Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10875

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10880 and HMPREF1058_RS10875 are separated by 1 nucleotidesHMPREF1058_RS10875 and HMPREF1058_RS20710 are separated by 270 nucleotidesHMPREF1058_RS20710 and HMPREF1058_RS10870 are separated by 334 nucleotides HMPREF1058_RS10880: HMPREF1058_RS10880 - ABC transporter ATP-binding protein, at 539,787 to 541,625 _RS10880 HMPREF1058_RS10875: HMPREF1058_RS10875 - glycosyltransferase, at 541,627 to 542,559 _RS10875 HMPREF1058_RS20710: HMPREF1058_RS20710 - left-handed beta-roll domain-containing protein, at 542,830 to 542,952 _RS20710 HMPREF1058_RS10870: HMPREF1058_RS10870 - hypothetical protein, at 543,287 to 544,744 _RS10870 Position (kb) 541 542 543Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 541.656 kb on + strandat 541.738 kb on + strand, within HMPREF1058_RS10875at 541.738 kb on + strand, within HMPREF1058_RS10875at 541.738 kb on + strand, within HMPREF1058_RS10875at 541.739 kb on - strand, within HMPREF1058_RS10875at 541.739 kb on - strand, within HMPREF1058_RS10875at 541.739 kb on - strand, within HMPREF1058_RS10875at 541.739 kb on - strand, within HMPREF1058_RS10875at 541.740 kb on + strand, within HMPREF1058_RS10875at 541.740 kb on + strand, within HMPREF1058_RS10875at 541.741 kb on - strand, within HMPREF1058_RS10875at 541.741 kb on - strand, within HMPREF1058_RS10875at 541.741 kb on - strand, within HMPREF1058_RS10875at 541.741 kb on - strand, within HMPREF1058_RS10875at 541.743 kb on - strand, within HMPREF1058_RS10875at 542.006 kb on + strand, within HMPREF1058_RS10875at 542.076 kb on - strand, within HMPREF1058_RS10875at 542.131 kb on + strand, within HMPREF1058_RS10875at 542.150 kb on + strand, within HMPREF1058_RS10875at 542.150 kb on + strand, within HMPREF1058_RS10875at 542.244 kb on + strand, within HMPREF1058_RS10875at 542.367 kb on + strand, within HMPREF1058_RS10875at 542.368 kb on - strand, within HMPREF1058_RS10875at 542.419 kb on + strand, within HMPREF1058_RS10875at 542.419 kb on + strand, within HMPREF1058_RS10875at 542.420 kb on - strand, within HMPREF1058_RS10875at 542.420 kb on - strand, within HMPREF1058_RS10875at 542.420 kb on - strand, within HMPREF1058_RS10875at 542.420 kb on - strand, within HMPREF1058_RS10875at 542.420 kb on - strand, within HMPREF1058_RS10875at 542.451 kb on + strand, within HMPREF1058_RS10875at 542.458 kb on + strand, within HMPREF1058_RS10875at 542.461 kb on - strand, within HMPREF1058_RS10875at 542.463 kb on + strand, within HMPREF1058_RS10875at 542.464 kb on - strand, within HMPREF1058_RS10875at 542.464 kb on - strand, within HMPREF1058_RS10875at 542.464 kb on - strand, within HMPREF1058_RS10875at 542.464 kb on - strand, within HMPREF1058_RS10875at 542.464 kb on - strand, within HMPREF1058_RS10875at 542.465 kb on + strand, within HMPREF1058_RS10875at 542.465 kb on + strand, within HMPREF1058_RS10875at 542.465 kb on + strand, within HMPREF1058_RS10875at 542.465 kb on + strand, within HMPREF1058_RS10875at 542.466 kb on - strandat 542.466 kb on - strandat 542.466 kb on - strandat 542.487 kb on + strandat 542.488 kb on - strandat 542.523 kb on + strandat 542.524 kb on - strandat 542.567 kb on + strandat 542.626 kb on + strandat 542.626 kb on + strandat 542.626 kb on + strandat 542.627 kb on - strandat 542.627 kb on - strandat 542.627 kb on - strandat 542.627 kb on - strandat 542.627 kb on - strandat 542.656 kb on + strandat 542.660 kb on + strandat 542.661 kb on - strandat 542.672 kb on + strandat 542.687 kb on + strandat 542.690 kb on - strandat 542.950 kb on + strandat 542.973 kb on - strandat 542.994 kb on + strandat 542.994 kb on + strandat 542.994 kb on + strandat 542.995 kb on - strandat 542.995 kb on - strandat 542.995 kb on - strandat 542.995 kb on - strandat 542.995 kb on - strandat 542.995 kb on - strandat 542.995 kb on - strandat 542.998 kb on + strandat 542.998 kb on + strandat 542.998 kb on + strandat 543.125 kb on + strandat 543.150 kb on + strandat 543.192 kb on - strandat 543.207 kb on - strandat 543.230 kb on + strandat 543.230 kb on + strandat 543.262 kb on + strandat 543.282 kb on + strandat 543.287 kb on - strandat 543.310 kb on - strandat 543.443 kb on + strand, within HMPREF1058_RS10870at 543.444 kb on - strand, within HMPREF1058_RS10870at 543.450 kb on + strand, within HMPREF1058_RS10870at 543.461 kb on + strand, within HMPREF1058_RS10870at 543.461 kb on + strand, within HMPREF1058_RS10870at 543.502 kb on - strand, within HMPREF1058_RS10870at 543.512 kb on - strand, within HMPREF1058_RS10870at 543.521 kb on - strand, within HMPREF1058_RS10870at 543.557 kb on - strand, within HMPREF1058_RS10870at 543.558 kb on + strand, within HMPREF1058_RS10870

