Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10515 and HMPREF1058_RS10510 are separated by 2 nucleotides HMPREF1058_RS10510 and HMPREF1058_RS10505 are separated by 171 nucleotides HMPREF1058_RS10505 and HMPREF1058_RS10500 are separated by 92 nucleotides HMPREF1058_RS10500 and HMPREF1058_RS10495 are separated by 210 nucleotides
HMPREF1058_RS10515: HMPREF1058_RS10515 - tRNA 2-thiouridine(34) synthase MnmA, at 648,915 to 649,970
_RS10515
HMPREF1058_RS10510: HMPREF1058_RS10510 - virulence RhuM family protein, at 649,973 to 650,443
_RS10510
HMPREF1058_RS10505: HMPREF1058_RS10505 - DUF4981 domain-containing protein, at 650,615 to 653,944
_RS10505
HMPREF1058_RS10500: HMPREF1058_RS10500 - HU family DNA-binding protein, at 654,037 to 654,309
_RS10500
HMPREF1058_RS10495: HMPREF1058_RS10495 - rhomboid family intramembrane serine protease, at 654,520 to 655,197
_RS10495
Position (kb) 650
651
652
653
654 Strain fitness (log2 ratio) -2
-1
0
1
2 at 649.669 kb on + strand, within HMPREF1058_RS10515 at 649.669 kb on + strand, within HMPREF1058_RS10515 at 649.670 kb on - strand, within HMPREF1058_RS10515 at 649.713 kb on - strand, within HMPREF1058_RS10515 at 649.713 kb on - strand, within HMPREF1058_RS10515 at 649.768 kb on + strand, within HMPREF1058_RS10515 at 649.769 kb on - strand at 649.769 kb on - strand, within HMPREF1058_RS10515 at 649.847 kb on - strand, within HMPREF1058_RS10515 at 649.975 kb on - strand at 649.993 kb on + strand at 650.069 kb on + strand, within HMPREF1058_RS10510 at 650.070 kb on - strand, within HMPREF1058_RS10510 at 650.084 kb on + strand, within HMPREF1058_RS10510 at 650.085 kb on - strand, within HMPREF1058_RS10510 at 650.188 kb on + strand, within HMPREF1058_RS10510 at 650.189 kb on - strand, within HMPREF1058_RS10510 at 650.191 kb on - strand, within HMPREF1058_RS10510 at 650.194 kb on - strand, within HMPREF1058_RS10510 at 650.298 kb on - strand, within HMPREF1058_RS10510 at 650.339 kb on + strand, within HMPREF1058_RS10510 at 650.343 kb on - strand, within HMPREF1058_RS10510 at 650.416 kb on - strand at 650.420 kb on + strand at 650.479 kb on - strand at 650.549 kb on + strand at 650.549 kb on + strand at 650.578 kb on + strand at 650.579 kb on - strand at 650.587 kb on + strand at 650.608 kb on + strand at 650.737 kb on + strand at 650.737 kb on + strand at 650.738 kb on - strand at 650.738 kb on - strand at 650.741 kb on + strand at 650.742 kb on - strand at 650.793 kb on - strand at 650.793 kb on - strand at 650.873 kb on - strand at 650.946 kb on - strand at 651.024 kb on + strand, within HMPREF1058_RS10505 at 651.025 kb on - strand, within HMPREF1058_RS10505 at 651.025 kb on - strand, within HMPREF1058_RS10505 at 651.025 kb on - strand, within HMPREF1058_RS10505 at 651.096 kb on + strand, within HMPREF1058_RS10505 at 651.241 kb on + strand, within HMPREF1058_RS10505 at 651.241 kb on + strand, within HMPREF1058_RS10505 at 651.287 kb on - strand, within HMPREF1058_RS10505 at 651.322 kb on - strand, within HMPREF1058_RS10505 at 651.328 kb on + strand, within HMPREF1058_RS10505 at 651.366 kb on + strand, within HMPREF1058_RS10505 at 651.378 kb on - strand, within HMPREF1058_RS10505 at 651.380 kb on + strand, within HMPREF1058_RS10505 at 651.381 kb on - strand, within HMPREF1058_RS10505 at 651.409 kb on + strand, within HMPREF1058_RS10505 at 651.540 kb on + strand, within HMPREF1058_RS10505 at 651.562 kb on - strand, within HMPREF1058_RS10505 at 651.604 kb on + strand, within HMPREF1058_RS10505 at 651.604 kb on + strand, within HMPREF1058_RS10505 at 651.604 kb on + strand, within HMPREF1058_RS10505 at 651.605 kb on - strand, within HMPREF1058_RS10505 at 651.605 kb on - strand, within HMPREF1058_RS10505 at 651.668 kb on - strand, within HMPREF1058_RS10505 at 651.783 kb on + strand, within HMPREF1058_RS10505 at 651.857 kb on + strand, within HMPREF1058_RS10505 at 651.907 kb on - strand, within HMPREF1058_RS10505 at 651.918 kb on + strand, within HMPREF1058_RS10505 at 651.919 kb on - strand, within HMPREF1058_RS10505 at 652.012 kb on - strand, within HMPREF1058_RS10505 at 652.012 kb on - strand, within HMPREF1058_RS10505 at 652.012 kb on - strand, within HMPREF1058_RS10505 at 652.012 kb on - strand, within HMPREF1058_RS10505 at 652.129 kb on + strand, within HMPREF1058_RS10505 at 652.130 kb on - strand, within HMPREF1058_RS10505 at 652.157 kb on - strand, within HMPREF1058_RS10505 at 652.238 kb on - strand, within HMPREF1058_RS10505 at 652.347 kb on + strand, within HMPREF1058_RS10505 at 652.347 kb on + strand, within HMPREF1058_RS10505 at 652.347 kb on + strand, within HMPREF1058_RS10505 at 652.347 kb on + strand, within HMPREF1058_RS10505 at 652.347 kb on + strand, within HMPREF1058_RS10505 at 652.347 kb on + strand, within HMPREF1058_RS10505 at 652.347 kb on + strand, within HMPREF1058_RS10505 at 652.348 kb on - strand, within HMPREF1058_RS10505 at 652.348 kb on - strand, within HMPREF1058_RS10505 at 652.348 kb on - strand, within HMPREF1058_RS10505 at 652.348 kb on - strand, within HMPREF1058_RS10505 at 652.348 kb on - strand, within HMPREF1058_RS10505 at 652.351 kb on + strand, within HMPREF1058_RS10505 at 652.351 kb on + strand, within HMPREF1058_RS10505 at 652.352 kb on - strand, within HMPREF1058_RS10505 at 652.388 kb on + strand, within HMPREF1058_RS10505 at 652.431 kb on - strand, within HMPREF1058_RS10505 at 652.435 kb on - strand, within HMPREF1058_RS10505 at 652.435 kb on - strand, within HMPREF1058_RS10505 at 652.522 kb on + strand, within HMPREF1058_RS10505 at 652.523 kb on - strand, within HMPREF1058_RS10505 at 652.523 kb on - strand, within HMPREF1058_RS10505 at 652.523 kb on - strand, within HMPREF1058_RS10505 at 652.525 kb on + strand, within HMPREF1058_RS10505 at 652.599 kb on - strand, within HMPREF1058_RS10505 at 652.600 kb on - strand, within HMPREF1058_RS10505 at 652.617 kb on - strand, within HMPREF1058_RS10505 at 652.634 kb on + strand, within HMPREF1058_RS10505 at 652.638 kb on + strand, within HMPREF1058_RS10505 at 652.638 kb on + strand, within HMPREF1058_RS10505 at 652.638 kb on + strand, within HMPREF1058_RS10505 at 652.638 kb on + strand, within HMPREF1058_RS10505 at 652.639 kb on - strand, within HMPREF1058_RS10505 at 652.639 kb on - strand, within HMPREF1058_RS10505 at 652.639 kb on - strand, within HMPREF1058_RS10505 at 652.764 kb on + strand, within HMPREF1058_RS10505 at 652.764 kb on + strand, within HMPREF1058_RS10505 at 652.764 kb on + strand, within HMPREF1058_RS10505 at 652.765 kb on - strand, within HMPREF1058_RS10505 at 652.765 kb on - strand, within HMPREF1058_RS10505 at 652.783 kb on + strand, within