Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09670 and HMPREF1058_RS09665 are separated by 15 nucleotides HMPREF1058_RS09665 and HMPREF1058_RS09660 are separated by 73 nucleotides HMPREF1058_RS09660 and HMPREF1058_RS09655 are separated by 9 nucleotides
HMPREF1058_RS09670: HMPREF1058_RS09670 - pyruvate kinase, at 824,426 to 825,889
_RS09670
HMPREF1058_RS09665: HMPREF1058_RS09665 - class I SAM-dependent methyltransferase, at 825,905 to 826,543
_RS09665
HMPREF1058_RS09660: HMPREF1058_RS09660 - 30S ribosome-binding factor RbfA, at 826,617 to 826,952
_RS09660
HMPREF1058_RS09655: HMPREF1058_RS09655 - ABC transporter permease, at 826,962 to 828,200
_RS09655
Position (kb) 825
826
827 Strain fitness (log2 ratio) -2
-1
0
1
2 at 825.217 kb on + strand at 825.710 kb on + strand, within HMPREF1058_RS09670 at 825.845 kb on + strand at 825.846 kb on - strand at 825.857 kb on + strand at 825.857 kb on + strand at 825.858 kb on - strand at 825.887 kb on + strand at 825.887 kb on + strand at 825.888 kb on - strand at 825.888 kb on - strand at 825.891 kb on - strand at 825.891 kb on - strand at 825.893 kb on + strand at 825.893 kb on + strand at 825.932 kb on + strand at 825.934 kb on + strand at 825.965 kb on + strand at 826.042 kb on + strand, within HMPREF1058_RS09665 at 826.042 kb on + strand, within HMPREF1058_RS09665 at 826.100 kb on + strand, within HMPREF1058_RS09665 at 826.100 kb on + strand, within HMPREF1058_RS09665 at 826.101 kb on - strand, within HMPREF1058_RS09665 at 826.170 kb on + strand, within HMPREF1058_RS09665 at 826.193 kb on - strand, within HMPREF1058_RS09665 at 826.241 kb on + strand, within HMPREF1058_RS09665 at 826.242 kb on - strand, within HMPREF1058_RS09665 at 826.322 kb on + strand, within HMPREF1058_RS09665 at 826.323 kb on + strand, within HMPREF1058_RS09665 at 826.356 kb on + strand, within HMPREF1058_RS09665 at 826.407 kb on + strand, within HMPREF1058_RS09665 at 826.556 kb on + strand at 826.556 kb on + strand at 826.566 kb on + strand at 826.566 kb on + strand at 826.612 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 825,217 + +0.1 825,710 + HMPREF1058_RS09670 0.88 +0.4 825,845 + +0.1 825,846 - -0.5 825,857 + +1.0 825,857 + +0.0 825,858 - -1.8 825,887 + -0.8 825,887 + +0.8 825,888 - +0.3 825,888 - +0.4 825,891 - +0.8 825,891 - -0.3 825,893 + +1.0 825,893 + +0.0 825,932 + +0.9 825,934 + -0.6 825,965 + +0.3 826,042 + HMPREF1058_RS09665 0.21 +0.4 826,042 + HMPREF1058_RS09665 0.21 -0.2 826,100 + HMPREF1058_RS09665 0.31 +0.2 826,100 + HMPREF1058_RS09665 0.31 +0.4 826,101 - HMPREF1058_RS09665 0.31 +0.8 826,170 + HMPREF1058_RS09665 0.41 +2.1 826,193 - HMPREF1058_RS09665 0.45 -0.3 826,241 + HMPREF1058_RS09665 0.53 -0.2 826,242 - HMPREF1058_RS09665 0.53 +0.8 826,322 + HMPREF1058_RS09665 0.65 +0.9 826,323 + HMPREF1058_RS09665 0.65 +0.7 826,356 + HMPREF1058_RS09665 0.71 +1.5 826,407 + HMPREF1058_RS09665 0.79 +1.1 826,556 + +1.2 826,556 + +0.8 826,566 + +0.5 826,566 + +0.3 826,612 + +0.3
Or see this region's nucleotide sequence