Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10065 and HMPREF1058_RS10060 are separated by 105 nucleotides HMPREF1058_RS10060 and HMPREF1058_RS10055 are separated by 60 nucleotides HMPREF1058_RS10055 and HMPREF1058_RS10050 are separated by 66 nucleotides
HMPREF1058_RS10065: HMPREF1058_RS10065 - phosphoenolpyruvate carboxykinase (ATP), at 729,590 to 731,197
_RS10065
HMPREF1058_RS10060: HMPREF1058_RS10060 - nitroreductase family protein, at 731,303 to 731,953
_RS10060
HMPREF1058_RS10055: HMPREF1058_RS10055 - translational GTPase TypA, at 732,014 to 733,816
_RS10055
HMPREF1058_RS10050: HMPREF1058_RS10050 - response regulator, at 733,883 to 738,004
_RS10050
Position (kb) 732
733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 731.215 kb on + strand at 731.292 kb on + strand at 731.314 kb on + strand at 731.338 kb on + strand at 731.339 kb on - strand at 731.359 kb on + strand at 731.359 kb on + strand at 731.360 kb on - strand at 731.360 kb on - strand at 731.430 kb on + strand, within HMPREF1058_RS10060 at 731.431 kb on - strand, within HMPREF1058_RS10060 at 731.437 kb on + strand, within HMPREF1058_RS10060 at 731.438 kb on - strand, within HMPREF1058_RS10060 at 731.440 kb on + strand, within HMPREF1058_RS10060 at 731.453 kb on - strand, within HMPREF1058_RS10060 at 731.458 kb on - strand, within HMPREF1058_RS10060 at 731.465 kb on + strand, within HMPREF1058_RS10060 at 731.503 kb on + strand, within HMPREF1058_RS10060 at 731.504 kb on - strand, within HMPREF1058_RS10060 at 731.504 kb on - strand, within HMPREF1058_RS10060 at 731.504 kb on - strand, within HMPREF1058_RS10060 at 731.504 kb on - strand, within HMPREF1058_RS10060 at 731.506 kb on - strand, within HMPREF1058_RS10060 at 731.530 kb on + strand, within HMPREF1058_RS10060 at 731.530 kb on + strand, within HMPREF1058_RS10060 at 731.671 kb on + strand, within HMPREF1058_RS10060 at 731.671 kb on + strand, within HMPREF1058_RS10060 at 731.672 kb on - strand, within HMPREF1058_RS10060 at 731.684 kb on - strand, within HMPREF1058_RS10060 at 731.702 kb on + strand, within HMPREF1058_RS10060 at 731.702 kb on + strand, within HMPREF1058_RS10060 at 731.707 kb on + strand, within HMPREF1058_RS10060 at 731.707 kb on + strand, within HMPREF1058_RS10060 at 731.708 kb on - strand, within HMPREF1058_RS10060 at 731.708 kb on - strand, within HMPREF1058_RS10060 at 731.708 kb on - strand, within HMPREF1058_RS10060 at 731.708 kb on - strand, within HMPREF1058_RS10060 at 731.719 kb on - strand, within HMPREF1058_RS10060 at 731.772 kb on + strand, within HMPREF1058_RS10060 at 731.831 kb on + strand, within HMPREF1058_RS10060 at 731.831 kb on + strand, within HMPREF1058_RS10060 at 731.833 kb on + strand, within HMPREF1058_RS10060 at 731.835 kb on - strand, within HMPREF1058_RS10060 at 731.920 kb on + strand at 731.938 kb on - strand at 731.951 kb on + strand at 731.952 kb on - strand at 732.000 kb on + strand at 732.034 kb on + strand at 732.035 kb on - strand at 732.061 kb on + strand at 732.067 kb on + strand at 732.068 kb on - strand at 732.092 kb on + strand at 732.093 kb on - strand at 732.093 kb on - strand at 732.096 kb on + strand at 732.096 kb on + strand at 732.096 kb on + strand at 732.096 kb on + strand at 732.097 kb on - strand at 732.097 kb on - strand at 732.097 kb on - strand at 732.097 kb on - strand at 