Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08940

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS08945 and HMPREF1058_RS08940 overlap by 4 nucleotidesHMPREF1058_RS08940 and HMPREF1058_RS08935 are separated by 54 nucleotides HMPREF1058_RS08945: HMPREF1058_RS08945 - FecR domain-containing protein, at 985,353 to 986,363 _RS08945 HMPREF1058_RS08940: HMPREF1058_RS08940 - RNA polymerase sigma-70 factor, at 986,360 to 986,887 _RS08940 HMPREF1058_RS08935: HMPREF1058_RS08935 - outer membrane beta-barrel protein, at 986,942 to 989,509 _RS08935 Position (kb) 986 987Strain fitness (log2 ratio) -2 -1 0 1 2at 985.480 kb on + strand, within HMPREF1058_RS08945at 985.480 kb on + strand, within HMPREF1058_RS08945at 985.515 kb on + strand, within HMPREF1058_RS08945at 985.542 kb on + strand, within HMPREF1058_RS08945at 985.543 kb on - strand, within HMPREF1058_RS08945at 985.545 kb on - strand, within HMPREF1058_RS08945at 985.652 kb on + strand, within HMPREF1058_RS08945at 985.707 kb on - strand, within HMPREF1058_RS08945at 985.713 kb on + strand, within HMPREF1058_RS08945at 985.763 kb on - strand, within HMPREF1058_RS08945at 985.821 kb on + strand, within HMPREF1058_RS08945at 985.821 kb on + strand, within HMPREF1058_RS08945at 985.822 kb on - strand, within HMPREF1058_RS08945at 985.822 kb on - strand, within HMPREF1058_RS08945at 985.822 kb on - strand, within HMPREF1058_RS08945at 985.822 kb on - strand, within HMPREF1058_RS08945at 985.892 kb on + strand, within HMPREF1058_RS08945at 985.942 kb on - strand, within HMPREF1058_RS08945at 985.942 kb on - strand, within HMPREF1058_RS08945at 985.960 kb on - strand, within HMPREF1058_RS08945at 985.973 kb on + strand, within HMPREF1058_RS08945at 985.995 kb on + strand, within HMPREF1058_RS08945at 985.996 kb on - strand, within HMPREF1058_RS08945at 986.027 kb on + strand, within HMPREF1058_RS08945at 986.101 kb on - strand, within HMPREF1058_RS08945at 986.157 kb on - strand, within HMPREF1058_RS08945at 986.419 kb on + strand, within HMPREF1058_RS08940at 986.419 kb on + strand, within HMPREF1058_RS08940at 986.419 kb on + strand, within HMPREF1058_RS08940at 986.473 kb on - strand, within HMPREF1058_RS08940at 986.760 kb on - strand, within HMPREF1058_RS08940at 986.876 kb on + strandat 986.914 kb on + strandat 986.985 kb on + strandat 986.985 kb on + strandat 986.985 kb on + strandat 986.986 kb on - strandat 987.010 kb on + strandat 987.066 kb on + strandat 987.067 kb on - strandat 987.075 kb on - strandat 987.115 kb on + strandat 987.115 kb on + strandat 987.116 kb on - strandat 987.294 kb on + strand, within HMPREF1058_RS08935at 987.334 kb on + strand, within HMPREF1058_RS08935at 987.335 kb on - strand, within HMPREF1058_RS08935at 987.479 kb on - strand, within HMPREF1058_RS08935at 987.496 kb on + strand, within HMPREF1058_RS08935at 987.500 kb on + strand, within HMPREF1058_RS08935at 987.500 kb on + strand, within HMPREF1058_RS08935at 987.500 kb on + strand, within HMPREF1058_RS08935at 987.501 kb on - strand, within HMPREF1058_RS08935at 987.510 kb on + strand, within HMPREF1058_RS08935at 987.510 kb on + strand, within HMPREF1058_RS08935at 987.510 kb on + strand, within HMPREF1058_RS08935at 987.510 kb on + strand, within HMPREF1058_RS08935at 987.511 kb on - strand, within HMPREF1058_RS08935at 987.511 kb on - strand, within HMPREF1058_RS08935at 987.514 kb on + strand, within HMPREF1058_RS08935at 987.535 kb on - strand, within HMPREF1058_RS08935at 987.535 kb on - strand, within HMPREF1058_RS08935at 987.660 kb on - strand, within HMPREF1058_RS08935at 987.664 kb on + strand, within HMPREF1058_RS08935at 987.748 kb on + strand, within HMPREF1058_RS08935at 987.749 kb on - strand, within HMPREF1058_RS08935at 987.758 kb on - strand, within HMPREF1058_RS08935at 987.759 kb on + strand, within HMPREF1058_RS08935at 987.760 kb on - strand, within HMPREF1058_RS08935at 987.760 kb on - strand, within HMPREF1058_RS08935at 987.760 kb on - strand, within HMPREF1058_RS08935at 987.802 kb on - strand, within HMPREF1058_RS08935at 987.827 kb on + strand, within HMPREF1058_RS08935at 987.868 kb on - strand, within HMPREF1058_RS08935at 987.885 kb on + strand, within HMPREF1058_RS08935at 987.887 kb on + strand, within HMPREF1058_RS08935at 987.887 kb on + strand, within HMPREF1058_RS08935

