Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11480 and HMPREF1058_RS11475 are separated by 0 nucleotides HMPREF1058_RS11475 and HMPREF1058_RS11470 are separated by 236 nucleotides HMPREF1058_RS11470 and HMPREF1058_RS11465 are separated by 307 nucleotides HMPREF1058_RS11465 and HMPREF1058_RS11460 are separated by 116 nucleotides
HMPREF1058_RS11480: HMPREF1058_RS11480 - prolipoprotein diacylglyceryl transferase, at 369,446 to 370,267
_RS11480
HMPREF1058_RS11475: HMPREF1058_RS11475 - chloramphenicol acetyltransferase, at 370,268 to 370,924
_RS11475
HMPREF1058_RS11470: HMPREF1058_RS11470 - porin family protein, at 371,161 to 371,859
_RS11470
HMPREF1058_RS11465: HMPREF1058_RS11465 - hypothetical protein, at 372,167 to 372,412
_RS11465
HMPREF1058_RS11460: HMPREF1058_RS11460 - hypothetical protein, at 372,529 to 374,187
_RS11460
Position (kb) 371
372 Strain fitness (log2 ratio) -2
-1
0
1
2 at 370.178 kb on - strand, within HMPREF1058_RS11480 at 370.241 kb on + strand at 370.277 kb on - strand at 370.278 kb on + strand at 370.281 kb on + strand at 370.282 kb on - strand at 370.282 kb on - strand at 370.286 kb on - strand at 370.424 kb on + strand, within HMPREF1058_RS11475 at 370.431 kb on - strand, within HMPREF1058_RS11475 at 370.532 kb on - strand, within HMPREF1058_RS11475 at 370.556 kb on + strand, within HMPREF1058_RS11475 at 370.574 kb on + strand, within HMPREF1058_RS11475 at 370.599 kb on - strand, within HMPREF1058_RS11475 at 370.610 kb on + strand at 370.610 kb on + strand, within HMPREF1058_RS11475 at 370.611 kb on - strand, within HMPREF1058_RS11475 at 370.721 kb on + strand, within HMPREF1058_RS11475 at 370.739 kb on + strand, within HMPREF1058_RS11475 at 370.740 kb on - strand, within HMPREF1058_RS11475 at 370.797 kb on + strand, within HMPREF1058_RS11475 at 370.798 kb on - strand, within HMPREF1058_RS11475 at 370.923 kb on - strand at 370.926 kb on + strand at 370.927 kb on - strand at 370.967 kb on + strand at 370.967 kb on + strand at 370.972 kb on - strand at 371.001 kb on - strand at 371.009 kb on - strand at 371.078 kb on - strand at 371.113 kb on + strand at 371.152 kb on + strand at 371.241 kb on + strand, within HMPREF1058_RS11470 at 371.242 kb on - strand, within HMPREF1058_RS11470 at 371.259 kb on + strand, within HMPREF1058_RS11470 at 371.360 kb on + strand, within HMPREF1058_RS11470 at 371.404 kb on + strand, within HMPREF1058_RS11470 at 371.405 kb on - strand, within HMPREF1058_RS11470 at 371.406 kb on + strand, within HMPREF1058_RS11470 at 371.406 kb on + strand at 371.520 kb on + strand, within HMPREF1058_RS11470 at 371.520 kb on + strand, within HMPREF1058_RS11470 at 371.520 kb on + strand, within HMPREF1058_RS11470 at 371.520 kb on + strand, within HMPREF1058_RS11470 at 371.521 kb on - strand, within HMPREF1058_RS11470 at 371.521 kb on - strand, within HMPREF1058_RS11470 at 371.560 kb on + strand, within HMPREF1058_RS11470 at 371.579 kb on + strand, within HMPREF1058_RS11470 at 371.579 kb on + strand, within HMPREF1058_RS11470 at 371.584 kb on - strand, within HMPREF1058_RS11470 at 371.617 kb on - strand, within HMPREF1058_RS11470 at 371.792 kb on - strand at 371.812 kb on + strand at 371.813 kb on - strand at 371.840 kb on - strand at 371.840 kb on - strand at 371.850 kb on + strand at 371.902 kb on + strand at 371.922 kb on + strand at 371.922 kb on + strand at 371.939 kb on - strand at 371.940 kb on + strand at 371.940 kb on + strand at 371.941 kb on - strand at 371.948 kb on + strand at 371.962 kb on - strand at 371.964 kb on - strand at 372.044 kb on + strand at 372.065 kb on + strand at 372.080 kb on - strand at 372.107 kb on + strand at 372.128 kb