Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09800 and HMPREF1058_RS09795 overlap by 11 nucleotides HMPREF1058_RS09795 and HMPREF1058_RS09790 are separated by 162 nucleotides HMPREF1058_RS09790 and HMPREF1058_RS09785 are separated by 60 nucleotides
HMPREF1058_RS09800: HMPREF1058_RS09800 - N-6 DNA methylase, at 788,288 to 794,104
_RS09800
HMPREF1058_RS09795: HMPREF1058_RS09795 - DUF1896 domain-containing protein, at 794,094 to 794,546
_RS09795
HMPREF1058_RS09790: HMPREF1058_RS09790 - type IA DNA topoisomerase, at 794,709 to 796,796
_RS09790
HMPREF1058_RS09785: HMPREF1058_RS09785 - DUF3945 domain-containing protein, at 796,857 to 798,428
_RS09785
Position (kb) 794
795
796
797 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 793.720 kb on + strand at 794.321 kb on - strand, within HMPREF1058_RS09795 at 794.401 kb on + strand, within HMPREF1058_RS09795 at 794.402 kb on - strand, within HMPREF1058_RS09795 at 794.434 kb on - strand, within HMPREF1058_RS09795 at 794.649 kb on - strand at 794.649 kb on - strand at 794.772 kb on - strand at 794.773 kb on + strand at 794.773 kb on + strand at 794.774 kb on - strand at 794.774 kb on - strand at 794.846 kb on + strand at 795.065 kb on - strand, within HMPREF1058_RS09790 at 795.242 kb on - strand, within HMPREF1058_RS09790 at 795.471 kb on - strand, within HMPREF1058_RS09790 at 795.493 kb on + strand, within HMPREF1058_RS09790 at 795.641 kb on + strand, within HMPREF1058_RS09790 at 796.037 kb on + strand, within HMPREF1058_RS09790 at 796.037 kb on + strand, within HMPREF1058_RS09790 at 796.037 kb on + strand, within HMPREF1058_RS09790 at 796.039 kb on + strand, within HMPREF1058_RS09790 at 796.040 kb on - strand, within HMPREF1058_RS09790 at 796.040 kb on - strand, within HMPREF1058_RS09790 at 796.182 kb on + strand, within HMPREF1058_RS09790 at 796.182 kb on + strand, within HMPREF1058_RS09790 at 796.183 kb on - strand, within HMPREF1058_RS09790 at 796.222 kb on + strand, within HMPREF1058_RS09790 at 796.424 kb on - strand, within HMPREF1058_RS09790 at 796.445 kb on + strand, within HMPREF1058_RS09790 at 796.485 kb on - strand, within HMPREF1058_RS09790 at 796.552 kb on + strand, within HMPREF1058_RS09790 at 796.552 kb on + strand, within HMPREF1058_RS09790 at 797.104 kb on + strand, within HMPREF1058_RS09785 at 797.701 kb on + strand, within HMPREF1058_RS09785
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 793,720 + +0.3 794,321 - HMPREF1058_RS09795 0.50 +0.1 794,401 + HMPREF1058_RS09795 0.68 -0.9 794,402 - HMPREF1058_RS09795 0.68 -0.1 794,434 - HMPREF1058_RS09795 0.75 +0.4 794,649 - -0.3 794,649 - -0.0 794,772 - +2.8 794,773 + +0.5 794,773 + +0.2 794,774 - +0.1 794,774 - +3.3 794,846 + +1.4 795,065 - HMPREF1058_RS09790 0.17 +4.0 795,242 - HMPREF1058_RS09790 0.26 +2.1 795,471 - HMPREF1058_RS09790 0.36 +4.2 795,493 + HMPREF1058_RS09790 0.38 +1.2 795,641 + HMPREF1058_RS09790 0.45 +0.2 796,037 + HMPREF1058_RS09790 0.64 +0.5 796,037 + HMPREF1058_RS09790 0.64 -0.4 796,037 + HMPREF1058_RS09790 0.64 -1.1 796,039 + HMPREF1058_RS09790 0.64 +0.7 796,040 - HMPREF1058_RS09790 0.64 +1.3 796,040 - HMPREF1058_RS09790 0.64 +1.3 796,182 + HMPREF1058_RS09790 0.71 -0.5 796,182 + HMPREF1058_RS09790 0.71 -0.0 796,183 - HMPREF1058_RS09790 0.71 +0.2 796,222 + HMPREF1058_RS09790 0.72 +0.0 796,424 - HMPREF1058_RS09790 0.82 +0.2 796,445 + HMPREF1058_RS09790 0.83 -0.3 796,485 - HMPREF1058_RS09790 0.85 +0.2 796,552 + HMPREF1058_RS09790 0.88 -0.8 796,552 + HMPREF1058_RS09790 0.88 -1.0 797,104 + HMPREF1058_RS09785 0.16 -0.1 797,701 + HMPREF1058_RS09785 0.54 -0.7
Or see this region's nucleotide sequence