Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12245 and HMPREF1058_RS12240 overlap by 4 nucleotides HMPREF1058_RS12240 and HMPREF1058_RS12235 are separated by 13 nucleotides HMPREF1058_RS12235 and HMPREF1058_RS12230 are separated by 17 nucleotides
HMPREF1058_RS12245: HMPREF1058_RS12245 - LysO family transporter, at 165,866 to 166,147
_RS12245
HMPREF1058_RS12240: HMPREF1058_RS12240 - lysine exporter LysO family protein, at 166,144 to 166,746
_RS12240
HMPREF1058_RS12235: HMPREF1058_RS12235 - DUF4981 domain-containing protein, at 166,760 to 169,936
_RS12235
HMPREF1058_RS12230: HMPREF1058_RS12230 - glycoside hydrolase, at 169,954 to 171,888
_RS12230
Position (kb) 166
167
168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2 at 165.773 kb on + strand at 165.774 kb on - strand at 165.776 kb on - strand at 165.776 kb on - strand at 165.779 kb on + strand at 165.780 kb on - strand at 165.819 kb on + strand at 165.835 kb on + strand at 165.847 kb on + strand at 165.852 kb on - strand at 165.861 kb on + strand at 165.862 kb on - strand at 165.864 kb on - strand at 165.865 kb on + strand at 165.866 kb on - strand at 165.866 kb on - strand at 165.976 kb on - strand, within HMPREF1058_RS12245 at 165.993 kb on + strand, within HMPREF1058_RS12245 at 165.994 kb on - strand, within HMPREF1058_RS12245 at 165.994 kb on - strand, within HMPREF1058_RS12245 at 166.036 kb on + strand, within HMPREF1058_RS12245 at 166.110 kb on - strand, within HMPREF1058_RS12245 at 166.110 kb on - strand, within HMPREF1058_RS12245 at 166.114 kb on - strand, within HMPREF1058_RS12245 at 166.114 kb on - strand, within HMPREF1058_RS12245 at 166.143 kb on + strand at 166.143 kb on + strand at 166.144 kb on - strand at 166.246 kb on + strand, within HMPREF1058_RS12240 at 166.429 kb on - strand, within HMPREF1058_RS12240 at 166.486 kb on + strand, within HMPREF1058_RS12240 at 166.486 kb on + strand, within HMPREF1058_RS12240 at 166.488 kb on + strand, within HMPREF1058_RS12240 at 166.712 kb on + strand at 166.741 kb on - strand at 166.741 kb on - strand at 166.777 kb on + strand at 166.787 kb on - strand at 166.893 kb on - strand at 167.045 kb on - strand at 167.080 kb on + strand, within HMPREF1058_RS12235 at 167.080 kb on - strand, within HMPREF1058_RS12235 at 167.126 kb on + strand, within HMPREF1058_RS12235 at 167.127 kb on - strand, within HMPREF1058_RS12235 at 167.137 kb on - strand, within HMPREF1058_RS12235 at 167.137 kb on - strand, within HMPREF1058_RS12235 at 167.198 kb on + strand, within HMPREF1058_RS12235 at 167.198 kb on + strand, within HMPREF1058_RS12235 at 167.199 kb on - strand, within HMPREF1058_RS12235 at 167.199 kb on - strand, within HMPREF1058_RS12235 at 167.199 kb on - strand, within HMPREF1058_RS12235 at 167.348 kb on - strand, within HMPREF1058_RS12235 at 167.414 kb on + strand, within HMPREF1058_RS12235 at 167.463 kb on + strand, within