on + strand at 372.135 kb on + strand at 372.136 kb on - strand at 372.164 kb on + strand at 372.164 kb on + strand at 372.182 kb on - strand at 372.195 kb on - strand, within HMPREF1058_RS11465 at 372.195 kb on - strand, within HMPREF1058_RS11465 at 372.199 kb on + strand, within HMPREF1058_RS11465 at 372.199 kb on + strand, within HMPREF1058_RS11465 at 372.254 kb on + strand, within HMPREF1058_RS11465 at 372.257 kb on - strand, within HMPREF1058_RS11465 at 372.296 kb on - strand, within HMPREF1058_RS11465 at 372.399 kb on - strand at 372.412 kb on + strand at 372.466 kb on + strand at 372.473 kb on - strand at 372.496 kb on - strand at 372.588 kb on + strand at 372.601 kb on + strand at 372.702 kb on - strand, within HMPREF1058_RS11460 at 372.846 kb on + strand, within HMPREF1058_RS11460 at 372.846 kb on + strand, within HMPREF1058_RS11460 at 372.846 kb on + strand, within HMPREF1058_RS11460 at 372.846 kb on + strand, within HMPREF1058_RS11460 at 372.847 kb on - strand, within HMPREF1058_RS11460
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 370,178 - HMPREF1058_RS11480 0.89 +0.9 370,241 + +1.4 370,277 - -0.8 370,278 + -0.9 370,281 + -1.7 370,282 - +0.1 370,282 - -0.2 370,286 - -1.5 370,424 + HMPREF1058_RS11475 0.24 +0.7 370,431 - HMPREF1058_RS11475 0.25 -1.0 370,532 - HMPREF1058_RS11475 0.40 +0.5 370,556 + HMPREF1058_RS11475 0.44 +0.1 370,574 + HMPREF1058_RS11475 0.47 -0.1 370,599 - HMPREF1058_RS11475 0.50 -0.2 370,610 + -0.9 370,610 + HMPREF1058_RS11475 0.52 +0.2 370,611 - HMPREF1058_RS11475 0.52 -0.6 370,721 + HMPREF1058_RS11475 0.69 +0.3 370,739 + HMPREF1058_RS11475 0.72 +0.8 370,740 - HMPREF1058_RS11475 0.72 -1.7 370,797 + HMPREF1058_RS11475 0.81 +0.9 370,798 - HMPREF1058_RS11475 0.81 -0.3 370,923 - -0.7 370,926 + +0.5 370,927 - +0.4 370,967 + +0.6 370,967 + +0.2 370,972 - +0.0 371,001 - +0.3 371,009 - -0.3 371,078 - +0.1 371,113 + +1.0 371,152 + +1.1 371,241 + HMPREF1058_RS11470 0.11 +0.5 371,242 - HMPREF1058_RS11470 0.12 +0.5 371,259 + HMPREF1058_RS11470 0.14 +0.4 371,360 + HMPREF1058_RS11470 0.28 +0.4 371,404 + HMPREF1058_RS11470 0.35 +0.2 371,405 - HMPREF1058_RS11470 0.35 +1.2 371,406 + HMPREF1058_RS11470 0.35 +0.7 371,406 + +0.7 371,520 + HMPREF1058_RS11470 0.51 +0.2 371,520 + HMPREF1058_RS11470 0.51 +0.7 371,520 + HMPREF1058_RS11470 0.51 +0.4 371,520 + HMPREF1058_RS11470 0.51 +1.0 371,521 - HMPREF1058_RS11470 0.52 +0.7 371,521 - HMPREF1058_RS11470 0.52 +0.7 371,560 + HMPREF1058_RS11470 0.57 +0.7 371,579 + HMPREF1058_RS11470 0.60 +0.8 371,579 + HMPREF1058_RS11470 0.60 +0.8 371,584 - HMPREF1058_RS11470 0.61 +0.9 371,617 - HMPREF1058_RS11470 0.65 +0.4 371,792 - +0.9 371,812 + +0.1 371,813 - +0.4 371,840 - +2.4 371,840 - +0.3 371,850 + +0.2 371,902 + +0.1 371,922 + +0.7 371,922 + -2.2 371,939 - +0.4 371,940 + +1.0 371,940 + +0.7 371,941 - -0.2 371,948 + +1.3 371,962 - -0.1 371,964 - +0.4 372,044 + +0.7 372,065 + -0.0 372,080 - +1.7 372,107 + -0.8 372,128 + +1.0 372,135 + -0.7 372,136 - +0.1 372,164 + +0.0 372,164 + +0.3 372,182 - -0.7 372,195 - HMPREF1058_RS11465 0.11 +0.2 372,195 - HMPREF1058_RS11465 0.11 +0.3 372,199 + HMPREF1058_RS11465 0.13 -1.3 372,199 + HMPREF1058_RS11465 0.13 +0.1 372,254 + HMPREF1058_RS11465 0.35 -0.2 372,257 - HMPREF1058_RS11465 0.37 +0.1 372,296 - HMPREF1058_RS11465 0.52 +0.2 372,399 - -0.6 372,412 + -0.2 372,466 + -0.1 372,473 - +0.4 372,496 - +0.8 372,588 + -1.4 372,601 + +0.1 372,702 - HMPREF1058_RS11460 0.10 -0.8 372,846 + HMPREF1058_RS11460 0.19 +0.3 372,846 + HMPREF1058_RS11460 0.19 +0.2 372,846 + HMPREF1058_RS11460 0.19 +0.1 372,846 + HMPREF1058_RS11460 0.19 -0.2 372,847 - HMPREF1058_RS11460 0.19 -0.1
Or see this region's nucleotide sequence