Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11500 and HMPREF1058_RS11495 are separated by 309 nucleotides HMPREF1058_RS11495 and HMPREF1058_RS11490 are separated by 201 nucleotides HMPREF1058_RS11490 and HMPREF1058_RS11485 are separated by 119 nucleotides
HMPREF1058_RS11500: HMPREF1058_RS11500 - DNA polymerase I, at 363,502 to 366,417
_RS11500
HMPREF1058_RS11495: HMPREF1058_RS11495 - DUF3836 domain-containing protein, at 366,727 to 367,113
_RS11495
HMPREF1058_RS11490: HMPREF1058_RS11490 - redox-regulated ATPase YchF, at 367,315 to 368,418
_RS11490
HMPREF1058_RS11485: HMPREF1058_RS11485 - ketopantoate reductase family protein, at 368,538 to 369,449
_RS11485
Position (kb) 367
368
369 Strain fitness (log2 ratio) -1
0
1
2
3 at 366.357 kb on + strand at 366.422 kb on + strand at 366.423 kb on - strand at 366.427 kb on - strand at 366.436 kb on - strand at 366.478 kb on + strand at 366.492 kb on + strand at 366.534 kb on + strand at 366.534 kb on + strand at 366.562 kb on + strand at 366.571 kb on + strand at 366.712 kb on + strand at 366.713 kb on - strand at 366.715 kb on + strand at 366.717 kb on + strand at 366.717 kb on + strand at 366.718 kb on - strand at 366.773 kb on + strand, within HMPREF1058_RS11495 at 366.777 kb on + strand, within HMPREF1058_RS11495 at 366.778 kb on - strand, within HMPREF1058_RS11495 at 366.842 kb on + strand, within HMPREF1058_RS11495 at 366.843 kb on - strand, within HMPREF1058_RS11495 at 366.851 kb on + strand, within HMPREF1058_RS11495 at 366.895 kb on - strand, within HMPREF1058_RS11495 at 366.897 kb on + strand, within HMPREF1058_RS11495 at 366.898 kb on - strand, within HMPREF1058_RS11495 at 366.898 kb on - strand, within HMPREF1058_RS11495 at 366.901 kb on + strand, within HMPREF1058_RS11495 at 366.904 kb on - strand, within HMPREF1058_RS11495 at 366.916 kb on + strand, within HMPREF1058_RS11495 at 366.916 kb on + strand, within HMPREF1058_RS11495 at 366.942 kb on + strand, within HMPREF1058_RS11495 at 367.011 kb on + strand, within HMPREF1058_RS11495 at 367.011 kb on + strand, within HMPREF1058_RS11495 at 367.012 kb on - strand, within HMPREF1058_RS11495 at 367.015 kb on + strand at 367.016 kb on - strand, within HMPREF1058_RS11495 at 367.023 kb on + strand, within HMPREF1058_RS11495 at 367.035 kb on + strand at 367.045 kb on + strand, within HMPREF1058_RS11495 at 367.076 kb on + strand at 367.077 kb on - strand at 367.077 kb on - strand at 367.101 kb on + strand at 367.102 kb on - strand at 367.111 kb on + strand at 367.111 kb on + strand at 367.111 kb on + strand at 367.111 kb on + strand at 367.111 kb on + strand at 367.123 kb on - strand at 367.123 kb on - strand at 367.214 kb on - strand at 367.216 kb on - strand at 367.290 kb on + strand at 367.291 kb on - strand at 367.309 kb on + strand at 367.332 kb on + strand at 367.436 kb on + strand, within HMPREF1058_RS11490 at 367.437 kb on - strand, within HMPREF1058_RS11490 at 367.623 kb on - strand, within HMPREF1058_RS11490 at 367.801 kb on + strand, within HMPREF1058_RS11490 at 367.802 kb on - strand, within HMPREF1058_RS11490 at 367.859 kb on + strand, within HMPREF1058_RS11490 at 367.930 kb on + strand, within HMPREF1058_RS11490 at 367.931 kb on - strand, within HMPREF1058_RS11490 at 367.934 kb on + strand, within HMPREF1058_RS11490 at 367.975 kb on + strand, within HMPREF1058_RS11490 at 367.976 kb on - strand, within HMPREF1058_RS11490 at 368.071 kb on + strand, within HMPREF1058_RS11490 at 368.288 kb on + strand, within HMPREF1058_RS11490 at 368.314 kb on + strand at 368.372 kb