Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08565

Experiment: Beta-Lactose 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Beta-Lactose 10 mM (C)
1,107,452	-		HMPREF1058_RS08570	0.59	+0.9
1,107,452	-		HMPREF1058_RS08570	0.59	-1.8
1,107,454	+		HMPREF1058_RS08570	0.59	+1.7
1,107,468	+		HMPREF1058_RS08570	0.59	+1.7
1,107,468	+		HMPREF1058_RS08570	0.59	+1.7
1,107,468	+		HMPREF1058_RS08570	0.59	+0.6
1,107,468	+		HMPREF1058_RS08570	0.59	+0.9
1,107,468	+		HMPREF1058_RS08570	0.59	-2.5
1,107,469	-		HMPREF1058_RS08570	0.59	-2.1
1,107,470	+		HMPREF1058_RS08570	0.59	-0.1
1,107,471	-		HMPREF1058_RS08570	0.59	+0.3
1,107,472	+		HMPREF1058_RS08570	0.59	-1.2
1,107,472	+		HMPREF1058_RS08570	0.59	-0.2
1,107,473	-		HMPREF1058_RS08570	0.59	-0.8
1,107,473	-		HMPREF1058_RS08570	0.59	+0.1
1,107,477	-		HMPREF1058_RS08570	0.60	-0.4
1,107,511	-		HMPREF1058_RS08570	0.61	-0.8
1,107,542	-		HMPREF1058_RS08570	0.62	-0.6
1,107,542	-		HMPREF1058_RS08570	0.62	-0.5
1,107,725	+		HMPREF1058_RS08570	0.70	+1.4
1,107,725	+		HMPREF1058_RS08570	0.70	+0.4
1,107,725	+		HMPREF1058_RS08570	0.70	+1.9
1,107,728	-		HMPREF1058_RS08570	0.70	-0.0
1,107,732	+		HMPREF1058_RS08570	0.71	+1.5
1,107,733	-		HMPREF1058_RS08570	0.71	+0.1
1,107,740	-		HMPREF1058_RS08570	0.71	-0.2
1,107,854	-		HMPREF1058_RS08570	0.76	-0.0
1,107,887	-		HMPREF1058_RS08570	0.77	-0.2
1,107,895	+		HMPREF1058_RS08570	0.78	+0.5
1,107,903	-		HMPREF1058_RS08570	0.78	+0.9
1,107,903	-		HMPREF1058_RS08570	0.78	-1.3
1,108,005	+		HMPREF1058_RS08570	0.82	+1.4
1,108,009	-		HMPREF1058_RS08570	0.83	+0.3
1,108,016	-		HMPREF1058_RS08570	0.83	+0.4
1,108,018	-		HMPREF1058_RS08570	0.83	-0.4
1,108,122	+		HMPREF1058_RS08570	0.87	+2.0
1,108,175	-		HMPREF1058_RS08570	0.90	-0.8
1,108,213	+				+0.8
1,108,218	+				+0.8
1,108,282	-				-0.7
1,108,311	-				+0.5
1,108,322	-				-0.9
1,108,413	+				-1.1
1,108,417	+				+2.1
1,108,418	-				-0.6
1,108,419	+				-0.1
1,108,419	+				-0.5
1,108,420	-				-1.0
1,108,429	-				+0.3
1,108,434	-				-0.6
1,108,434	-				+0.5
1,108,437	-				-1.2
1,108,536	+				-0.3
1,108,540	+				-0.0
1,108,541	-				-1.4
1,108,604	-				+0.5
1,108,604	-				-0.1
1,108,688	-				+0.9
1,108,752	+		HMPREF1058_RS08565	0.11	+0.7
1,108,752	+		HMPREF1058_RS08565	0.11	-2.1
1,108,756	+		HMPREF1058_RS08565	0.11	+0.6
