Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09930 and HMPREF1058_RS09925 are separated by 8 nucleotides HMPREF1058_RS09925 and HMPREF1058_RS09920 are separated by 2 nucleotides HMPREF1058_RS09920 and HMPREF1058_RS09915 are separated by 46 nucleotides
HMPREF1058_RS09930: HMPREF1058_RS09930 - toprim domain-containing protein, at 758,304 to 759,179
_RS09930
HMPREF1058_RS09925: HMPREF1058_RS09925 - conjugal transfer protein TraO, at 759,188 to 759,763
_RS09925
HMPREF1058_RS09920: HMPREF1058_RS09920 - conjugative transposon protein TraN, at 759,766 to 760,752
_RS09920
HMPREF1058_RS09915: HMPREF1058_RS09915 - conjugative transposon protein TraM, at 760,799 to 762,175
_RS09915
Position (kb) 759
760
761 Strain fitness (log2 ratio) -2
-1
0
1 at 758.805 kb on + strand, within HMPREF1058_RS09930 at 759.077 kb on - strand, within HMPREF1058_RS09930 at 759.145 kb on - strand at 759.145 kb on - strand at 759.162 kb on + strand at 759.304 kb on - strand, within HMPREF1058_RS09925 at 759.336 kb on + strand, within HMPREF1058_RS09925 at 759.529 kb on - strand, within HMPREF1058_RS09925 at 760.040 kb on + strand, within HMPREF1058_RS09920 at 760.041 kb on - strand, within HMPREF1058_RS09920 at 760.091 kb on + strand, within HMPREF1058_RS09920 at 760.113 kb on - strand, within HMPREF1058_RS09920 at 760.248 kb on - strand, within HMPREF1058_RS09920 at 760.341 kb on - strand, within HMPREF1058_RS09920 at 760.381 kb on + strand, within HMPREF1058_RS09920 at 760.741 kb on + strand at 760.753 kb on + strand at 761.030 kb on + strand, within HMPREF1058_RS09915 at 761.055 kb on + strand, within HMPREF1058_RS09915 at 761.253 kb on + strand, within HMPREF1058_RS09915 at 761.253 kb on + strand, within HMPREF1058_RS09915
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 758,805 + HMPREF1058_RS09930 0.57 +0.0 759,077 - HMPREF1058_RS09930 0.88 +1.0 759,145 - -2.5 759,145 - +0.8 759,162 + -1.1 759,304 - HMPREF1058_RS09925 0.20 -2.4 759,336 + HMPREF1058_RS09925 0.26 -1.8 759,529 - HMPREF1058_RS09925 0.59 -2.5 760,040 + HMPREF1058_RS09920 0.28 +1.0 760,041 - HMPREF1058_RS09920 0.28 -0.9 760,091 + HMPREF1058_RS09920 0.33 +0.4 760,113 - HMPREF1058_RS09920 0.35 +1.1 760,248 - HMPREF1058_RS09920 0.49 +0.7 760,341 - HMPREF1058_RS09920 0.58 +0.5 760,381 + HMPREF1058_RS09920 0.62 +0.5 760,741 + +0.5 760,753 + -1.1 761,030 + HMPREF1058_RS09915 0.17 -0.3 761,055 + HMPREF1058_RS09915 0.19 +1.3 761,253 + HMPREF1058_RS09915 0.33 +0.2 761,253 + HMPREF1058_RS09915 0.33 +0.5
Or see this region's nucleotide sequence