Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS11825

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS11830 and HMPREF1058_RS11825 are separated by 48 nucleotidesHMPREF1058_RS11825 and HMPREF1058_RS11820 are separated by 592 nucleotides HMPREF1058_RS11830: HMPREF1058_RS11830 - hypothetical protein, at 272,654 to 275,269 _RS11830 HMPREF1058_RS11825: HMPREF1058_RS11825 - helix-turn-helix transcriptional regulator, at 275,318 to 275,809 _RS11825 HMPREF1058_RS11820: HMPREF1058_RS11820 - 4Fe-4S binding protein, at 276,402 to 277,181 _RS11820 Position (kb) 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 274.335 kb on + strand, within HMPREF1058_RS11830at 274.336 kb on - strand, within HMPREF1058_RS11830at 274.369 kb on + strand, within HMPREF1058_RS11830at 274.369 kb on + strand, within HMPREF1058_RS11830at 274.372 kb on - strand, within HMPREF1058_RS11830at 274.490 kb on - strand, within HMPREF1058_RS11830at 274.501 kb on + strand, within HMPREF1058_RS11830at 274.519 kb on + strand, within HMPREF1058_RS11830at 274.593 kb on + strand, within HMPREF1058_RS11830at 274.594 kb on - strand, within HMPREF1058_RS11830at 274.598 kb on + strand, within HMPREF1058_RS11830at 274.598 kb on + strand, within HMPREF1058_RS11830at 274.599 kb on - strand, within HMPREF1058_RS11830at 274.609 kb on + strand, within HMPREF1058_RS11830at 274.610 kb on - strand, within HMPREF1058_RS11830at 274.679 kb on + strand, within HMPREF1058_RS11830at 274.693 kb on + strand, within HMPREF1058_RS11830at 274.694 kb on - strand, within HMPREF1058_RS11830at 274.746 kb on - strand, within HMPREF1058_RS11830at 274.782 kb on + strand, within HMPREF1058_RS11830at 274.783 kb on - strand, within HMPREF1058_RS11830at 274.783 kb on - strand, within HMPREF1058_RS11830at 274.783 kb on - strand, within HMPREF1058_RS11830at 274.783 kb on - strand, within HMPREF1058_RS11830at 274.836 kb on + strand, within HMPREF1058_RS11830at 274.963 kb on + strand, within HMPREF1058_RS11830at 275.034 kb on + strandat 275.035 kb on - strandat 275.035 kb on - strandat 275.075 kb on + strandat 275.075 kb on + strandat 275.111 kb on + strandat 275.168 kb on - strandat 275.188 kb on - strandat 275.188 kb on - strandat 275.589 kb on - strand, within HMPREF1058_RS11825at 275.646 kb on - strand, within HMPREF1058_RS11825at 275.666 kb on - strand, within HMPREF1058_RS11825at 275.668 kb on - strand, within HMPREF1058_RS11825at 275.767 kb on + strandat 275.768 kb on - strandat 275.798 kb on + strandat 275.809 kb on + strandat 275.809 kb on + strandat 275.814 kb on + strandat 275.831 kb on - strandat 275.902 kb on - strandat 276.008 kb on - strandat 276.020 kb on - strandat 276.047 kb on + strandat 276.055 kb on + strandat 276.075 kb on - strandat 276.081 kb on + strandat 276.082 kb on - strandat 276.354 kb on - strandat 276.354 kb on - strandat 276.357 kb on + strandat 276.361 kb on + strandat 276.362 kb on - strandat 276.362 kb on - strandat 276.390 kb on - strandat 276.411 kb on + strandat 276.449 kb on + strandat 276.449 kb on + strandat 276.449 kb on + strandat 276.449 kb on + strandat 276.450 kb on - strandat 276.450 kb on - strandat 276.491 kb on + strand, within HMPREF1058_RS11820at 276.511 kb on + strand, within HMPREF1058_RS11820at 276.511 kb on + strand, within HMPREF1058_RS11820at 276.512 kb on - strand, within HMPREF1058_RS11820at 276.512 kb on - strand, within HMPREF1058_RS11820at 276.537 kb on - strand, within HMPREF1058_RS11820at 276.561 kb on - strand, within HMPREF1058_RS11820at 276.585 kb on + strand, within HMPREF1058_RS11820at 276.667 kb on + strand, within HMPREF1058_RS11820at 276.667 kb on + strand, within HMPREF1058_RS11820at 276.668 kb on - strand, within HMPREF1058_RS11820at 276.720 kb on - strand, within HMPREF1058_RS11820at 276.774 kb on + strand, within HMPREF1058_RS11820at 276.788 kb on + strand, within HMPREF1058_RS11820

