Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10015 and HMPREF1058_RS10010 are separated by 17 nucleotides HMPREF1058_RS10010 and HMPREF1058_RS10005 are separated by 11 nucleotides HMPREF1058_RS10005 and HMPREF1058_RS10000 are separated by 280 nucleotides HMPREF1058_RS10000 and HMPREF1058_RS09995 are separated by 102 nucleotides
HMPREF1058_RS10015: HMPREF1058_RS10015 - DUF4906 domain-containing protein, at 746,259 to 748,373
_RS10015
HMPREF1058_RS10010: HMPREF1058_RS10010 - hypothetical protein, at 748,391 to 748,636
_RS10010
HMPREF1058_RS10005: HMPREF1058_RS10005 - hypothetical protein, at 748,648 to 748,947
_RS10005
HMPREF1058_RS10000: HMPREF1058_RS10000 - 30S ribosomal protein S15, at 749,228 to 749,497
_RS10000
HMPREF1058_RS09995: HMPREF1058_RS09995 - S-ribosylhomocysteine lyase, at 749,600 to 750,085
_RS09995
Position (kb) 748
749 Strain fitness (log2 ratio) -2
-1
0
1 at 747.531 kb on + strand, within HMPREF1058_RS10015 at 747.532 kb on - strand, within HMPREF1058_RS10015 at 747.534 kb on - strand, within HMPREF1058_RS10015 at 747.631 kb on - strand, within HMPREF1058_RS10015 at 747.631 kb on - strand, within HMPREF1058_RS10015 at 747.654 kb on - strand, within HMPREF1058_RS10015 at 747.675 kb on + strand, within HMPREF1058_RS10015 at 747.676 kb on - strand, within HMPREF1058_RS10015 at 747.685 kb on - strand, within HMPREF1058_RS10015 at 747.695 kb on - strand, within HMPREF1058_RS10015 at 747.719 kb on + strand, within HMPREF1058_RS10015 at 747.719 kb on + strand, within HMPREF1058_RS10015 at 747.720 kb on - strand, within HMPREF1058_RS10015 at 747.803 kb on + strand, within HMPREF1058_RS10015 at 747.808 kb on - strand, within HMPREF1058_RS10015 at 747.906 kb on + strand, within HMPREF1058_RS10015 at 747.906 kb on + strand, within HMPREF1058_RS10015 at 747.906 kb on + strand, within HMPREF1058_RS10015 at 747.907 kb on - strand, within HMPREF1058_RS10015 at 747.907 kb on - strand, within HMPREF1058_RS10015 at 748.008 kb on + strand, within HMPREF1058_RS10015 at 748.010 kb on + strand, within HMPREF1058_RS10015 at 748.033 kb on - strand, within HMPREF1058_RS10015 at 748.132 kb on - strand, within HMPREF1058_RS10015 at 748.132 kb on - strand, within HMPREF1058_RS10015 at 748.184 kb on - strand at 748.184 kb on - strand at 748.211 kb on + strand at 748.211 kb on + strand at 748.211 kb on + strand at 748.212 kb on - strand at 748.251 kb on - strand at 748.278 kb on + strand at 748.280 kb on + strand at 748.281 kb on - strand at 748.281 kb on - strand at 748.352 kb on + strand at 748.353 kb on - strand at 748.355 kb on + strand at 748.355 kb on + strand at 748.356 kb on - strand at 748.365 kb on + strand at 748.372 kb on - strand at 748.376 kb on - strand at 748.432 kb on + strand, within HMPREF1058_RS10010 at 748.535 kb on - strand, within HMPREF1058_RS10010 at 748.618 kb on - strand at 748.658 kb on + strand at 748.661 kb on + strand at 748.701 