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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985,480 + HMPREF1058_RS08945 0.13 -2.7
985,480 + HMPREF1058_RS08945 0.13 -1.9
985,515 + HMPREF1058_RS08945 0.16 -2.5
985,542 + HMPREF1058_RS08945 0.19 -1.0
985,543 - HMPREF1058_RS08945 0.19 -0.2
985,545 - HMPREF1058_RS08945 0.19 -2.0
985,652 + HMPREF1058_RS08945 0.30 -1.1
985,707 - HMPREF1058_RS08945 0.35 -2.0
985,713 + HMPREF1058_RS08945 0.36 +0.0
985,763 - HMPREF1058_RS08945 0.41 -1.5
985,821 + HMPREF1058_RS08945 0.46 -1.2
985,821 + HMPREF1058_RS08945 0.46 -0.8
985,822 - HMPREF1058_RS08945 0.46 -0.6
985,822 - HMPREF1058_RS08945 0.46 +0.7
985,822 - HMPREF1058_RS08945 0.46 -0.3
985,822 - HMPREF1058_RS08945 0.46 -0.8
985,892 + HMPREF1058_RS08945 0.53 -2.2
985,942 - HMPREF1058_RS08945 0.58 -0.8
985,942 - HMPREF1058_RS08945 0.58 -0.9
985,960 - HMPREF1058_RS08945 0.60 +0.2
985,973 + HMPREF1058_RS08945 0.61 -0.7
985,995 + HMPREF1058_RS08945 0.64 -1.1
985,996 - HMPREF1058_RS08945 0.64 -0.8
986,027 + HMPREF1058_RS08945 0.67 -0.9
986,101 - HMPREF1058_RS08945 0.74 -0.8
986,157 - HMPREF1058_RS08945 0.80 -0.7
986,419 + HMPREF1058_RS08940 0.11 +0.8
986,419 + HMPREF1058_RS08940 0.11 -0.3
986,419 + HMPREF1058_RS08940 0.11 +2.2
986,473 - HMPREF1058_RS08940 0.21 -0.1
986,760 - HMPREF1058_RS08940 0.76 +0.6
986,876 + +1.3
986,914 + +0.2
986,985 + -1.0
986,985 + -0.1
986,985 + +0.1
986,986 - -0.1
987,010 + -0.8
987,066 + -1.1
987,067 - +0.1
987,075 - +2.1
987,115 + +0.7
987,115 + -0.7
987,116 - +1.0
987,294 + HMPREF1058_RS08935 0.14 -0.8
987,334 + HMPREF1058_RS08935 0.15 +0.1
987,335 - HMPREF1058_RS08935 0.15 +0.7
987,479 - HMPREF1058_RS08935 0.21 -0.4
987,496 + HMPREF1058_RS08935 0.22 +0.7
987,500 + HMPREF1058_RS08935 0.22 -0.3
987,500 + HMPREF1058_RS08935 0.22 -0.2
987,500 + HMPREF1058_RS08935 0.22 -0.5
987,501 - HMPREF1058_RS08935 0.22 +0.7
987,510 + HMPREF1058_RS08935 0.22 +0.4
987,510 + HMPREF1058_RS08935 0.22 -0.3
987,510 + HMPREF1058_RS08935 0.22 +0.4
987,510 + HMPREF1058_RS08935 0.22 +0.9
987,511 - HMPREF1058_RS08935 0.22 -0.4
987,511 - HMPREF1058_RS08935 0.22 -2.1
987,514 + HMPREF1058_RS08935 0.22 +1.0
987,535 - HMPREF1058_RS08935 0.23 +1.0
987,535 - HMPREF1058_RS08935 0.23 +0.0
987,660 - HMPREF1058_RS08935 0.28 +0.0
987,664 + HMPREF1058_RS08935 0.28 +0.7
987,748 + HMPREF1058_RS08935 0.31 +0.3
987,749 - HMPREF1058_RS08935 0.31 +0.9
987,758 - HMPREF1058_RS08935 0.32 -1.2
987,759 + HMPREF1058_RS08935 0.32 -0.3
987,760 - HMPREF1058_RS08935 0.32 +0.1
987,760 - HMPREF1058_RS08935 0.32 +0.1
987,760 - HMPREF1058_RS08935 0.32 +0.5
987,802 - HMPREF1058_RS08935 0.33 -1.2
987,827 + HMPREF1058_RS08935 0.34 -0.5
987,868 - HMPREF1058_RS08935 0.36 -0.2
987,885 + HMPREF1058_RS08935 0.37 +1.3
987,887 + HMPREF1058_RS08935 0.37 -0.3
987,887 + HMPREF1058_RS08935 0.37 +0.8

Or see this region's nucleotide sequence