1,108,757	-		HMPREF1058_RS08565	0.11	-0.5
1,108,828	-		HMPREF1058_RS08565	0.13	+1.1
1,108,850	-		HMPREF1058_RS08565	0.14	-0.5
1,108,857	+		HMPREF1058_RS08565	0.14	-0.2
1,108,930	+		HMPREF1058_RS08565	0.17	+1.7
1,108,932	+		HMPREF1058_RS08565	0.17	+0.3
1,108,932	+		HMPREF1058_RS08565	0.17	-0.5
1,109,066	-		HMPREF1058_RS08565	0.21	-0.5
1,109,133	+		HMPREF1058_RS08565	0.23	-0.3
1,109,142	+		HMPREF1058_RS08565	0.24	-1.2
1,109,143	-		HMPREF1058_RS08565	0.24	-0.4
1,109,143	-		HMPREF1058_RS08565	0.24	-0.6
1,109,144	+		HMPREF1058_RS08565	0.24	-0.8
1,109,152	+		HMPREF1058_RS08565	0.24	-1.5
1,109,188	-		HMPREF1058_RS08565	0.25	-0.0
1,109,188	-		HMPREF1058_RS08565	0.25	+0.3
1,109,269	-		HMPREF1058_RS08565	0.28	-0.3
1,109,305	-		HMPREF1058_RS08565	0.29	-0.8
1,109,398	-		HMPREF1058_RS08565	0.32	-0.5
1,109,422	-		HMPREF1058_RS08565	0.33	-0.9
1,109,423	+		HMPREF1058_RS08565	0.33	-0.9
1,109,459	+		HMPREF1058_RS08565	0.34	-0.7
1,109,568	-		HMPREF1058_RS08565	0.38	-1.7
1,109,662	+		HMPREF1058_RS08565	0.41	-0.4
1,109,689	+		HMPREF1058_RS08565	0.41	-1.5
1,109,690	-		HMPREF1058_RS08565	0.42	+0.5
1,109,692	-		HMPREF1058_RS08565	0.42	-1.1
1,109,706	+		HMPREF1058_RS08565	0.42	+0.2
1,109,707	-		HMPREF1058_RS08565	0.42	+4.1
1,109,709	+		HMPREF1058_RS08565	0.42	-0.4
1,109,796	+		HMPREF1058_RS08565	0.45	-1.4
1,109,797	-		HMPREF1058_RS08565	0.45	-0.5
1,109,797	-		HMPREF1058_RS08565	0.45	+0.4
1,109,801	-		HMPREF1058_RS08565	0.45	-0.1
1,109,868	+		HMPREF1058_RS08565	0.47	-0.2
1,109,880	+		HMPREF1058_RS08565	0.48	+0.4
1,109,881	-		HMPREF1058_RS08565	0.48	-0.8
1,109,885	-		HMPREF1058_RS08565	0.48	-1.5
1,109,927	-		HMPREF1058_RS08565	0.49	-0.6
1,109,947	+		HMPREF1058_RS08565	0.50	+0.2
1,109,962	+		HMPREF1058_RS08565	0.50	+1.0
1,109,963	-		HMPREF1058_RS08565	0.50	-0.5
1,110,021	+		HMPREF1058_RS08565	0.52	-0.6
1,110,029	-		HMPREF1058_RS08565	0.53	-1.1
1,110,053	-		HMPREF1058_RS08565	0.53	-0.2
1,110,060	+				-0.0
1,110,061	-		HMPREF1058_RS08565	0.54	-0.6
1,110,094	+		HMPREF1058_RS08565	0.55	+0.0
1,110,094	+		HMPREF1058_RS08565	0.55	-0.2
1,110,097	-		HMPREF1058_RS08565	0.55	+0.7
1,110,097	-		HMPREF1058_RS08565	0.55	-0.5
1,110,097	-		HMPREF1058_RS08565	0.55	-0.3
1,110,104	+		HMPREF1058_RS08565	0.55	+0.4
1,110,139	-		HMPREF1058_RS08565	0.56	-1.3
1,110,173	+		HMPREF1058_RS08565	0.57	+0.2