732.215 kb on + strand, within HMPREF1058_RS10055 at 732.215 kb on + strand, within HMPREF1058_RS10055 at 732.215 kb on + strand at 732.270 kb on + strand, within HMPREF1058_RS10055 at 732.271 kb on - strand, within HMPREF1058_RS10055 at 732.271 kb on - strand, within HMPREF1058_RS10055 at 732.273 kb on - strand, within HMPREF1058_RS10055 at 732.315 kb on - strand, within HMPREF1058_RS10055 at 732.364 kb on + strand, within HMPREF1058_RS10055 at 732.399 kb on + strand, within HMPREF1058_RS10055 at 732.399 kb on + strand, within HMPREF1058_RS10055 at 732.400 kb on - strand, within HMPREF1058_RS10055 at 732.459 kb on - strand, within HMPREF1058_RS10055 at 732.563 kb on + strand, within HMPREF1058_RS10055 at 732.588 kb on + strand, within HMPREF1058_RS10055 at 732.612 kb on - strand, within HMPREF1058_RS10055 at 732.623 kb on - strand, within HMPREF1058_RS10055 at 732.645 kb on - strand, within HMPREF1058_RS10055 at 732.853 kb on + strand, within HMPREF1058_RS10055 at 732.854 kb on - strand, within HMPREF1058_RS10055 at 732.962 kb on - strand, within HMPREF1058_RS10055 at 732.962 kb on - strand, within HMPREF1058_RS10055 at 732.962 kb on - strand, within HMPREF1058_RS10055 at 732.992 kb on + strand, within HMPREF1058_RS10055 at 732.992 kb on + strand, within HMPREF1058_RS10055 at 732.992 kb on + strand, within HMPREF1058_RS10055 at 732.995 kb on + strand, within HMPREF1058_RS10055 at 733.057 kb on + strand, within HMPREF1058_RS10055 at 733.057 kb on + strand, within HMPREF1058_RS10055 at 733.061 kb on + strand, within HMPREF1058_RS10055 at 733.062 kb on - strand, within HMPREF1058_RS10055 at 733.082 kb on + strand, within HMPREF1058_RS10055 at 733.083 kb on - strand, within HMPREF1058_RS10055 at 733.090 kb on + strand, within HMPREF1058_RS10055 at 733.115 kb on - strand, within HMPREF1058_RS10055 at 733.115 kb on - strand, within HMPREF1058_RS10055 at 733.121 kb on - strand, within HMPREF1058_RS10055 at 733.171 kb on + strand, within HMPREF1058_RS10055 at 733.171 kb on + strand, within HMPREF1058_RS10055 at 733.171 kb on + strand, within HMPREF1058_RS10055 at 733.171 kb on + strand, within HMPREF1058_RS10055 at 733.172 kb on - strand, within HMPREF1058_RS10055 at 733.172 kb on - strand, within HMPREF1058_RS10055 at 733.172 kb on - strand, within HMPREF1058_RS10055 at 733.172 kb on - strand, within HMPREF1058_RS10055 at 733.172 kb on - strand, within HMPREF1058_RS10055 at 733.174 kb on - strand, within HMPREF1058_RS10055 at 733.182 kb on + strand, within HMPREF1058_RS10055 at 733.183 kb on - strand, within HMPREF1058_RS10055 at 733.188 kb on - strand, within HMPREF1058_RS10055 at 733.301 kb on - strand, within HMPREF1058_RS10055 at 733.330 kb on - strand, within HMPREF1058_RS10055 at 733.448 kb on + strand, within HMPREF1058_RS10055 at 733.470 kb on - strand, within HMPREF1058_RS10055 at 733.484 kb on + strand, within HMPREF1058_RS10055 at 733.524 kb on - strand at 733.530 kb on - strand, within HMPREF1058_RS10055 at 733.534 kb on + strand, within HMPREF1058_RS10055 at 733.534 kb on + strand, within HMPREF1058_RS10055 at 733.534 kb on + strand, within HMPREF1058_RS10055 at 733.535 kb on - strand, within HMPREF1058_RS10055 at 733.535 kb on - strand, within HMPREF1058_RS10055 at 733.535 kb on - strand, within HMPREF1058_RS10055 at 733.630 kb on + strand, within HMPREF1058_RS10055 