Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10885

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10890 and HMPREF1058_RS10885 are separated by 245 nucleotidesHMPREF1058_RS10885 and HMPREF1058_RS10880 are separated by 57 nucleotides HMPREF1058_RS10890: HMPREF1058_RS10890 - glycosyltransferase family 2 protein, at 537,184 to 538,167 _RS10890 HMPREF1058_RS10885: HMPREF1058_RS10885 - glycosyltransferase, at 538,413 to 539,729 _RS10885 HMPREF1058_RS10880: HMPREF1058_RS10880 - ABC transporter ATP-binding protein, at 539,787 to 541,625 _RS10880 Position (kb) 538 539 540Strain fitness (log2 ratio) -2 -1 0 1 2 3at 537.531 kb on - strand, within HMPREF1058_RS10890at 537.538 kb on + strand, within HMPREF1058_RS10890at 537.539 kb on - strand, within HMPREF1058_RS10890at 537.563 kb on + strand, within HMPREF1058_RS10890at 537.629 kb on - strand, within HMPREF1058_RS10890at 537.629 kb on - strand, within HMPREF1058_RS10890at 537.629 kb on - strand, within HMPREF1058_RS10890at 537.671 kb on + strand, within HMPREF1058_RS10890at 537.672 kb on - strand, within HMPREF1058_RS10890at 537.672 kb on - strand, within HMPREF1058_RS10890at 537.783 kb on + strand, within HMPREF1058_RS10890at 537.827 kb on + strand, within HMPREF1058_RS10890at 537.828 kb on - strand, within HMPREF1058_RS10890at 537.898 kb on + strand, within HMPREF1058_RS10890at 537.898 kb on + strand, within HMPREF1058_RS10890at 537.898 kb on + strand, within HMPREF1058_RS10890at 537.898 kb on + strand, within HMPREF1058_RS10890at 537.898 kb on + strand, within HMPREF1058_RS10890at 537.898 kb on + strand, within HMPREF1058_RS10890at 537.898 kb on + strand, within HMPREF1058_RS10890at 537.899 kb on - strand, within HMPREF1058_RS10890at 537.899 kb on - strand, within HMPREF1058_RS10890at 537.899 kb on - strand, within HMPREF1058_RS10890at 537.899 kb on - strand, within HMPREF1058_RS10890at 537.899 kb on - strand, within HMPREF1058_RS10890at 537.901 kb on - strand, within HMPREF1058_RS10890at 537.942 kb on + strand, within HMPREF1058_RS10890at 537.942 kb on + strand, within HMPREF1058_RS10890at 537.974 kb on - strand, within HMPREF1058_RS10890at 537.974 kb on - strand, within HMPREF1058_RS10890at 537.979 kb on - strand, within HMPREF1058_RS10890at 538.073 kb on + strandat 538.089 kb on + strandat 538.089 kb on + strandat 538.090 kb on - strandat 538.120 kb on - strandat 538.121 kb on + strandat 538.121 kb on + strandat 538.127 kb on + strandat 538.132 kb on - strandat 538.141 kb on + strandat 538.179 kb on - strandat 538.206 kb on + strandat 538.208 kb on + strandat 538.215 kb on - strandat 538.217 kb on - strandat 538.217 kb on - strandat 538.300 kb on - strandat 538.300 kb on - strandat 538.337 kb on + strandat 538.340 kb on - strandat 538.344 kb on + strandat 538.345 kb on - strandat 538.348 kb on + strandat 538.361 kb on - strandat 538.364 kb on - strandat 538.364 kb on - strandat 538.500 kb on + strandat 538.500 kb on + strandat 538.512 kb on - strandat 538.512 kb on - strandat 538.568 kb on - strand, within HMPREF1058_RS10885at 538.608 kb on - strand, within HMPREF1058_RS10885at 538.611 kb on + strand, within HMPREF1058_RS10885at 538.612 kb on - strand, within HMPREF1058_RS10885at 538.612 kb on - strand, within HMPREF1058_RS10885at 538.614 kb on - strand, within HMPREF1058_RS10885at 538.650 kb on - strand, within HMPREF1058_RS10885at 538.662 kb on + strand, within HMPREF1058_RS10885at 538.663 kb on - strand, within HMPREF1058_RS10885at 538.723 kb on + strand, within HMPREF1058_RS10885at 538.724 kb on - strand, within HMPREF1058_RS10885at 538.756 kb on + strand, within HMPREF1058_RS10885at 538.760 kb on - strand, within HMPREF1058_RS10885at 538.812 kb on + strand, within HMPREF1058_RS10885at 538.812 kb on + strand, within HMPREF1058_RS10885at 538.813 kb on - strand, within HMPREF1058_RS10885at 538.822 kb on - strand, within HMPREF1058_RS10885at 538.857 kb on - strand, within HMPREF1058_RS10885at 538.865 kb on - strand, within HMPREF1058_RS10885at 539.051 kb on + strand, within HMPREF1058_RS10885at 539.061 kb on - strand, within