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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541,656 + +1.1
541,738 + HMPREF1058_RS10875 0.12 +0.4
541,738 + HMPREF1058_RS10875 0.12 +0.4
541,738 + HMPREF1058_RS10875 0.12 +0.7
541,739 - HMPREF1058_RS10875 0.12 +0.7
541,739 - HMPREF1058_RS10875 0.12 -0.5
541,739 - HMPREF1058_RS10875 0.12 +2.1
541,739 - HMPREF1058_RS10875 0.12 +1.4
541,740 + HMPREF1058_RS10875 0.12 +0.9
541,740 + HMPREF1058_RS10875 0.12 +1.0
541,741 - HMPREF1058_RS10875 0.12 +0.9
541,741 - HMPREF1058_RS10875 0.12 +0.9
541,741 - HMPREF1058_RS10875 0.12 +0.6
541,741 - HMPREF1058_RS10875 0.12 +0.3
541,743 - HMPREF1058_RS10875 0.12 +0.5
542,006 + HMPREF1058_RS10875 0.41 +0.5
542,076 - HMPREF1058_RS10875 0.48 +0.9
542,131 + HMPREF1058_RS10875 0.54 -0.5
542,150 + HMPREF1058_RS10875 0.56 +1.0
542,150 + HMPREF1058_RS10875 0.56 -0.3
542,244 + HMPREF1058_RS10875 0.66 +0.3
542,367 + HMPREF1058_RS10875 0.79 +0.2
542,368 - HMPREF1058_RS10875 0.79 +0.3
542,419 + HMPREF1058_RS10875 0.85 +1.1
542,419 + HMPREF1058_RS10875 0.85 +0.8
542,420 - HMPREF1058_RS10875 0.85 +0.3
542,420 - HMPREF1058_RS10875 0.85 +0.9
542,420 - HMPREF1058_RS10875 0.85 +0.6
542,420 - HMPREF1058_RS10875 0.85 +2.0
542,420 - HMPREF1058_RS10875 0.85 +1.1
542,451 + HMPREF1058_RS10875 0.88 +0.6
542,458 + HMPREF1058_RS10875 0.89 +0.3
542,461 - HMPREF1058_RS10875 0.89 +0.2
542,463 + HMPREF1058_RS10875 0.90 +0.8
542,464 - HMPREF1058_RS10875 0.90 +0.5
542,464 - HMPREF1058_RS10875 0.90 -0.6
542,464 - HMPREF1058_RS10875 0.90 -0.3
542,464 - HMPREF1058_RS10875 0.90 +0.1
542,464 - HMPREF1058_RS10875 0.90 -0.2
542,465 + HMPREF1058_RS10875 0.90 +3.1
542,465 + HMPREF1058_RS10875 0.90 +0.1
542,465 + HMPREF1058_RS10875 0.90 +0.6
542,465 + HMPREF1058_RS10875 0.90 +0.9
542,466 - +1.0
542,466 - +0.6
542,466 - +0.4
542,487 + -0.1
542,488 - +0.2
542,523 + +0.8
542,524 - +0.9
542,567 + -0.0
542,626 + -0.1
542,626 + +0.3
542,626 + -0.8
542,627 - -0.7
542,627 - +0.4
542,627 - +0.1
542,627 - -1.0
542,627 - +0.4
542,656 + -0.5
542,660 + +0.3
542,661 - +0.2
542,672 + +0.8
542,687 + +0.1
542,690 - -1.5
542,950 + +0.0
542,973 - -0.0
542,994 + -0.9
542,994 + -0.4
542,994 + -2.9
542,995 - +1.3
542,995 - -1.6
542,995 - +0.1
542,995 - +0.2
542,995 - -1.6
542,995 - -0.1
542,995 - +2.8
542,998 + -0.2
542,998 + -0.3
542,998 + +0.5
543,125 + -0.2
543,150 + -0.6
543,192 - -1.0
543,207 - +0.2
543,230 + -0.8
543,230 + +0.7
543,262 + -0.7
543,282 + -0.3
543,287 - -1.0
543,310 - -0.5
543,443 + HMPREF1058_RS10870 0.11 +0.5
543,444 - HMPREF1058_RS10870 0.11 -0.9
543,450 + HMPREF1058_RS10870 0.11 -0.3
543,461 + HMPREF1058_RS10870 0.12 +1.0
543,461 + HMPREF1058_RS10870 0.12 +0.2
543,502 - HMPREF1058_RS10870 0.15 -0.1
543,512 - HMPREF1058_RS10870 0.15 -0.7
543,521 - HMPREF1058_RS10870 0.16 -0.9
543,557 - HMPREF1058_RS10870 0.19 -0.8
543,558 + HMPREF1058_RS10870 0.19 +0.0

Or see this region's nucleotide sequence