at 733.654 kb on + strand at 733.658 kb on + strand at 733.816 kb on + strand at 733.817 kb on - strand at 733.820 kb on - strand at 733.821 kb on + strand at 733.821 kb on + strand at 733.821 kb on + strand at 733.821 kb on + strand at 733.822 kb on - strand at 733.822 kb on - strand at 733.825 kb on + strand at 733.827 kb on + strand at 733.829 kb on + strand at 733.829 kb on + strand at 733.830 kb on - strand at 733.915 kb on + strand at 734.072 kb on + strand at 734.072 kb on + strand at 734.073 kb on - strand at 734.073 kb on - strand at 734.077 kb on + strand at 734.087 kb on - strand at 734.090 kb on + strand at 734.187 kb on - strand at 734.192 kb on - strand at 734.222 kb on + strand at 734.223 kb on - strand at 734.282 kb on + strand at 734.292 kb on + strand at 734.374 kb on + strand, within HMPREF1058_RS10050 at 734.391 kb on - strand, within HMPREF1058_RS10050 at 734.391 kb on - strand, within HMPREF1058_RS10050 at 734.411 kb on - strand, within HMPREF1058_RS10050 at 734.444 kb on - strand, within HMPREF1058_RS10050 at 734.552 kb on - strand, within HMPREF1058_RS10050 at 734.602 kb on - strand, within HMPREF1058_RS10050 at 734.615 kb on + strand, within HMPREF1058_RS10050 at 734.616 kb on - strand, within HMPREF1058_RS10050 at 734.616 kb on - strand, within HMPREF1058_RS10050 at 734.663 kb on + strand, within HMPREF1058_RS10050 at 734.747 kb on - strand, within HMPREF1058_RS10050
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 731,215 + +0.4 731,292 + +0.7 731,314 + +0.5 731,338 + -0.9 731,339 - +2.1 731,359 + -0.3 731,359 + -0.7 731,360 - -0.5 731,360 - +0.3 731,430 + HMPREF1058_RS10060 0.20 +0.1 731,431 - HMPREF1058_RS10060 0.20 -0.3 731,437 + HMPREF1058_RS10060 0.21 -1.4 731,438 - HMPREF1058_RS10060 0.21 -0.2 731,440 + HMPREF1058_RS10060 0.21 -0.1 731,453 - HMPREF1058_RS10060 0.23 -0.8 731,458 - HMPREF1058_RS10060 0.24 -0.1 731,465 + HMPREF1058_RS10060 0.25 -0.6 731,503 + HMPREF1058_RS10060 0.31 +0.5 731,504 - HMPREF1058_RS10060 0.31 -0.4 731,504 - HMPREF1058_RS10060 0.31 +0.5 731,504 - HMPREF1058_RS10060 0.31 -0.6 731,504 - HMPREF1058_RS10060 0.31 -0.5 731,506 - HMPREF1058_RS10060 0.31 +0.2 731,530 + HMPREF1058_RS10060 0.35 +0.0 731,530 + HMPREF1058_RS10060 0.35 -0.3 731,671 + HMPREF1058_RS10060 0.57 +0.2 731,671 + HMPREF1058_RS10060 0.57 +0.5 731,672 - HMPREF1058_RS10060 0.57 -0.1 731,684 - HMPREF1058_RS10060 0.59 -0.5 731,702 + HMPREF1058_RS10060 0.61 +0.9 731,702 + HMPREF1058_RS10060 0.61 +2.0 731,707 + HMPREF1058_RS10060 0.62 -0.4 731,707 + HMPREF1058_RS10060 0.62 -2.3 731,708 - HMPREF1058_RS10060 0.62 -2.8 731,708 - HMPREF1058_RS10060 0.62 +1.3 731,708 - HMPREF1058_RS10060 0.62 -0.4 731,708 - HMPREF1058_RS10060 0.62 -0.5 731,719 - HMPREF1058_RS10060 0.64 +0.5 731,772 + HMPREF1058_RS10060 0.72 +1.3 731,831 + HMPREF1058_RS10060 0.81 -0.7 731,831 + HMPREF1058_RS10060 0.81 -3.2 731,833 + HMPREF1058_RS10060 0.81 +0.3 731,835 - HMPREF1058_RS10060 0.82 -0.1 731,920 + -0.6 731,938 - +0.3 731,951 + -0.4 731,952 - +3.1 732,000 + -0.0 732,034 + +0.8 732,035 - -1.8 732,061 + +0.3 732,067 + +0.1 732,068 - +0.5 732,092 + +0.8 732,093 - +1.0 732,093 - -0.3 732,096 + +0.9 732,096 + +1.0 732,096 + +0.6 732,096 + +1.2 732,097 - +1.7 732,097 - +2.3 732,097 - +1.0 732,097 - +1.1 732,215 + HMPREF1058_RS10055 0.11 +0.7 732,215 + HMPREF1058_RS10055 0.11 +1.7 