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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274,335 + HMPREF1058_RS11830 0.64 +0.7
274,336 - HMPREF1058_RS11830 0.64 +1.2
274,369 + HMPREF1058_RS11830 0.66 +0.6
274,369 + HMPREF1058_RS11830 0.66 +1.0
274,372 - HMPREF1058_RS11830 0.66 +0.4
274,490 - HMPREF1058_RS11830 0.70 +1.9
274,501 + HMPREF1058_RS11830 0.71 +2.1
274,519 + HMPREF1058_RS11830 0.71 +0.3
274,593 + HMPREF1058_RS11830 0.74 +0.6
274,594 - HMPREF1058_RS11830 0.74 +0.3
274,598 + HMPREF1058_RS11830 0.74 +0.8
274,598 + HMPREF1058_RS11830 0.74 +0.3
274,599 - HMPREF1058_RS11830 0.74 +1.2
274,609 + HMPREF1058_RS11830 0.75 +0.9
274,610 - HMPREF1058_RS11830 0.75 +0.2
274,679 + HMPREF1058_RS11830 0.77 +0.7
274,693 + HMPREF1058_RS11830 0.78 +0.4
274,694 - HMPREF1058_RS11830 0.78 +1.9
274,746 - HMPREF1058_RS11830 0.80 +1.5
274,782 + HMPREF1058_RS11830 0.81 +0.4
274,783 - HMPREF1058_RS11830 0.81 +1.8
274,783 - HMPREF1058_RS11830 0.81 +2.9
274,783 - HMPREF1058_RS11830 0.81 +0.9
274,783 - HMPREF1058_RS11830 0.81 +0.2
274,836 + HMPREF1058_RS11830 0.83 +1.4
274,963 + HMPREF1058_RS11830 0.88 +0.4
275,034 + +2.2
275,035 - +1.8
275,035 - +0.8
275,075 + +0.7
275,075 + +1.4
275,111 + -1.2
275,168 - +0.3
275,188 - +0.9
275,188 - +1.0
275,589 - HMPREF1058_RS11825 0.55 +1.7
275,646 - HMPREF1058_RS11825 0.67 +2.0
275,666 - HMPREF1058_RS11825 0.71 +1.6
275,668 - HMPREF1058_RS11825 0.71 +2.4
275,767 + +3.6
275,768 - +0.2
275,798 + +2.3
275,809 + +2.2
275,809 + +1.7
275,814 + +3.0
275,831 - +0.6
275,902 - +1.9
276,008 - -1.5
276,020 - +0.3
276,047 + -2.7
276,055 + -0.5
276,075 - -3.4
276,081 + +0.5
276,082 - -1.7
276,354 - -0.9
276,354 - -0.9
276,357 + +0.1
276,361 + +0.9
276,362 - +2.9
276,362 - +0.2
276,390 - -1.1
276,411 + +1.3
276,449 + -2.1
276,449 + +0.1
276,449 + +0.3
276,449 + +0.7
276,450 - -1.2
276,450 - -0.5
276,491 + HMPREF1058_RS11820 0.11 -0.0
276,511 + HMPREF1058_RS11820 0.14 -0.1
276,511 + HMPREF1058_RS11820 0.14 -0.0
276,512 - HMPREF1058_RS11820 0.14 -0.2
276,512 - HMPREF1058_RS11820 0.14 -0.6
276,537 - HMPREF1058_RS11820 0.17 -0.2
276,561 - HMPREF1058_RS11820 0.20 +1.4
276,585 + HMPREF1058_RS11820 0.23 +0.5
276,667 + HMPREF1058_RS11820 0.34 +0.3
276,667 + HMPREF1058_RS11820 0.34 +1.1
276,668 - HMPREF1058_RS11820 0.34 +0.5
276,720 - HMPREF1058_RS11820 0.41 +0.7
276,774 + HMPREF1058_RS11820 0.48 +0.4
276,788 + HMPREF1058_RS11820 0.49 -0.1

Or see this region's nucleotide sequence