Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10395

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10405 and HMPREF1058_RS10400 are separated by 37 nucleotidesHMPREF1058_RS10400 and HMPREF1058_RS10395 are separated by 1 nucleotidesHMPREF1058_RS10395 and HMPREF1058_RS10390 overlap by 11 nucleotidesHMPREF1058_RS10390 and HMPREF1058_RS10385 overlap by 4 nucleotides HMPREF1058_RS10405: HMPREF1058_RS10405 - hypothetical protein, at 676,706 to 678,133 _RS10405 HMPREF1058_RS10400: HMPREF1058_RS10400 - hypothetical protein, at 678,171 to 678,932 _RS10400 HMPREF1058_RS10395: HMPREF1058_RS10395 - hypothetical protein, at 678,934 to 679,671 _RS10395 HMPREF1058_RS10390: HMPREF1058_RS10390 - hypothetical protein, at 679,661 to 680,629 _RS10390 HMPREF1058_RS10385: HMPREF1058_RS10385 - tape measure protein, at 680,626 to 685,464 _RS10385 Position (kb) 678 679 680Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 677.934 kb on + strand, within HMPREF1058_RS10405at 677.960 kb on + strand, within HMPREF1058_RS10405at 677.961 kb on - strand, within HMPREF1058_RS10405at 677.965 kb on + strand, within HMPREF1058_RS10405at 678.008 kb on + strandat 678.082 kb on - strandat 678.089 kb on - strandat 678.092 kb on - strandat 678.092 kb on - strandat 678.101 kb on + strandat 678.102 kb on - strandat 678.107 kb on - strandat 678.125 kb on - strandat 678.156 kb on - strandat 678.169 kb on + strandat 678.177 kb on + strandat 678.180 kb on + strandat 678.180 kb on + strandat 678.181 kb on - strandat 678.268 kb on + strand, within HMPREF1058_RS10400at 678.268 kb on + strand, within HMPREF1058_RS10400at 678.351 kb on - strand, within HMPREF1058_RS10400at 678.408 kb on + strand, within HMPREF1058_RS10400at 678.409 kb on - strand, within HMPREF1058_RS10400at 678.414 kb on + strand, within HMPREF1058_RS10400at 678.446 kb on - strand, within HMPREF1058_RS10400at 678.468 kb on + strand, within HMPREF1058_RS10400at 678.543 kb on + strand, within HMPREF1058_RS10400at 678.581 kb on + strand, within HMPREF1058_RS10400at 678.652 kb on - strand, within HMPREF1058_RS10400at 678.683 kb on + strand, within HMPREF1058_RS10400at 678.759 kb on - strand, within HMPREF1058_RS10400at 678.759 kb on - strand, within HMPREF1058_RS10400at 678.821 kb on - strand, within HMPREF1058_RS10400at 678.854 kb on + strand, within HMPREF1058_RS10400at 678.854 kb on + strand, within HMPREF1058_RS10400at 678.854 kb on + strand, within HMPREF1058_RS10400at 678.854 kb on + strand, within HMPREF1058_RS10400at 678.854 kb on + strand, within HMPREF1058_RS10400at 678.857 kb on + strandat 678.858 kb on - strandat 678.860 kb on - strandat 678.860 kb on - strandat 678.910 kb on - strandat 678.915 kb on + strandat 678.981 kb on + strandat 678.991 kb on + strandat 679.087 kb on + strand, within HMPREF1058_RS10395at 679.087 kb on + strand, within HMPREF1058_RS10395at 679.088 kb on - strand, within HMPREF1058_RS10395at 679.088 kb on - strand, within HMPREF1058_RS10395at 679.153 kb on - strand, within HMPREF1058_RS10395at 679.197 kb on + strand, within HMPREF1058_RS10395at 679.263 kb on + strand, within HMPREF1058_RS10395at 679.285 kb on + strand, within HMPREF1058_RS10395at 679.295 kb on - strand, within HMPREF1058_RS10395at 679.437 kb on + strand, within