HMPREF1058_RS12235 at 167.463 kb on + strand, within HMPREF1058_RS12235 at 167.464 kb on - strand, within HMPREF1058_RS12235 at 167.464 kb on - strand, within HMPREF1058_RS12235 at 167.622 kb on + strand, within HMPREF1058_RS12235 at 167.647 kb on - strand, within HMPREF1058_RS12235 at 167.922 kb on + strand, within HMPREF1058_RS12235 at 167.999 kb on + strand, within HMPREF1058_RS12235 at 168.027 kb on - strand, within HMPREF1058_RS12235 at 168.073 kb on + strand, within HMPREF1058_RS12235 at 168.222 kb on + strand, within HMPREF1058_RS12235 at 168.266 kb on + strand, within HMPREF1058_RS12235 at 168.302 kb on + strand, within HMPREF1058_RS12235 at 168.302 kb on + strand, within HMPREF1058_RS12235 at 168.315 kb on - strand, within HMPREF1058_RS12235 at 168.315 kb on - strand, within HMPREF1058_RS12235 at 168.408 kb on + strand, within HMPREF1058_RS12235 at 168.409 kb on - strand, within HMPREF1058_RS12235 at 168.446 kb on + strand, within HMPREF1058_RS12235 at 168.447 kb on - strand, within HMPREF1058_RS12235 at 168.472 kb on - strand, within HMPREF1058_RS12235 at 168.645 kb on + strand, within HMPREF1058_RS12235 at 168.645 kb on + strand, within HMPREF1058_RS12235 at 168.655 kb on + strand, within HMPREF1058_RS12235 at 168.734 kb on + strand, within HMPREF1058_RS12235 at 168.861 kb on + strand, within HMPREF1058_RS12235 at 168.869 kb on + strand, within HMPREF1058_RS12235 at 168.912 kb on + strand, within HMPREF1058_RS12235 at 168.934 kb on - strand, within HMPREF1058_RS12235 at 169.005 kb on + strand, within HMPREF1058_RS12235 at 169.048 kb on + strand, within HMPREF1058_RS12235 at 169.085 kb on - strand, within HMPREF1058_RS12235 at 169.113 kb on + strand, within HMPREF1058_RS12235 at 169.113 kb on + strand, within HMPREF1058_RS12235 at 169.115 kb on + strand, within HMPREF1058_RS12235 at 169.116 kb on - strand, within HMPREF1058_RS12235 at 169.116 kb on - strand, within HMPREF1058_RS12235 at 169.299 kb on + strand, within HMPREF1058_RS12235 at 169.300 kb on - strand, within HMPREF1058_RS12235 at 169.375 kb on - strand, within HMPREF1058_RS12235 at 169.378 kb on + strand, within HMPREF1058_RS12235 at 169.378 kb on + strand, within HMPREF1058_RS12235 at 169.378 kb on + strand, within HMPREF1058_RS12235 at 169.378 kb on + strand, within HMPREF1058_RS12235 at 169.430 kb on - strand, within HMPREF1058_RS12235 at 169.436 kb on - strand, within HMPREF1058_RS12235 at 169.436 kb on - strand, within HMPREF1058_RS12235 at 169.436 kb on - strand, within HMPREF1058_RS12235 at 169.455 kb on - strand, within HMPREF1058_RS12235 at 169.533 kb on - strand, within HMPREF1058_RS12235 at 169.564 kb on + strand, within HMPREF1058_RS12235 at 169.565 kb on + strand, within HMPREF1058_RS12235 at 169.603 kb on - strand, within HMPREF1058_RS12235 at 169.707 kb on - strand at 169.807 kb on + strand at 169.808 kb on - strand at 169.810 kb on + strand at 169.827 kb on + strand at 169.827 kb on + strand at 169.935 kb on - strand at 169.995 kb on - strand at 170.081 kb on + strand at 170.081 kb on + strand at 170.081 kb on + strand at 170.081 kb on + strand at 170.082 kb on - strand at 170.082 kb on - strand at 170.086 kb on + strand at 170.086 kb on + strand at 170.087 kb on - strand at 170.087 kb on - strand at 170.250 kb on - strand, within HMPREF1058_RS12230 at 170.255 kb on - strand, within HMPREF1058_RS12230 at 170.276 kb on + strand, within HMPREF1058_RS12230 at 170.316 kb on - strand, within HMPREF1058_RS12230 at 170.318 kb on - strand, within HMPREF1058_RS12230 at 170.454 kb on - strand, within HMPREF1058_RS12230 at 170.454 kb on - strand, within HMPREF1058_RS12230 at 170.517 kb on - strand, within HMPREF1058_RS12230 at 170.615 kb on - strand, within HMPREF1058_RS12230 at 170.717 kb on - strand, within HMPREF1058_RS12230 at 170.790 kb on + strand, within HMPREF1058_RS12230 at 170.791 kb on - strand, within HMPREF1058_RS12230 at 170.860 kb on + strand, within HMPREF1058_RS12230 at 170.861 kb on - strand, within HMPREF1058_RS12230 at 170.861 kb on - strand, within HMPREF1058_RS12230 at 170.861 kb on - strand, within HMPREF1058_RS12230 at 170.868 kb on - strand, within HMPREF1058_RS12230
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 165,773 + +0.4 165,774 - +0.1 165,776 - -0.3 165,776 - -0.7 165,779 + +1.2 165,780 - -0.6 165,819 + -0.5 165,835 + +0.2 165,847 + -0.9 165,852 - -0.5 165,861 + +0.0 165,862 - -0.4 165,864 - -0.3 165,865 + -0.7 165,866 - +1.1 165,866 - +0.9 165,976 - HMPREF1058_RS12245 0.39 -0.1 165,993 + HMPREF1058_RS12245 0.45 -1.2 165,994 - HMPREF1058_RS12245 0.45 -0.0 165,994 - HMPREF1058_RS12245 0.45 +0.2 166,036 + HMPREF1058_RS12245 0.60 -1.7 166,110 - HMPREF1058_RS12245 0.87 +0.2 166,110 - HMPREF1058_RS12245 0.87 -0.7 166,114 - HMPREF1058_RS12245 0.88 -0.4 166,114 - HMPREF1058_RS12245 0.88 -0.1 166,143 + -0.5 166,143 + +0.3 166,144 - +0.4 166,246 + HMPREF1058_RS12240 0.17 +0.5 166,429 - HMPREF1058_RS12240 0.47 -0.4 166,486 + HMPREF1058_RS12240 0.57 +0.3 166,486 + HMPREF1058_RS12240 0.57 -0.2 166,488 + HMPREF1058_RS12240 0.57 -1.1 166,712 + +1.1 166,741 - -0.1 166,741 - -0.5 166,777 + -0.8 166,787 - +0.2 166,893 - -1.4 167,045 - -0.5 167,080 + HMPREF1058_RS12235 0.10 +0.6 167,080 - HMPREF1058_RS12235 0.10 -1.1 167,126 + HMPREF1058_RS12235 0.12 +0.1 167,127 - HMPREF1058_RS12235 0.12 +0.4 167,137 - HMPREF1058_RS12235 0.12 +0.6 167,137 - HMPREF1058_RS12235 0.12 +0.8 167,198 + HMPREF1058_RS12235 0.14 +0.9 167,198 + HMPREF1058_RS12235 0.14 -0.9 167,199 - HMPREF1058_RS12235 0.14 -0.6 167,199 - HMPREF1058_RS12235 0.14 -0.3 167,199 - HMPREF1058_RS12235 0.14 -0.7 167,348 - HMPREF1058_RS12235 0.19 -0.9 167,414 + HMPREF1058_RS12235 0.21 -1.6 167,463 + HMPREF1058_RS12235 0.22 +1.5 167,463 + HMPREF1058_RS12235 0.22 -0.3 167,464 - HMPREF1058_RS12235 0.22 -0.2 167,464 - HMPREF1058_RS12235 0.22 -0.7 167,622 + HMPREF1058_RS12235 0.27 +1.1 167,647 - HMPREF1058_RS12235 0.28 -0.6 167,922 + HMPREF1058_RS12235 0.37 +0.5 167,999 + HMPREF1058_RS12235 0.39 -0.1 168,027 - HMPREF1058_RS12235 0.40 -0.4 168,073 + HMPREF1058_RS12235 0.41 +0.2 168,222 + HMPREF1058_RS12235 0.46 +0.3 168,266 + HMPREF1058_RS12235 0.47 -0.8 168,302 + HMPREF1058_RS12235 0.49 +0.1 168,302 + HMPREF1058_RS12235 0.49 -1.1 168,315 - HMPREF1058_RS12235 0.49 +0.4 168,315 - HMPREF1058_RS12235 0.49 -0.9 168,408 + HMPREF1058_RS12235 0.52 +0.8 168,409 - HMPREF1058_RS12235 0.52 -1.0 168,446 + HMPREF1058_RS12235 0.53 -0.8 168,447 - HMPREF1058_RS12235 0.53 +2.5 168,472 - HMPREF1058_RS12235 0.54 -0.6 168,645 + HMPREF1058_RS12235 0.59 +0.1 168,645 + HMPREF1058_RS12235 0.59 +0.4 168,655 + HMPREF1058_RS12235 0.60 -0.5 168,734 + HMPREF1058_RS12235 0.62 -0.6 168,861 + HMPREF1058_RS12235 0.66 -0.6 168,869 + HMPREF1058_RS12235 0.66 -0.8 168,912 + HMPREF1058_RS12235 0.68 -0.5 168,934 - HMPREF1058_RS12235 0.68 -1.4 169,005 + HMPREF1058_RS12235 0.71 +0.7 169,048 + HMPREF1058_RS12235 0.72 -0.2 169,085 - HMPREF1058_RS12235 0.73 -0.2 169,113 + HMPREF1058_RS12235 0.74 -1.1 169,113 + HMPREF1058_RS12235 0.74 -1.3 169,115 + HMPREF1058_RS12235 0.74 -0.6 169,116 - HMPREF1058_RS12235 0.74 +0.4 169,116 - HMPREF1058_RS12235 0.74 -0.2 169,299 + HMPREF1058_RS12235 0.80 -0.3 169,300 - HMPREF1058_RS12235 0.80 -2.4 169,375 - HMPREF1058_RS12235 0.82 +0.0 169,378 + HMPREF1058_RS12235 0.82 +0.3 169,378 + HMPREF1058_RS12235 0.82 -1.4 169,378 + HMPREF1058_RS12235 0.82 -0.1 169,378 + HMPREF1058_RS12235 0.82 -2.6 169,430 - HMPREF1058_RS12235 0.84 +0.2 169,436 - HMPREF1058_RS12235 0.84 +0.7 169,436 - HMPREF1058_RS12235 0.84 -0.0 169,436 - HMPREF1058_RS12235 0.84 -0.2 169,455 - HMPREF1058_RS12235 0.85 -0.3 169,533 - HMPREF1058_RS12235 0.87 +0.4 169,564 + HMPREF1058_RS12235 0.88 -0.8 169,565 + HMPREF1058_RS12235 0.88 -0.1 169,603 - HMPREF1058_RS12235 0.89 -0.4 169,707 - -0.4 169,807 + -0.5 169,808 - -0.7 169,810 + -0.0 169,827 + +0.1 169,827 + -0.2 169,935 - -1.5 169,995 - +0.5 170,081 + -0.5 170,081 + -0.2 170,081 + -0.8 170,081 + +0.3 170,082 - -2.7 170,082 - +0.4 170,086 + +0.9 170,086 + +0.8 170,087 - -0.8 170,087 - -0.5 170,250 - HMPREF1058_RS12230 0.15 +0.4 170,255 - HMPREF1058_RS12230 0.16 +0.1 170,276 + HMPREF1058_RS12230 0.17 +0.0 170,316 - HMPREF1058_RS12230 0.19 -0.2 170,318 - HMPREF1058_RS12230 0.19 +1.4 170,454 - HMPREF1058_RS12230 0.26 -0.5 170,454 - HMPREF1058_RS12230 0.26 -1.1 170,517 - HMPREF1058_RS12230 0.29 -0.8 170,615 - HMPREF1058_RS12230 0.34 -0.6 170,717 - HMPREF1058_RS12230 0.39 -2.0 170,790 + HMPREF1058_RS12230 0.43 +1.0 170,791 - HMPREF1058_RS12230 0.43 +0.2 170,860 + HMPREF1058_RS12230 0.47 +0.6 170,861 - HMPREF1058_RS12230 0.47 -0.3 170,861 - HMPREF1058_RS12230 0.47 -1.1 170,861 - HMPREF1058_RS12230 0.47 -0.4 170,868 - HMPREF1058_RS12230 0.47 -0.7
Or see this region's nucleotide sequence