on - strand at 368.378 kb on + strand at 368.414 kb on + strand at 368.414 kb on + strand at 368.416 kb on + strand at 368.417 kb on - strand at 368.534 kb on + strand at 368.534 kb on + strand at 368.535 kb on - strand at 368.687 kb on - strand, within HMPREF1058_RS11485 at 368.708 kb on + strand, within HMPREF1058_RS11485 at 368.709 kb on - strand, within HMPREF1058_RS11485 at 368.710 kb on + strand, within HMPREF1058_RS11485 at 368.710 kb on + strand, within HMPREF1058_RS11485 at 368.711 kb on - strand, within HMPREF1058_RS11485 at 368.733 kb on + strand, within HMPREF1058_RS11485 at 368.733 kb on + strand, within HMPREF1058_RS11485 at 368.893 kb on + strand, within HMPREF1058_RS11485 at 368.969 kb on - strand, within HMPREF1058_RS11485 at 369.040 kb on + strand, within HMPREF1058_RS11485 at 369.041 kb on - strand, within HMPREF1058_RS11485 at 369.245 kb on + strand, within HMPREF1058_RS11485
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 366,357 + +0.6 366,422 + -1.0 366,423 - -0.7 366,427 - +0.1 366,436 - -0.1 366,478 + +0.6 366,492 + +1.3 366,534 + -0.2 366,534 + -0.6 366,562 + +0.1 366,571 + +0.3 366,712 + +0.1 366,713 - -0.3 366,715 + -0.7 366,717 + -1.3 366,717 + -0.1 366,718 - +0.7 366,773 + HMPREF1058_RS11495 0.12 +0.2 366,777 + HMPREF1058_RS11495 0.13 +1.3 366,778 - HMPREF1058_RS11495 0.13 +0.1 366,842 + HMPREF1058_RS11495 0.30 -0.5 366,843 - HMPREF1058_RS11495 0.30 -0.1 366,851 + HMPREF1058_RS11495 0.32 -0.2 366,895 - HMPREF1058_RS11495 0.43 -0.0 366,897 + HMPREF1058_RS11495 0.44 +0.4 366,898 - HMPREF1058_RS11495 0.44 +0.9 366,898 - HMPREF1058_RS11495 0.44 +0.7 366,901 + HMPREF1058_RS11495 0.45 -0.4 366,904 - HMPREF1058_RS11495 0.46 -0.3 366,916 + HMPREF1058_RS11495 0.49 +0.0 366,916 + HMPREF1058_RS11495 0.49 -0.4 366,942 + HMPREF1058_RS11495 0.56 +1.8 367,011 + HMPREF1058_RS11495 0.73 -0.2 367,011 + HMPREF1058_RS11495 0.73 +1.2 367,012 - HMPREF1058_RS11495 0.74 +0.6 367,015 + +0.1 367,016 - HMPREF1058_RS11495 0.75 -0.0 367,023 + HMPREF1058_RS11495 0.76 -0.3 367,035 + +1.9 367,045 + HMPREF1058_RS11495 0.82 -1.1 367,076 + -0.8 367,077 - -0.7 367,077 - +0.6 367,101 + -0.8 367,102 - +0.4 367,111 + -1.3 367,111 + +2.0 367,111 + +0.1 367,111 + -0.8 367,111 + -0.4 367,123 - -0.5 367,123 - +0.7 367,214 - -0.1 367,216 - +1.4 367,290 + -0.2 367,291 - +3.4 367,309 + +1.4 367,332 + +2.9 367,436 + HMPREF1058_RS11490 0.11 +1.8 367,437 - HMPREF1058_RS11490 0.11 +1.6 367,623 - HMPREF1058_RS11490 0.28 +1.3 367,801 + HMPREF1058_RS11490 0.44 +1.2 367,802 - HMPREF1058_RS11490 0.44 +2.0 367,859 + HMPREF1058_RS11490 0.49 -0.2 367,930 + HMPREF1058_RS11490 0.56 +0.2 367,931 - HMPREF1058_RS11490 0.56 +0.4 367,934 + HMPREF1058_RS11490 0.56 +2.1 367,975 + HMPREF1058_RS11490 0.60 +0.2 367,976 - HMPREF1058_RS11490 0.60 -0.9 368,071 + HMPREF1058_RS11490 0.68 -0.1 368,288 + HMPREF1058_RS11490 0.88 +1.1 368,314 + +2.8 368,372 - +2.2 368,378 + +1.9 368,414 + +0.8 368,414 + +0.3 368,416 + +0.5 368,417 - -0.8 368,534 + +0.2 368,534 + +0.7 368,535 - +0.6 368,687 - HMPREF1058_RS11485 0.16 -0.5 368,708 + HMPREF1058_RS11485 0.19 +0.0 368,709 - HMPREF1058_RS11485 0.19 +1.4 368,710 + HMPREF1058_RS11485 0.19 +1.3 368,710 + HMPREF1058_RS11485 0.19 -0.3 368,711 - HMPREF1058_RS11485 0.19 +0.3 368,733 + HMPREF1058_RS11485 0.21 +0.5 368,733 + HMPREF1058_RS11485 0.21 +0.5 368,893 + HMPREF1058_RS11485 0.39 +0.1 368,969 - HMPREF1058_RS11485 0.47 -0.4 369,040 + HMPREF1058_RS11485 0.55 +0.7 369,041 - HMPREF1058_RS11485 0.55 -0.1 369,245 + HMPREF1058_RS11485 0.78 +0.9
Or see this region's nucleotide sequence