HMPREF1058_RS10395at 679.535 kb on + strand, within HMPREF1058_RS10395at 679.567 kb on + strand, within HMPREF1058_RS10395at 679.610 kb on + strandat 679.610 kb on + strandat 679.671 kb on + strandat 679.671 kb on + strandat 679.672 kb on - strandat 679.672 kb on - strandat 679.690 kb on - strandat 679.712 kb on + strandat 679.762 kb on + strand, within HMPREF1058_RS10390at 679.846 kb on - strand, within HMPREF1058_RS10390at 679.849 kb on - strand, within HMPREF1058_RS10390at 679.867 kb on - strand, within HMPREF1058_RS10390at 679.867 kb on - strand, within HMPREF1058_RS10390at 679.904 kb on + strand, within HMPREF1058_RS10390at 679.905 kb on - strand, within HMPREF1058_RS10390at 680.029 kb on + strand, within HMPREF1058_RS10390at 680.037 kb on + strandat 680.038 kb on - strand, within HMPREF1058_RS10390at 680.038 kb on - strand, within HMPREF1058_RS10390at 680.058 kb on + strand, within HMPREF1058_RS10390at 680.058 kb on + strand, within HMPREF1058_RS10390at 680.059 kb on - strand, within HMPREF1058_RS10390at 680.090 kb on + strand, within HMPREF1058_RS10390at 680.091 kb on - strand, within HMPREF1058_RS10390at 680.091 kb on - strand, within HMPREF1058_RS10390at 680.120 kb on - strand, within HMPREF1058_RS10390at 680.124 kb on - strand, within HMPREF1058_RS10390at 680.175 kb on - strand, within HMPREF1058_RS10390at 680.184 kb on - strand, within HMPREF1058_RS10390at 680.200 kb on + strand, within HMPREF1058_RS10390at 680.204 kb on + strand, within HMPREF1058_RS10390at 680.204 kb on + strand, within HMPREF1058_RS10390at 680.232 kb on + strand, within HMPREF1058_RS10390at 680.233 kb on - strand, within HMPREF1058_RS10390at 680.236 kb on + strand, within HMPREF1058_RS10390at 680.295 kb on + strand, within HMPREF1058_RS10390at 680.303 kb on + strand, within HMPREF1058_RS10390at 680.310 kb on - strand, within HMPREF1058_RS10390at 680.310 kb on - strand, within HMPREF1058_RS10390at 680.332 kb on + strand, within HMPREF1058_RS10390at 680.339 kb on - strand, within HMPREF1058_RS10390at 680.365 kb on + strand, within HMPREF1058_RS10390at 680.370 kb on + strand, within HMPREF1058_RS10390at 680.416 kb on + strand, within HMPREF1058_RS10390at 680.416 kb on + strand, within HMPREF1058_RS10390at 680.416 kb on + strand, within HMPREF1058_RS10390at 680.417 kb on - strand, within HMPREF1058_RS10390at 680.417 kb on - strand, within HMPREF1058_RS10390at 680.420 kb on + strand, within HMPREF1058_RS10390at 680.421 kb on - strand, within HMPREF1058_RS10390at 680.573 kb on - strandat 680.609 kb on + strandat 680.615 kb on + strandat 680.616 kb on - strandat 680.639 kb on - strandat 680.661 kb on + strandat 680.662 kb on - strandat 680.666 kb on - strandat 680.666 kb on - strandat 680.666 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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677,934 + HMPREF1058_RS10405 0.86 -2.3
677,960 + HMPREF1058_RS10405 0.88 -2.0
677,961 - HMPREF1058_RS10405 0.88 -1.2
677,965 + HMPREF1058_RS10405 0.88 +0.0
678,008 + -2.2
678,082 - -0.1
678,089 - -0.2
678,092 - -0.4
678,092 - +0.8
678,101 + -0.3
678,102 - +1.0
678,107 - -0.0
678,125 - +0.2
678,156 - +0.6
678,169 + -0.2
678,177 + +0.2
678,180 + +0.4
678,180 + -0.2
678,181 - +1.2
678,268 + HMPREF1058_RS10400 0.13 -0.9
