPREF1058_RS12850 at 18.440 kb on - strand, within HMPREF1058_RS12850 at 18.451 kb on + strand, within HMPREF1058_RS12850 at 18.452 kb on - strand, within HMPREF1058_RS12850 at 18.463 kb on + strand, within HMPREF1058_RS12850 at 18.463 kb on + strand, within HMPREF1058_RS12850 at 18.464 kb on - strand, within HMPREF1058_RS12850 at 18.473 kb on + strand, within HMPREF1058_RS12850 at 18.473 kb on + strand, within HMPREF1058_RS12850 at 18.493 kb on - strand, within HMPREF1058_RS12850 at 18.513 kb on + strand, within HMPREF1058_RS12850 at 18.516 kb on + strand, within HMPREF1058_RS12850 at 18.516 kb on + strand, within HMPREF1058_RS12850 at 18.517 kb on - strand, within HMPREF1058_RS12850 at 18.571 kb on + strand at 18.602 kb on - strand at 18.602 kb on - strand at 18.602 kb on - strand at 18.645 kb on - strand at 18.651 kb on + strand at 18.651 kb on + strand at 18.652 kb on - strand at 18.653 kb on + strand at 18.653 kb on + strand at 18.653 kb on + strand at 18.653 kb on + strand at 18.654 kb on - strand at 18.657 kb on + strand at 18.679 kb on - strand at 18.687 kb on - strand at 18.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 16,187 + HMPREF1058_RS0119575 0.88 +0.4 16,188 - HMPREF1058_RS0119575 0.89 +0.1 16,234 + -0.2 16,262 + -0.5 16,263 - +1.5 16,412 + -0.5 16,413 - -1.5 16,418 - -0.4 16,451 + -2.8 16,452 - +0.2 16,452 - +0.4 16,619 + HMPREF1058_RS12860 0.25 -0.4 16,619 + HMPREF1058_RS12860 0.25 +1.0 16,619 + HMPREF1058_RS12860 0.25 +0.2 16,620 - HMPREF1058_RS12860 0.26 -0.6 16,621 + HMPREF1058_RS12860 0.26 -0.3 16,621 + HMPREF1058_RS12860 0.26 +0.7 16,621 + HMPREF1058_RS12860 0.26 -0.2 16,622 - HMPREF1058_RS12860 0.26 +1.5 16,623 + HMPREF1058_RS12860 0.26 -0.8 16,623 + HMPREF1058_RS12860 0.26 -0.4 16,623 + HMPREF1058_RS12860 0.26 -0.8 16,624 - HMPREF1058_RS12860 0.26 -0.6 16,624 - HMPREF1058_RS12860 0.26 -0.3 16,624 - HMPREF1058_RS12860 0.26 -0.8 16,625 + HMPREF1058_RS12860 0.26 -1.0 16,626 - HMPREF1058_RS12860 0.26 +1.3 16,648 + HMPREF1058_RS12860 0.30 +1.4 16,802 - HMPREF1058_RS12860 0.54 +0.4 16,863 - HMPREF1058_RS12860 0.64 -0.5 16,863 - HMPREF1058_RS12860 0.64 -0.1 16,999 + HMPREF1058_RS12860 0.85 +0.2 17,000 - HMPREF1058_RS12860 0.85 -0.5 17,004 + HMPREF1058_RS12860 0.86 -0.0 17,050 + -0.1 17,085 - -0.9 17,089 + -0.5 17,090 - -2.1 17,154 - -1.4 17,235 + HMPREF1058_RS12855 0.23 -0.5 17,304 - HMPREF1058_RS12855 0.34 -0.3 17,329 - HMPREF1058_RS12855 0.38 +0.1 17,369 - HMPREF1058_RS12855 0.45 +0.2 17,381 + HMPREF1058_RS12855 0.47 -0.5 17,382 - HMPREF1058_RS12855 0.47 -0.3 17,382 - HMPREF1058_RS12855 0.47 +1.1 17,411 + HMPREF1058_RS12855 0.52 +0.2 17,412 - HMPREF1058_RS12855 0.52 -0.0 17,449 - HMPREF1058_RS12855 0.58 +0.6 17,468 + HMPREF1058_RS12855 0.62 +0.2 17,472 + HMPREF1058_RS12855 0.62 +0.5 17,472 + HMPREF1058_RS12855 0.62 -0.1 17,473 - HMPREF1058_RS12855 0.62 +0.1 17,473 - HMPREF1058_RS12855 0.62 +0.0 17,473 - HMPREF1058_RS12855 0.62 +0.1 17,473 - HMPREF1058_RS12855 0.62 -0.9 17,493 + HMPREF1058_RS12855 0.66 -0.6 17,529 - HMPREF1058_RS12855 0.72 +0.9 17,529 - HMPREF1058_RS12855 0.72 +0.6 17,592 - HMPREF1058_RS12855 0.82 +0.5 17,592 - HMPREF1058_RS12855 0.82 +0.8 17,593 + HMPREF1058_RS12855 0.83 -1.0 17,618 + HMPREF1058_RS12855 0.87 -0.4 17,795 + +1.6 17,902 - HMPREF1058_RS12850 0.11 +1.2 17,904 + HMPREF1058_RS12850 0.12 -1.7 17,904 + HMPREF1058_RS12850 0.12 -0.8 17,905 - HMPREF1058_RS12850 0.12 +0.8 17,907 - HMPREF1058_RS12850 0.12 +0.5 17,908 + HMPREF1058_RS12850 0.12 -0.4 17,948 - HMPREF1058_RS12850 0.17 -1.4 18,054 + -1.8 18,055 - HMPREF1058_RS12850 0.30 -1.5 18,055 - HMPREF1058_RS12850 0.30 -0.1 18,055 - HMPREF1058_RS12850 0.30 -0.6 18,056 + HMPREF1058_RS12850 0.30 -2.2 18,056 + HMPREF1058_RS12850 0.30 +0.5 18,056 + HMPREF1058_RS12850 0.30 +0.8 18,057 - HMPREF1058_RS12850 0.30 -1.9 18,057 - HMPREF1058_RS12850 0.30 -0.8 18,057 - HMPREF1058_RS12850 0.30 +0.5 18,060 + HMPREF1058_RS12850 0.30 +0.4 18,061 - HMPREF1058_RS12850 0.30 +0.0 18,061 - HMPREF1058_RS12850 0.30 -0.1 18,121 + HMPREF1058_RS12850 0.37 -0.7 18,121 + HMPREF1058_RS12850 0.37 +1.0 18,160 + HMPREF1058_RS12850 0.42 +0.1 18,165 + HMPREF1058_RS12850 0.43 -0.0 18,166 - HMPREF1058_RS12850 0.43 -0.1 18,203 + HMPREF1058_RS12850 0.47 +0.9 18,235 + HMPREF1058_RS12850 0.51 -0.4 18,238 - HMPREF1058_RS12850 0.51 -0.3 18,260 - HMPREF1058_RS12850 0.54 +0.2 18,260 - HMPREF1058_RS12850 0.54 +0.1 18,339 + HMPREF1058_RS12850 0.63 +0.1 18,397 - HMPREF1058_RS12850 0.70 +0.0 18,437 + HMPREF1058_RS12850 0.75 +1.0 18,439 + HMPREF1058_RS12850 0.75 -0.8 18,439 + HMPREF1058_RS12850 0.75 +0.5 18,440 - HMPREF1058_RS12850 0.75 +0.6 18,451 + HMPREF1058_RS12850 0.77 -0.4 18,452 - HMPREF1058_RS12850 0.77 -1.2 18,463 + HMPREF1058_RS12850 0.78 +2.1 18,463 + HMPREF1058_RS12850 0.78 -0.8 18,464 - HMPREF1058_RS12850 0.78 -0.5 18,473 + HMPREF1058_RS12850 0.79 +0.8 18,473 + HMPREF1058_RS12850 0.79 -0.0 18,493 - HMPREF1058_RS12850 0.82 -0.4 18,513 + HMPREF1058_RS12850 0.84 +0.5 18,516 + HMPREF1058_RS12850 0.84 +0.3 18,516 + HMPREF1058_RS12850 0.84 +0.1 18,517 - HMPREF1058_RS12850 0.85 -0.4 18,571 + -1.1 18,602 - -0.8 18,602 - -0.6 18,602 - +0.3 18,645 - +0.5 18,651 + -0.1 18,651 + -0.9 18,652 - +0.1 18,653 + -0.2 18,653 + +0.7 18,653 + -0.7 18,653 + -1.9 18,654 - +1.5 18,657 + -0.2 18,679 - -0.2 18,687 - -0.7 18,687 - -0.4
Or see this region's nucleotide sequence