kb on - strand, within HMPREF1058_RS10005 at 748.702 kb on + strand, within HMPREF1058_RS10005 at 748.704 kb on + strand, within HMPREF1058_RS10005 at 748.704 kb on + strand, within HMPREF1058_RS10005 at 748.704 kb on + strand at 748.705 kb on - strand, within HMPREF1058_RS10005 at 748.738 kb on + strand, within HMPREF1058_RS10005 at 748.739 kb on - strand, within HMPREF1058_RS10005 at 748.842 kb on - strand, within HMPREF1058_RS10005 at 748.842 kb on - strand, within HMPREF1058_RS10005 at 748.893 kb on - strand, within HMPREF1058_RS10005 at 748.952 kb on - strand at 749.089 kb on + strand at 749.560 kb on - strand at 749.572 kb on + strand at 749.611 kb on + strand at 749.616 kb on + strand at 749.617 kb on - strand at 749.619 kb on + strand at 749.620 kb on - strand at 749.620 kb on - strand at 749.620 kb on - strand at 749.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 747,531 + HMPREF1058_RS10015 0.60 -0.4 747,532 - HMPREF1058_RS10015 0.60 -0.8 747,534 - HMPREF1058_RS10015 0.60 +0.0 747,631 - HMPREF1058_RS10015 0.65 -0.4 747,631 - HMPREF1058_RS10015 0.65 +1.3 747,654 - HMPREF1058_RS10015 0.66 -0.3 747,675 + HMPREF1058_RS10015 0.67 -0.7 747,676 - HMPREF1058_RS10015 0.67 -0.1 747,685 - HMPREF1058_RS10015 0.67 -0.1 747,695 - HMPREF1058_RS10015 0.68 +0.3 747,719 + HMPREF1058_RS10015 0.69 -0.1 747,719 + HMPREF1058_RS10015 0.69 -0.6 747,720 - HMPREF1058_RS10015 0.69 +1.6 747,803 + HMPREF1058_RS10015 0.73 +0.2 747,808 - HMPREF1058_RS10015 0.73 -0.8 747,906 + HMPREF1058_RS10015 0.78 +1.4 747,906 + HMPREF1058_RS10015 0.78 +0.6 747,906 + HMPREF1058_RS10015 0.78 +0.1 747,907 - HMPREF1058_RS10015 0.78 -0.4 747,907 - HMPREF1058_RS10015 0.78 +0.2 748,008 + HMPREF1058_RS10015 0.83 +0.2 748,010 + HMPREF1058_RS10015 0.83 +0.3 748,033 - HMPREF1058_RS10015 0.84 -2.5 748,132 - HMPREF1058_RS10015 0.89 +0.2 748,132 - HMPREF1058_RS10015 0.89 -0.5 748,184 - +0.4 748,184 - -1.7 748,211 + +0.3 748,211 + -0.2 748,211 + -2.0 748,212 - -0.6 748,251 - -0.5 748,278 + +0.3 748,280 + -0.2 748,281 - -0.8 748,281 - -0.7 748,352 + -0.9 748,353 - -0.3 748,355 + -0.2 748,355 + -1.0 748,356 - -0.6 748,365 + -0.1 748,372 - -0.4 748,376 - -0.8 748,432 + HMPREF1058_RS10010 0.17 +0.2 748,535 - HMPREF1058_RS10010 0.59 +1.5 748,618 - -0.4 748,658 + +0.4 748,661 + -0.8 748,701 - HMPREF1058_RS10005 0.18 -2.7 748,702 + HMPREF1058_RS10005 0.18 +1.3 748,704 + HMPREF1058_RS10005 0.19 -0.2 748,704 + HMPREF1058_RS10005 0.19 +1.2 748,704 + +1.5 748,705 - HMPREF1058_RS10005 0.19 -0.2 748,738 + HMPREF1058_RS10005 0.30 -0.5 748,739 - HMPREF1058_RS10005 0.30 +1.2 748,842 - HMPREF1058_RS10005 0.65 -0.7 748,842 - HMPREF1058_RS10005 0.65 +1.1 748,893 - HMPREF1058_RS10005 0.82 +1.7 748,952 - -0.4 749,089 + +0.6 749,560 - -0.1 749,572 + +0.5 749,611 + +0.8 749,616 + +0.4 749,617 - -0.0 749,619 + +0.5 749,620 - +0.2 749,620 - +0.2 749,620 - -1.2 749,620 - +0.3
Or see this region's nucleotide sequence