Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11800 and HMPREF1058_RS11795 are separated by 110 nucleotides HMPREF1058_RS11795 and HMPREF1058_RS11790 are separated by 17 nucleotides HMPREF1058_RS11790 and HMPREF1058_RS11785 are separated by 104 nucleotides
HMPREF1058_RS11800: HMPREF1058_RS11800 - carbohydrate kinase, at 281,922 to 282,842
_RS11800
HMPREF1058_RS11795: HMPREF1058_RS11795 - SIS domain-containing protein, at 282,953 to 283,555
_RS11795
HMPREF1058_RS11790: HMPREF1058_RS11790 - TIGR00730 family Rossman fold protein, at 283,573 to 284,106
_RS11790
HMPREF1058_RS11785: HMPREF1058_RS11785 - insulinase family protein, at 284,211 to 285,431
_RS11785
Position (kb) 283
284
285 Strain fitness (log2 ratio) -2
-1
0
1
2 at 282.589 kb on - strand, within HMPREF1058_RS11800 at 282.639 kb on + strand, within HMPREF1058_RS11800 at 282.740 kb on + strand, within HMPREF1058_RS11800 at 282.822 kb on + strand at 282.822 kb on + strand at 282.824 kb on + strand at 282.824 kb on + strand at 282.825 kb on - strand at 282.860 kb on - strand at 282.867 kb on + strand at 282.910 kb on - strand at 282.919 kb on - strand at 282.949 kb on + strand at 283.579 kb on - strand at 283.579 kb on - strand at 283.703 kb on - strand, within HMPREF1058_RS11790 at 283.780 kb on - strand, within HMPREF1058_RS11790 at 283.780 kb on - strand, within HMPREF1058_RS11790 at 283.784 kb on - strand, within HMPREF1058_RS11790 at 283.784 kb on - strand, within HMPREF1058_RS11790 at 283.802 kb on - strand, within HMPREF1058_RS11790 at 283.963 kb on - strand, within HMPREF1058_RS11790 at 283.963 kb on - strand, within HMPREF1058_RS11790 at 283.995 kb on - strand, within HMPREF1058_RS11790 at 284.217 kb on + strand at 284.217 kb on + strand at 284.273 kb on + strand at 284.274 kb on - strand at 284.278 kb on + strand at 284.279 kb on - strand at 284.442 kb on + strand, within HMPREF1058_RS11785 at 284.443 kb on - strand, within HMPREF1058_RS11785 at 284.443 kb on - strand, within HMPREF1058_RS11785 at 284.444 kb on + strand, within HMPREF1058_RS11785 at 284.468 kb on - strand, within HMPREF1058_RS11785 at 284.469 kb on + strand, within HMPREF1058_RS11785 at 284.469 kb on + strand, within HMPREF1058_RS11785 at 284.469 kb on + strand, within HMPREF1058_RS11785 at 284.470 kb on - strand, within HMPREF1058_RS11785 at 284.470 kb on - strand, within HMPREF1058_RS11785 at 284.470 kb on - strand, within HMPREF1058_RS11785 at 284.470 kb on - strand, within HMPREF1058_RS11785 at 284.523 kb on - strand, within HMPREF1058_RS11785 at 284.675 kb on + strand, within HMPREF1058_RS11785 at 284.696 kb on - strand, within HMPREF1058_RS11785 at 284.785 kb on + strand, within HMPREF1058_RS11785 at 284.792 kb on + strand, within HMPREF1058_RS11785 at 284.812 kb on + strand, within HMPREF1058_RS11785 at 284.878 kb on - strand, within HMPREF1058_RS11785 at 284.880 kb on - strand, within HMPREF1058_RS11785 at 284.885 kb on + strand, within HMPREF1058_RS11785 at 284.926 kb on + strand, within HMPREF1058_RS11785 at 284.927 kb on - strand, within