HMPREF1058_RS10885at 539.078 kb on - strand, within HMPREF1058_RS10885at 539.121 kb on - strand, within HMPREF1058_RS10885at 539.280 kb on - strand, within HMPREF1058_RS10885at 539.333 kb on + strand, within HMPREF1058_RS10885at 539.334 kb on - strand, within HMPREF1058_RS10885at 539.379 kb on + strand, within HMPREF1058_RS10885at 539.380 kb on - strand, within HMPREF1058_RS10885at 539.431 kb on + strand, within HMPREF1058_RS10885at 539.432 kb on - strand, within HMPREF1058_RS10885at 539.447 kb on + strand, within HMPREF1058_RS10885at 539.448 kb on - strand, within HMPREF1058_RS10885at 539.474 kb on - strand, within HMPREF1058_RS10885at 539.658 kb on + strandat 539.660 kb on + strandat 539.697 kb on + strandat 539.697 kb on + strandat 539.697 kb on + strandat 539.698 kb on - strandat 539.707 kb on + strandat 539.771 kb on + strandat 539.775 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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537,531 - HMPREF1058_RS10890 0.35 +0.1
537,538 + HMPREF1058_RS10890 0.36 -1.3
537,539 - HMPREF1058_RS10890 0.36 +0.3
537,563 + HMPREF1058_RS10890 0.39 +0.6
537,629 - HMPREF1058_RS10890 0.45 -0.7
537,629 - HMPREF1058_RS10890 0.45 +0.8
537,629 - HMPREF1058_RS10890 0.45 +0.1
537,671 + HMPREF1058_RS10890 0.49 +1.1
537,672 - HMPREF1058_RS10890 0.50 +0.1
537,672 - HMPREF1058_RS10890 0.50 +2.1
537,783 + HMPREF1058_RS10890 0.61 +0.0
537,827 + HMPREF1058_RS10890 0.65 -0.4
537,828 - HMPREF1058_RS10890 0.65 +0.2
537,898 + HMPREF1058_RS10890 0.73 +0.0
537,898 + HMPREF1058_RS10890 0.73 -0.8
537,898 + HMPREF1058_RS10890 0.73 +0.7
537,898 + HMPREF1058_RS10890 0.73 +0.3
537,898 + HMPREF1058_RS10890 0.73 +0.8
537,898 + HMPREF1058_RS10890 0.73 -0.6
537,898 + HMPREF1058_RS10890 0.73 +1.1
537,899 - HMPREF1058_RS10890 0.73 +0.2
537,899 - HMPREF1058_RS10890 0.73 +1.1
537,899 - HMPREF1058_RS10890 0.73 +0.6
537,899 - HMPREF1058_RS10890 0.73 -0.3
537,899 - HMPREF1058_RS10890 0.73 +1.3
537,901 - HMPREF1058_RS10890 0.73 +0.7
537,942 + HMPREF1058_RS10890 0.77 -0.0
537,942 + HMPREF1058_RS10890 0.77 +0.5
537,974 - HMPREF1058_RS10890 0.80 +0.4
537,974 - HMPREF1058_RS10890 0.80 +2.3
537,979 - HMPREF1058_RS10890 0.81 -0.6
538,073 + +0.7
538,089 + +1.0
538,089 + +1.0
538,090 - -0.3
538,120 - -0.2
538,121 + -0.2
538,121 + -0.1
538,127 + +1.2
538,132 - +0.6
538,141 + +0.7
538,179 - +0.6
538,206 + -0.1
538,208 + -2.1
538,215 - -0.3
538,217 - -1.8
538,217 - -0.5
538,300 - +0.3
538,300 - +0.1
538,337 + -0.9
538,340 - +1.2
538,344 + -2.4
538,345 - +0.6
538,348 + -1.1
538,361 - +0.7
538,364 - +3.0
538,364 - +0.0
538,500 + +2.8
538,500 + +0.8
538,512 - +0.8
538,512 - -0.1
538,568 - HMPREF1058_RS10885 0.12 -0.2
538,608 - HMPREF1058_RS10885 0.15 -0.1
538,611 + HMPREF1058_RS10885 0.15 +1.5
538,612 - HMPREF1058_RS10885 0.15 -1.0
538,612 - HMPREF1058_RS10885 0.15 +0.1
538,614 - HMPREF1058_RS10885 0.15 +0.3
538,650 - HMPREF1058_RS10885 0.18 +0.7
538,662 + HMPREF1058_RS10885 0.19 +0.4
538,663 - HMPREF1058_RS10885 0.19 -0.9
538,723 + HMPREF1058_RS10885 0.24 -0.0
538,724 - HMPREF1058_RS10885 0.24 +0.5
538,756 + HMPREF1058_RS10885 0.26 +1.3
538,760 - HMPREF1058_RS10885 0.26 +0.1
538,812 + HMPREF1058_RS10885 0.30 +0.1
538,812 + HMPREF1058_RS10885 0.30 +1.5
538,813 - HMPREF1058_RS10885 0.30 +0.8
538,822 - HMPREF1058_RS10885 0.31 +0.5
538,857 - HMPREF1058_RS10885 0.34 +1.0
538,865 - HMPREF1058_RS10885 0.34 +0.6
539,051 + HMPREF1058_RS10885 0.48 +1.0
539,061 - HMPREF1058_RS10885 0.49 -0.2
539,078 - HMPREF1058_RS10885 0.50 +0.5
539,121 - HMPREF1058_RS10885 0.54 +0.7
539,280 - HMPREF1058_RS10885 0.66 -0.5
539,333 + HMPREF1058_RS10885 0.70 +1.5
539,334 - HMPREF1058_RS10885 0.70 +0.1
539,379 + HMPREF1058_RS10885 0.73 -0.4
539,380 - HMPREF1058_RS10885 0.73 +0.6
539,431 + HMPREF1058_RS10885 0.77 +0.0
539,432 - HMPREF1058_RS10885 0.77 +0.7
539,447 + HMPREF1058_RS10885 0.79 +0.3
539,448 - HMPREF1058_RS10885 0.79 +0.8
539,474 - HMPREF1058_RS10885 0.81 +0.2
539,658 + +0.6
539,660 + +0.9
539,697 + +0.9
539,697 + -0.7
539,697 + +0.9
539,698 - +0.1
539,707 + +0.4
539,771 + +0.1
539,775 + +0.7

Or see this region's nucleotide sequence