678,268 + HMPREF1058_RS10400 0.13 -0.3
678,351 - HMPREF1058_RS10400 0.24 +0.1
678,408 + HMPREF1058_RS10400 0.31 +0.2
678,409 - HMPREF1058_RS10400 0.31 +0.1
678,414 + HMPREF1058_RS10400 0.32 -0.1
678,446 - HMPREF1058_RS10400 0.36 -0.1
678,468 + HMPREF1058_RS10400 0.39 +0.9
678,543 + HMPREF1058_RS10400 0.49 -0.1
678,581 + HMPREF1058_RS10400 0.54 +0.1
678,652 - HMPREF1058_RS10400 0.63 +0.6
678,683 + HMPREF1058_RS10400 0.67 -0.5
678,759 - HMPREF1058_RS10400 0.77 +0.4
678,759 - HMPREF1058_RS10400 0.77 +0.1
678,821 - HMPREF1058_RS10400 0.85 +0.3
678,854 + HMPREF1058_RS10400 0.90 -1.1
678,854 + HMPREF1058_RS10400 0.90 +0.2
678,854 + HMPREF1058_RS10400 0.90 +0.2
678,854 + HMPREF1058_RS10400 0.90 +0.6
678,854 + HMPREF1058_RS10400 0.90 -0.9
678,857 + +0.2
678,858 - -0.7
678,860 - +0.9
678,860 - +0.3
678,910 - -0.0
678,915 + +1.6
678,981 + -0.4
678,991 + -0.0
679,087 + HMPREF1058_RS10395 0.21 +2.1
679,087 + HMPREF1058_RS10395 0.21 -3.1
679,088 - HMPREF1058_RS10395 0.21 +1.5
679,088 - HMPREF1058_RS10395 0.21 +1.9
679,153 - HMPREF1058_RS10395 0.30 +0.9
679,197 + HMPREF1058_RS10395 0.36 +0.9
679,263 + HMPREF1058_RS10395 0.45 -0.4
679,285 + HMPREF1058_RS10395 0.48 +0.3
679,295 - HMPREF1058_RS10395 0.49 -0.0
679,437 + HMPREF1058_RS10395 0.68 -0.4
679,535 + HMPREF1058_RS10395 0.81 +0.5
679,567 + HMPREF1058_RS10395 0.86 +0.7
679,610 + -0.6
679,610 + -0.3
679,671 + -0.2
679,671 + -0.2
679,672 - +0.3
679,672 - +0.4
679,690 - -0.3
679,712 + -0.9
679,762 + HMPREF1058_RS10390 0.10 -0.9
679,846 - HMPREF1058_RS10390 0.19 +0.5
679,849 - HMPREF1058_RS10390 0.19 +0.7
679,867 - HMPREF1058_RS10390 0.21 +1.1
679,867 - HMPREF1058_RS10390 0.21 +1.2
679,904 + HMPREF1058_RS10390 0.25 -1.1
679,905 - HMPREF1058_RS10390 0.25 +0.4
680,029 + HMPREF1058_RS10390 0.38 +0.3
680,037 + +1.6
680,038 - HMPREF1058_RS10390 0.39 -0.4
680,038 - HMPREF1058_RS10390 0.39 -0.7
680,058 + HMPREF1058_RS10390 0.41 -0.2
680,058 + HMPREF1058_RS10390 0.41 -0.3
680,059 - HMPREF1058_RS10390 0.41 +0.8
680,090 + HMPREF1058_RS10390 0.44 -0.1
680,091 - HMPREF1058_RS10390 0.44 +0.1
680,091 - HMPREF1058_RS10390 0.44 +0.3
680,120 - HMPREF1058_RS10390 0.47 +0.0
680,124 - HMPREF1058_RS10390 0.48 +0.5
680,175 - HMPREF1058_RS10390 0.53 +0.6
680,184 - HMPREF1058_RS10390 0.54 -0.2
680,200 + HMPREF1058_RS10390 0.56 +1.0
680,204 + HMPREF1058_RS10390 0.56 -2.7
680,204 + HMPREF1058_RS10390 0.56 -0.3
680,232 + HMPREF1058_RS10390 0.59 -0.6
680,233 - HMPREF1058_RS10390 0.59 +0.1
680,236 + HMPREF1058_RS10390 0.59 +0.2
680,295 + HMPREF1058_RS10390 0.65 -0.5
680,303 + HMPREF1058_RS10390 0.66 -0.4
680,310 - HMPREF1058_RS10390 0.67 +0.7
680,310 - HMPREF1058_RS10390 0.67 -3.1
680,332 + HMPREF1058_RS10390 0.69 -0.9
680,339 - HMPREF1058_RS10390 0.70 -0.4
680,365 + HMPREF1058_RS10390 0.73 -0.7
680,370 + HMPREF1058_RS10390 0.73 +1.7
680,416 + HMPREF1058_RS10390 0.78 +0.5
680,416 + HMPREF1058_RS10390 0.78 -0.7
680,416 + HMPREF1058_RS10390 0.78 -1.2
680,417 - HMPREF1058_RS10390 0.78 -0.1
680,417 - HMPREF1058_RS10390 0.78 -0.1
680,420 + HMPREF1058_RS10390 0.78 +0.0
680,421 - HMPREF1058_RS10390 0.78 +1.5
680,573 - +0.2
680,609 + +0.3
680,615 + -0.0
680,616 - +0.5
680,639 - -0.8
680,661 + -0.0
680,662 - +1.1
680,666 - -0.4
680,666 - -1.0
680,666 - -1.3

Or see this region's nucleotide sequence