732,215 + +1.5 732,270 + HMPREF1058_RS10055 0.14 +0.8 732,271 - HMPREF1058_RS10055 0.14 +0.8 732,271 - HMPREF1058_RS10055 0.14 +1.1 732,273 - HMPREF1058_RS10055 0.14 +1.5 732,315 - HMPREF1058_RS10055 0.17 +2.2 732,364 + HMPREF1058_RS10055 0.19 +1.5 732,399 + HMPREF1058_RS10055 0.21 +0.6 732,399 + HMPREF1058_RS10055 0.21 +2.0 732,400 - HMPREF1058_RS10055 0.21 +1.0 732,459 - HMPREF1058_RS10055 0.25 +1.1 732,563 + HMPREF1058_RS10055 0.30 -0.2 732,588 + HMPREF1058_RS10055 0.32 +0.3 732,612 - HMPREF1058_RS10055 0.33 +0.5 732,623 - HMPREF1058_RS10055 0.34 +1.3 732,645 - HMPREF1058_RS10055 0.35 +0.7 732,853 + HMPREF1058_RS10055 0.47 +2.1 732,854 - HMPREF1058_RS10055 0.47 +0.3 732,962 - HMPREF1058_RS10055 0.53 +1.2 732,962 - HMPREF1058_RS10055 0.53 +1.3 732,962 - HMPREF1058_RS10055 0.53 +0.4 732,992 + HMPREF1058_RS10055 0.54 +1.7 732,992 + HMPREF1058_RS10055 0.54 +1.1 732,992 + HMPREF1058_RS10055 0.54 +0.4 732,995 + HMPREF1058_RS10055 0.54 +0.6 733,057 + HMPREF1058_RS10055 0.58 +0.6 733,057 + HMPREF1058_RS10055 0.58 +0.7 733,061 + HMPREF1058_RS10055 0.58 +1.0 733,062 - HMPREF1058_RS10055 0.58 +1.2 733,082 + HMPREF1058_RS10055 0.59 +0.2 733,083 - HMPREF1058_RS10055 0.59 +1.3 733,090 + HMPREF1058_RS10055 0.60 +1.6 733,115 - HMPREF1058_RS10055 0.61 +2.1 733,115 - HMPREF1058_RS10055 0.61 +1.8 733,121 - HMPREF1058_RS10055 0.61 +0.4 733,171 + HMPREF1058_RS10055 0.64 -1.5 733,171 + HMPREF1058_RS10055 0.64 +1.2 733,171 + HMPREF1058_RS10055 0.64 +1.0 733,171 + HMPREF1058_RS10055 0.64 +0.8 733,172 - HMPREF1058_RS10055 0.64 +1.6 733,172 - HMPREF1058_RS10055 0.64 +0.3 733,172 - HMPREF1058_RS10055 0.64 +0.8 733,172 - HMPREF1058_RS10055 0.64 +0.8 733,172 - HMPREF1058_RS10055 0.64 +1.8 733,174 - HMPREF1058_RS10055 0.64 +2.1 733,182 + HMPREF1058_RS10055 0.65 +0.4 733,183 - HMPREF1058_RS10055 0.65 +0.6 733,188 - HMPREF1058_RS10055 0.65 +0.9 733,301 - HMPREF1058_RS10055 0.71 +0.6 733,330 - HMPREF1058_RS10055 0.73 +1.2 733,448 + HMPREF1058_RS10055 0.80 +0.5 733,470 - HMPREF1058_RS10055 0.81 +1.9 733,484 + HMPREF1058_RS10055 0.82 +0.2 733,524 - +2.1 733,530 - HMPREF1058_RS10055 0.84 +3.5 733,534 + HMPREF1058_RS10055 0.84 +1.3 733,534 + HMPREF1058_RS10055 0.84 +1.6 733,534 + HMPREF1058_RS10055 0.84 +0.4 733,535 - HMPREF1058_RS10055 0.84 +0.7 733,535 - HMPREF1058_RS10055 0.84 -0.2 733,535 - HMPREF1058_RS10055 0.84 +1.3 733,630 + HMPREF1058_RS10055 0.90 +0.5 733,654 + +1.7 733,658 + -1.5 733,816 + +0.8 733,817 - -0.9 733,820 - -0.1 733,821 + +0.0 733,821 + +1.1 733,821 + +1.9 733,821 + -0.9 733,822 - -0.2 733,822 - +0.9 733,825 + +1.2 733,827 + +0.4 733,829 + +1.8 733,829 + +1.2 733,830 - +0.4 733,915 + -1.3 734,072 + -0.1 734,072 + -0.2 734,073 - +0.2 734,073 - +0.2 734,077 + +1.3 734,087 - -0.3 734,090 + +1.7 734,187 - -0.7 734,192 - +0.9 734,222 + -0.8 734,223 - -0.2 734,282 + -1.8 734,292 + -0.1 734,374 + HMPREF1058_RS10050 0.12 +0.6 734,391 - HMPREF1058_RS10050 0.12 -0.9 734,391 - HMPREF1058_RS10050 0.12 +0.2 734,411 - HMPREF1058_RS10050 0.13 -0.2 734,444 - HMPREF1058_RS10050 0.14 -1.8 734,552 - HMPREF1058_RS10050 0.16 -0.0 734,602 - HMPREF1058_RS10050 0.17 -2.5 734,615 + HMPREF1058_RS10050 0.18 +0.7 734,616 - HMPREF1058_RS10050 0.18 +0.1 734,616 - HMPREF1058_RS10050 0.18 -0.4 734,663 + HMPREF1058_RS10050 0.19 -0.6 734,747 - HMPREF1058_RS10050 0.21 -0.2
Or see this region's nucleotide sequence