Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12295 and HMPREF1058_RS12290 are separated by 67 nucleotides HMPREF1058_RS12290 and HMPREF1058_RS12285 are separated by 102 nucleotides
HMPREF1058_RS12295: HMPREF1058_RS12295 - OprO/OprP family phosphate-selective porin, at 150,282 to 151,469
_RS12295
HMPREF1058_RS12290: HMPREF1058_RS12290 - DUF3109 family protein, at 151,537 to 152,118
_RS12290
HMPREF1058_RS12285: HMPREF1058_RS12285 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 152,221 to 153,735
_RS12285
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1 at 150.679 kb on + strand, within HMPREF1058_RS12295 at 150.680 kb on - strand, within HMPREF1058_RS12295 at 150.680 kb on - strand, within HMPREF1058_RS12295 at 150.694 kb on + strand, within HMPREF1058_RS12295 at 150.694 kb on + strand, within HMPREF1058_RS12295 at 150.702 kb on - strand, within HMPREF1058_RS12295 at 150.722 kb on + strand, within HMPREF1058_RS12295 at 150.723 kb on - strand, within HMPREF1058_RS12295 at 150.723 kb on - strand, within HMPREF1058_RS12295 at 150.790 kb on - strand, within HMPREF1058_RS12295 at 150.995 kb on + strand, within HMPREF1058_RS12295 at 151.010 kb on + strand, within HMPREF1058_RS12295 at 151.011 kb on - strand, within HMPREF1058_RS12295 at 151.145 kb on + strand, within HMPREF1058_RS12295 at 151.222 kb on - strand, within HMPREF1058_RS12295 at 151.224 kb on + strand, within HMPREF1058_RS12295 at 151.225 kb on - strand, within HMPREF1058_RS12295 at 151.251 kb on - strand, within HMPREF1058_RS12295 at 151.376 kb on + strand at 151.376 kb on + strand at 151.437 kb on + strand at 151.438 kb on - strand at 151.442 kb on + strand at 151.459 kb on - strand at 151.508 kb on - strand at 151.519 kb on - strand at 151.521 kb on + strand at 151.522 kb on - strand at 151.587 kb on + strand at 151.637 kb on + strand at 151.637 kb on + strand, within HMPREF1058_RS12290 at 151.638 kb on - strand, within HMPREF1058_RS12290 at 151.638 kb on - strand, within HMPREF1058_RS12290 at 151.640 kb on - strand, within HMPREF1058_RS12290 at 151.640 kb on - strand, within HMPREF1058_RS12290 at 151.666 kb on + strand, within HMPREF1058_RS12290 at 151.681 kb on - strand, within HMPREF1058_RS12290 at 151.700 kb on + strand, within HMPREF1058_RS12290 at 151.715 kb on + strand, within HMPREF1058_RS12290 at 151.733 kb on - strand, within HMPREF1058_RS12290 at 151.769 kb on + strand, within HMPREF1058_RS12290 at 151.769 kb on + strand, within HMPREF1058_RS12290 at 151.783 kb on - strand, within HMPREF1058_RS12290 at 151.815 kb on - strand, within HMPREF1058_RS12290 at 151.835 kb on + strand, within HMPREF1058_RS12290 at 151.835 kb on + strand, within HMPREF1058_RS12290 at 151.846 kb on + strand, within HMPREF1058_RS12290 at 151.847 kb on - strand, within HMPREF1058_RS12290 at 151.847 kb on - strand, within HMPREF1058_RS12290 at 151.847 kb on - strand, within HMPREF1058_RS12290 at 152.095 kb on + strand at 152.107 kb on + strand at 152.108 kb on - strand at 152.114 kb on - strand at 152.124 kb on - strand at 152.126 kb on + strand at 152.223 kb on - strand at 152.562 kb on - strand, within HMPREF1058_RS12285
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 150,679 + HMPREF1058_RS12295 0.33 +0.3 150,680 - HMPREF1058_RS12295 0.34 -0.7 150,680 - HMPREF1058_RS12295 0.34 +0.4 150,694 + HMPREF1058_RS12295 0.35 -0.5 150,694 + HMPREF1058_RS12295 0.35 -1.3 150,702 - HMPREF1058_RS12295 0.35 +0.3 150,722 + HMPREF1058_RS12295 0.37 -2.0 150,723 - HMPREF1058_RS12295 0.37 -2.0 150,723 - HMPREF1058_RS12295 0.37 +0.2 150,790 - HMPREF1058_RS12295 0.43 -2.1 150,995 + HMPREF1058_RS12295 0.60 -1.0 151,010 + HMPREF1058_RS12295 0.61 +0.1 151,011 - HMPREF1058_RS12295 0.61 -1.6 151,145 + HMPREF1058_RS12295 0.73 -0.5 151,222 - HMPREF1058_RS12295 0.79 -0.2 151,224 + HMPREF1058_RS12295 0.79 -1.4 151,225 - HMPREF1058_RS12295 0.79 +0.5 151,251 - HMPREF1058_RS12295 0.82 -0.8 151,376 + +0.1 151,376 + -0.3 151,437 + -1.7 151,438 - -0.4 151,442 + -1.3 151,459 - -0.4 151,508 - +0.1 151,519 - +0.1 151,521 + +0.0 151,522 - -0.1 151,587 + +0.4 151,637 + +0.5 151,637 + HMPREF1058_RS12290 0.17 -0.2 151,638 - HMPREF1058_RS12290 0.17 +0.6 151,638 - HMPREF1058_RS12290 0.17 +0.3 151,640 - HMPREF1058_RS12290 0.18 +1.1 151,640 - HMPREF1058_RS12290 0.18 +0.9 151,666 + HMPREF1058_RS12290 0.22 -0.3 151,681 - HMPREF1058_RS12290 0.25 +1.0 151,700 + HMPREF1058_RS12290 0.28 -0.5 151,715 + HMPREF1058_RS12290 0.31 +0.3 151,733 - HMPREF1058_RS12290 0.34 +0.7 151,769 + HMPREF1058_RS12290 0.40 +0.8 151,769 + HMPREF1058_RS12290 0.40 +1.2 151,783 - HMPREF1058_RS12290 0.42 +0.6 151,815 - HMPREF1058_RS12290 0.48 +1.0 151,835 + HMPREF1058_RS12290 0.51 -0.3 151,835 + HMPREF1058_RS12290 0.51 -1.3 151,846 + HMPREF1058_RS12290 0.53 +0.1 151,847 - HMPREF1058_RS12290 0.53 +0.0 151,847 - HMPREF1058_RS12290 0.53 +0.7 151,847 - HMPREF1058_RS12290 0.53 +0.1 152,095 + +0.3 152,107 + -0.6 152,108 - -0.5 152,114 - -0.2 152,124 - -0.7 152,126 + +0.3 152,223 - +0.1 152,562 - HMPREF1058_RS12285 0.23 +0.5
Or see this region's nucleotide sequence