Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10645 and HMPREF1058_RS10640 are separated by 162 nucleotides HMPREF1058_RS10640 and HMPREF1058_RS10635 are separated by 743 nucleotides
HMPREF1058_RS10645: HMPREF1058_RS10645 - ATP-binding protein, at 609,468 to 611,042
_RS10645
HMPREF1058_RS10640: HMPREF1058_RS10640 - outer membrane lipoprotein carrier protein LolA, at 611,205 to 611,840
_RS10640
HMPREF1058_RS10635: HMPREF1058_RS10635 - polysaccharide deacetylase family protein, at 612,584 to 613,276
_RS10635
Position (kb) 611
612 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 610.240 kb on + strand, within HMPREF1058_RS10645 at 610.241 kb on + strand, within HMPREF1058_RS10645 at 610.242 kb on + strand, within HMPREF1058_RS10645 at 610.243 kb on - strand, within HMPREF1058_RS10645 at 610.243 kb on - strand, within HMPREF1058_RS10645 at 610.316 kb on + strand, within HMPREF1058_RS10645 at 610.361 kb on - strand, within HMPREF1058_RS10645 at 610.382 kb on + strand, within HMPREF1058_RS10645 at 610.732 kb on + strand, within HMPREF1058_RS10645 at 610.874 kb on - strand, within HMPREF1058_RS10645 at 610.951 kb on - strand at 610.984 kb on + strand at 611.077 kb on + strand at 611.086 kb on - strand at 611.086 kb on - strand at 611.105 kb on - strand at 611.302 kb on - strand, within HMPREF1058_RS10640 at 611.354 kb on + strand, within HMPREF1058_RS10640 at 611.355 kb on - strand, within HMPREF1058_RS10640 at 611.356 kb on + strand, within HMPREF1058_RS10640 at 611.357 kb on - strand, within HMPREF1058_RS10640 at 611.357 kb on - strand, within HMPREF1058_RS10640 at 611.581 kb on + strand, within HMPREF1058_RS10640 at 611.581 kb on + strand, within HMPREF1058_RS10640 at 611.627 kb on + strand, within HMPREF1058_RS10640 at 611.632 kb on + strand, within HMPREF1058_RS10640 at 611.633 kb on - strand, within HMPREF1058_RS10640 at 611.678 kb on - strand, within HMPREF1058_RS10640 at 611.802 kb on - strand at 611.823 kb on + strand at 611.885 kb on - strand at 611.887 kb on - strand at 611.919 kb on - strand at 611.964 kb on - strand at 612.023 kb on - strand at 612.156 kb on + strand at 612.186 kb on + strand at 612.269 kb on + strand at 612.272 kb on - strand at 612.316 kb on - strand at 612.344 kb on + strand at 612.345 kb on - strand at 612.345 kb on - strand at 612.482 kb on + strand at 612.482 kb on + strand at 612.506 kb on - strand at 612.628 kb on + strand at 612.628 kb on + strand at 612.807 kb on + strand, within HMPREF1058_RS10635 at 612.807 kb on + strand, within HMPREF1058_RS10635 at 612.807 kb on + strand, within HMPREF1058_RS10635 at 612.807 kb on + strand, within HMPREF1058_RS10635
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 610,240 + HMPREF1058_RS10645 0.49 +2.1 610,241 + HMPREF1058_RS10645 0.49 -0.3 610,242 + HMPREF1058_RS10645 0.49 +3.1 610,243 - HMPREF1058_RS10645 0.49 -1.6 610,243 - HMPREF1058_RS10645 0.49 +2.1 610,316 + HMPREF1058_RS10645 0.54 +0.8 610,361 - HMPREF1058_RS10645 0.57 +0.7 610,382 + HMPREF1058_RS10645 0.58 +0.8 610,732 + HMPREF1058_RS10645 0.80 +0.4 610,874 - HMPREF1058_RS10645 0.89 -0.1 610,951 - -0.6 610,984 + +1.7 611,077 + +0.5 611,086 - +0.0 611,086 - +0.4 611,105 - -1.2 611,302 - HMPREF1058_RS10640 0.15 +1.1 611,354 + HMPREF1058_RS10640 0.23 +0.8 611,355 - HMPREF1058_RS10640 0.24 +0.3 611,356 + HMPREF1058_RS10640 0.24 +0.6 611,357 - HMPREF1058_RS10640 0.24 +0.7 611,357 - HMPREF1058_RS10640 0.24 +0.4 611,581 + HMPREF1058_RS10640 0.59 -0.0 611,581 + HMPREF1058_RS10640 0.59 +0.0 611,627 + HMPREF1058_RS10640 0.66 +0.3 611,632 + HMPREF1058_RS10640 0.67 +1.3 611,633 - HMPREF1058_RS10640 0.67 +0.7 611,678 - HMPREF1058_RS10640 0.74 -0.1 611,802 - -0.2 611,823 + +0.1 611,885 - -0.0 611,887 - +0.2 611,919 - +0.3 611,964 - -0.3 612,023 - +0.0 612,156 + -0.5 612,186 + +0.1 612,269 + -0.3 612,272 - -0.5 612,316 - +0.3 612,344 + -0.7 612,345 - -0.3 612,345 - -0.6 612,482 + +0.1 612,482 + -0.3 612,506 - -0.1 612,628 + +1.0 612,628 + +0.1 612,807 + HMPREF1058_RS10635 0.32 -0.0 612,807 + HMPREF1058_RS10635 0.32 +0.3 612,807 + HMPREF1058_RS10635 0.32 +0.1 612,807 + HMPREF1058_RS10635 0.32 -2.0
Or see this region's nucleotide sequence