HMPREF1058_RS10505 at 652.793 kb on + strand, within HMPREF1058_RS10505 at 653.065 kb on + strand, within HMPREF1058_RS10505 at 653.170 kb on + strand, within HMPREF1058_RS10505 at 653.179 kb on + strand, within HMPREF1058_RS10505 at 653.181 kb on + strand, within HMPREF1058_RS10505 at 653.249 kb on + strand, within HMPREF1058_RS10505 at 653.358 kb on + strand, within HMPREF1058_RS10505 at 653.433 kb on + strand, within HMPREF1058_RS10505 at 653.436 kb on - strand, within HMPREF1058_RS10505 at 653.469 kb on - strand, within HMPREF1058_RS10505 at 653.615 kb on + strand at 653.616 kb on - strand at 653.709 kb on + strand at 653.712 kb on + strand at 653.726 kb on - strand at 653.742 kb on + strand at 653.742 kb on + strand at 653.846 kb on - strand at 653.861 kb on + strand at 654.039 kb on - strand at 654.099 kb on + strand, within HMPREF1058_RS10500 at 654.099 kb on + strand, within HMPREF1058_RS10500 at 654.099 kb on + strand, within HMPREF1058_RS10500 at 654.100 kb on - strand, within HMPREF1058_RS10500 at 654.215 kb on - strand, within HMPREF1058_RS10500 at 654.322 kb on + strand at 654.330 kb on - strand at 654.335 kb on + strand at 654.368 kb on + strand at 654.369 kb on - strand at 654.515 kb on + strand at 654.601 kb on + strand, within HMPREF1058_RS10495 at 654.681 kb on + strand, within HMPREF1058_RS10495 at 654.792 kb on + strand, within HMPREF1058_RS10495 at 654.796 kb on + strand, within HMPREF1058_RS10495
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 649,669 + HMPREF1058_RS10515 0.71 +0.0 649,669 + HMPREF1058_RS10515 0.71 +0.4 649,670 - HMPREF1058_RS10515 0.71 -0.4 649,713 - HMPREF1058_RS10515 0.76 +0.3 649,713 - HMPREF1058_RS10515 0.76 +0.8 649,768 + HMPREF1058_RS10515 0.81 +0.8 649,769 - +0.9 649,769 - HMPREF1058_RS10515 0.81 +0.2 649,847 - HMPREF1058_RS10515 0.88 +0.2 649,975 - +0.1 649,993 + -0.2 650,069 + HMPREF1058_RS10510 0.20 +0.9 650,070 - HMPREF1058_RS10510 0.21 -0.2 650,084 + HMPREF1058_RS10510 0.24 +2.1 650,085 - HMPREF1058_RS10510 0.24 -0.5 650,188 + HMPREF1058_RS10510 0.46 -0.1 650,189 - HMPREF1058_RS10510 0.46 -0.4 650,191 - HMPREF1058_RS10510 0.46 +0.5 650,194 - HMPREF1058_RS10510 0.47 -0.6 650,298 - HMPREF1058_RS10510 0.69 -1.6 650,339 + HMPREF1058_RS10510 0.78 -0.1 650,343 - HMPREF1058_RS10510 0.79 -0.5 650,416 - +0.2 650,420 + +0.6 650,479 - +1.1 650,549 + -1.9 650,549 + -0.8 650,578 + -1.3 650,579 - +0.6 650,587 + -0.3 650,608 + -1.8 650,737 + -1.8 650,737 + -2.0 650,738 - -0.3 650,738 - -0.4 650,741 + -2.3 650,742 - -0.7 650,793 - -0.6 650,793 - -0.4 650,873 - -0.0 650,946 - -0.8 651,024 + HMPREF1058_RS10505 0.12 -1.8 651,025 - HMPREF1058_RS10505 0.12 +0.3 651,025 - HMPREF1058_RS10505 0.12 +1.3 651,025 - HMPREF1058_RS10505 0.12 -1.2 651,096 + HMPREF1058_RS10505 0.14 +0.0 651,241 + HMPREF1058_RS10505 0.19 -1.0 651,241 + HMPREF1058_RS10505 0.19 +1.6 651,287 - HMPREF1058_RS10505 0.20 +0.1 651,322 - HMPREF1058_RS10505 0.21 -0.1 651,328 + HMPREF1058_RS10505 0.21 +0.8 651,366 + HMPREF1058_RS10505 0.23 -1.1 651,378 - HMPREF1058_RS10505 0.23 -1.0 651,380 + HMPREF1058_RS10505 0.23 -0.5 651,381 - HMPREF1058_RS10505 0.23 +0.3 651,409 + HMPREF1058_RS10505 0.24 -0.4 651,540 + HMPREF1058_RS10505 0.28 -0.4 651,562 - HMPREF1058_RS10505 0.28 +2.3 651,604 + HMPREF1058_RS10505 0.30 -0.8 651,604 + HMPREF1058_RS10505 