HMPREF1058_RS11785 at 284.933 kb on - strand, within HMPREF1058_RS11785 at 284.949 kb on - strand, within HMPREF1058_RS11785 at 284.949 kb on - strand, within HMPREF1058_RS11785 at 284.955 kb on + strand, within HMPREF1058_RS11785 at 284.956 kb on - strand, within HMPREF1058_RS11785 at 284.979 kb on + strand, within HMPREF1058_RS11785 at 285.061 kb on - strand, within HMPREF1058_RS11785 at 285.067 kb on + strand, within HMPREF1058_RS11785 at 285.067 kb on + strand, within HMPREF1058_RS11785 at 285.067 kb on + strand, within HMPREF1058_RS11785 at 285.067 kb on + strand, within HMPREF1058_RS11785 at 285.067 kb on + strand, within HMPREF1058_RS11785 at 285.067 kb on + strand, within HMPREF1058_RS11785 at 285.088 kb on - strand, within HMPREF1058_RS11785
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 282,589 - HMPREF1058_RS11800 0.72 +1.3 282,639 + HMPREF1058_RS11800 0.78 -2.1 282,740 + HMPREF1058_RS11800 0.89 -0.9 282,822 + +0.0 282,822 + -0.6 282,824 + -0.3 282,824 + -1.9 282,825 - +0.5 282,860 - +0.8 282,867 + +0.1 282,910 - +1.2 282,919 - +1.5 282,949 + +1.1 283,579 - +1.0 283,579 - +0.4 283,703 - HMPREF1058_RS11790 0.24 +0.8 283,780 - HMPREF1058_RS11790 0.39 +0.8 283,780 - HMPREF1058_RS11790 0.39 +1.5 283,784 - HMPREF1058_RS11790 0.40 +0.6 283,784 - HMPREF1058_RS11790 0.40 +0.8 283,802 - HMPREF1058_RS11790 0.43 +1.0 283,963 - HMPREF1058_RS11790 0.73 +0.5 283,963 - HMPREF1058_RS11790 0.73 +1.0 283,995 - HMPREF1058_RS11790 0.79 +0.5 284,217 + -1.0 284,217 + +0.2 284,273 + -0.5 284,274 - -0.5 284,278 + -0.9 284,279 - +0.7 284,442 + HMPREF1058_RS11785 0.19 +0.1 284,443 - HMPREF1058_RS11785 0.19 +0.2 284,443 - HMPREF1058_RS11785 0.19 +0.6 284,444 + HMPREF1058_RS11785 0.19 -0.6 284,468 - HMPREF1058_RS11785 0.21 -0.1 284,469 + HMPREF1058_RS11785 0.21 +0.9 284,469 + HMPREF1058_RS11785 0.21 -0.2 284,469 + HMPREF1058_RS11785 0.21 +0.3 284,470 - HMPREF1058_RS11785 0.21 -2.5 284,470 - HMPREF1058_RS11785 0.21 -2.0 284,470 - HMPREF1058_RS11785 0.21 +0.5 284,470 - HMPREF1058_RS11785 0.21 +0.4 284,523 - HMPREF1058_RS11785 0.26 +0.3 284,675 + HMPREF1058_RS11785 0.38 +0.2 284,696 - HMPREF1058_RS11785 0.40 -1.2 284,785 + HMPREF1058_RS11785 0.47 +0.6 284,792 + HMPREF1058_RS11785 0.48 -0.1 284,812 + HMPREF1058_RS11785 0.49 -0.6 284,878 - HMPREF1058_RS11785 0.55 +0.5 284,880 - HMPREF1058_RS11785 0.55 -0.3 284,885 + HMPREF1058_RS11785 0.55 -0.6 284,926 + HMPREF1058_RS11785 0.59 -1.2 284,927 - HMPREF1058_RS11785 0.59 +0.7 284,933 - HMPREF1058_RS11785 0.59 +1.6 284,949 - HMPREF1058_RS11785 0.60 +0.4 284,949 - HMPREF1058_RS11785 0.60 -0.6 284,955 + HMPREF1058_RS11785 0.61 +1.7 284,956 - HMPREF1058_RS11785 0.61 +1.4 284,979 + HMPREF1058_RS11785 0.63 +0.9 285,061 - HMPREF1058_RS11785 0.70 +1.9 285,067 + HMPREF1058_RS11785 0.70 +0.4 285,067 + HMPREF1058_RS11785 0.70 +1.5 285,067 + HMPREF1058_RS11785 0.70 +0.1 285,067 + HMPREF1058_RS11785 0.70 -0.2 285,067 + HMPREF1058_RS11785 0.70 +0.3 285,067 + HMPREF1058_RS11785 0.70 +1.4 285,088 - HMPREF1058_RS11785 0.72 +0.3
Or see this region's nucleotide sequence