0.30 -0.9 651,604 + HMPREF1058_RS10505 0.30 +0.4 651,605 - HMPREF1058_RS10505 0.30 -1.0 651,605 - HMPREF1058_RS10505 0.30 -0.6 651,668 - HMPREF1058_RS10505 0.32 -0.1 651,783 + HMPREF1058_RS10505 0.35 +0.7 651,857 + HMPREF1058_RS10505 0.37 -1.1 651,907 - HMPREF1058_RS10505 0.39 -0.1 651,918 + HMPREF1058_RS10505 0.39 -0.3 651,919 - HMPREF1058_RS10505 0.39 -0.8 652,012 - HMPREF1058_RS10505 0.42 -0.6 652,012 - HMPREF1058_RS10505 0.42 -1.5 652,012 - HMPREF1058_RS10505 0.42 +0.2 652,012 - HMPREF1058_RS10505 0.42 -0.7 652,129 + HMPREF1058_RS10505 0.45 -0.9 652,130 - HMPREF1058_RS10505 0.45 -1.1 652,157 - HMPREF1058_RS10505 0.46 -1.2 652,238 - HMPREF1058_RS10505 0.49 -0.9 652,347 + HMPREF1058_RS10505 0.52 -1.8 652,347 + HMPREF1058_RS10505 0.52 -0.6 652,347 + HMPREF1058_RS10505 0.52 +0.1 652,347 + HMPREF1058_RS10505 0.52 -0.5 652,347 + HMPREF1058_RS10505 0.52 -1.9 652,347 + HMPREF1058_RS10505 0.52 +0.6 652,347 + HMPREF1058_RS10505 0.52 -0.7 652,348 - HMPREF1058_RS10505 0.52 -1.9 652,348 - HMPREF1058_RS10505 0.52 -0.4 652,348 - HMPREF1058_RS10505 0.52 -0.3 652,348 - HMPREF1058_RS10505 0.52 -1.0 652,348 - HMPREF1058_RS10505 0.52 +0.1 652,351 + HMPREF1058_RS10505 0.52 -0.5 652,351 + HMPREF1058_RS10505 0.52 -0.1 652,352 - HMPREF1058_RS10505 0.52 +0.1 652,388 + HMPREF1058_RS10505 0.53 -0.4 652,431 - HMPREF1058_RS10505 0.55 -0.7 652,435 - HMPREF1058_RS10505 0.55 -0.3 652,435 - HMPREF1058_RS10505 0.55 +2.3 652,522 + HMPREF1058_RS10505 0.57 +0.3 652,523 - HMPREF1058_RS10505 0.57 -0.5 652,523 - HMPREF1058_RS10505 0.57 -1.2 652,523 - HMPREF1058_RS10505 0.57 -1.2 652,525 + HMPREF1058_RS10505 0.57 -0.1 652,599 - HMPREF1058_RS10505 0.60 -0.1 652,600 - HMPREF1058_RS10505 0.60 +0.2 652,617 - HMPREF1058_RS10505 0.60 -0.1 652,634 + HMPREF1058_RS10505 0.61 -1.2 652,638 + HMPREF1058_RS10505 0.61 +0.3 652,638 + HMPREF1058_RS10505 0.61 -0.6 652,638 + HMPREF1058_RS10505 0.61 -0.8 652,638 + HMPREF1058_RS10505 0.61 -0.7 652,639 - HMPREF1058_RS10505 0.61 -0.9 652,639 - HMPREF1058_RS10505 0.61 -0.9 652,639 - HMPREF1058_RS10505 0.61 +1.1 652,764 + HMPREF1058_RS10505 0.65 -0.7 652,764 + HMPREF1058_RS10505 0.65 -1.0 652,764 + HMPREF1058_RS10505 0.65 -1.2 652,765 - HMPREF1058_RS10505 0.65 -1.2 652,765 - HMPREF1058_RS10505 0.65 -0.8 652,783 + HMPREF1058_RS10505 0.65 +0.8 652,793 + HMPREF1058_RS10505 0.65 -0.8 653,065 + HMPREF1058_RS10505 0.74 -0.3 653,170 + HMPREF1058_RS10505 0.77 +0.0 653,179 + HMPREF1058_RS10505 0.77 -0.3 653,181 + HMPREF1058_RS10505 0.77 -2.3 653,249 + HMPREF1058_RS10505 0.79 -0.8 653,358 + HMPREF1058_RS10505 0.82 -1.3 653,433 + HMPREF1058_RS10505 0.85 -2.0 653,436 - HMPREF1058_RS10505 0.85 -1.3 653,469 - HMPREF1058_RS10505 0.86 -0.2 653,615 + -0.4 653,616 - -0.5 653,709 + +0.7 653,712 + +0.6 653,726 - +0.2 653,742 + +0.1 653,742 + -0.1 653,846 - -0.3 653,861 + +1.0 654,039 - +1.5 654,099 + HMPREF1058_RS10500 0.23 +1.3 654,099 + HMPREF1058_RS10500 0.23 +1.6 654,099 + HMPREF1058_RS10500 0.23 +2.0 654,100 - HMPREF1058_RS10500 0.23 +1.9 654,215 - HMPREF1058_RS10500 0.65 +2.1 654,322 + +1.6 654,330 - +0.3 654,335 + +2.4 654,368 + +1.6 654,369 - -0.1 654,515 + +0.6 654,601 + HMPREF1058_RS10495 0.12 +0.0 654,681 + HMPREF1058_RS10495 0.24 +2.1 654,792 + HMPREF1058_RS10495 0.40 +1.9 654,796 + HMPREF1058_RS10495 0.41 -2.2
Or see this region's nucleotide sequence