1,110,174	-		HMPREF1058_RS08565	0.57	-0.5
1,110,203	-		HMPREF1058_RS08565	0.58	-0.5
1,110,255	+		HMPREF1058_RS08565	0.60	-0.1
1,110,322	+		HMPREF1058_RS08565	0.62	-1.4
1,110,323	-		HMPREF1058_RS08565	0.62	-0.4
1,110,324	+		HMPREF1058_RS08565	0.62	+0.0
1,110,325	-		HMPREF1058_RS08565	0.62	+0.7
1,110,349	-		HMPREF1058_RS08565	0.63	+1.0
1,110,405	+		HMPREF1058_RS08565	0.65	-0.3
1,110,406	-		HMPREF1058_RS08565	0.65	-0.6
1,110,406	-		HMPREF1058_RS08565	0.65	+0.6
1,110,541	+		HMPREF1058_RS08565	0.69	+0.3
1,110,680	+		HMPREF1058_RS08565	0.74	-0.1
1,110,681	-		HMPREF1058_RS08565	0.74	+0.6
1,110,715	+		HMPREF1058_RS08565	0.75	-1.0
1,110,716	-		HMPREF1058_RS08565	0.75	+0.2
1,110,717	+		HMPREF1058_RS08565	0.75	-1.1
1,110,717	+		HMPREF1058_RS08565	0.75	+2.9
1,110,719	+		HMPREF1058_RS08565	0.75	-0.5
1,110,719	+		HMPREF1058_RS08565	0.75	+0.7
1,110,719	+		HMPREF1058_RS08565	0.75	+0.3
1,110,719	+		HMPREF1058_RS08565	0.75	+0.6
1,110,720	-		HMPREF1058_RS08565	0.75	+0.1
1,110,720	-		HMPREF1058_RS08565	0.75	+1.5
1,110,720	-		HMPREF1058_RS08565	0.75	+0.4
1,110,721	+		HMPREF1058_RS08565	0.75	+0.5
1,110,721	+		HMPREF1058_RS08565	0.75	-0.5
1,110,722	-		HMPREF1058_RS08565	0.75	-0.7
1,110,722	-		HMPREF1058_RS08565	0.75	+0.5
1,110,722	-		HMPREF1058_RS08565	0.75	+0.2
1,110,723	+		HMPREF1058_RS08565	0.75	-0.5
1,110,753	-		HMPREF1058_RS08565	0.76	-0.9
1,110,843	+		HMPREF1058_RS08565	0.79	+0.4
1,110,844	-		HMPREF1058_RS08565	0.79	-0.9
1,110,915	+		HMPREF1058_RS08565	0.82	-0.2
1,110,940	-		HMPREF1058_RS08565	0.82	+0.4
1,110,947	+		HMPREF1058_RS08565	0.83	-0.9
1,110,947	+		HMPREF1058_RS08565	0.83	-1.6
1,110,948	-		HMPREF1058_RS08565	0.83	-1.2
1,110,948	-		HMPREF1058_RS08565	0.83	-0.6
1,110,975	-		HMPREF1058_RS08565	0.83	-1.5
1,110,980	+		HMPREF1058_RS08565	0.84	-1.6
1,111,075	+		HMPREF1058_RS08565	0.87	-0.7
1,111,106	+		HMPREF1058_RS08565	0.88	+1.3
1,111,158	+		HMPREF1058_RS08565	0.89	+0.1
1,111,172	-				-1.0
1,111,172	-		HMPREF1058_RS08565	0.90	-0.6
1,111,307	+				+0.0
1,111,308	-				+0.2
1,111,308	-				-2.1
1,111,308	-				+0.2
1,111,318	-				-0.5
1,111,353	-				-0.4
1,111,353	-				-0.3
1,111,365	-				-0.7
1,111,386	-				-0.6
1,111,412	+				-1.5
1,111,424	-				-0.7
1,111,482	+				+0.6
1,111,525	+				-0.5
1,111,526	-				-0.9
1,111,526	-				+0.5
1,111,560	+				+0.5
1,111,560	+				+1.2
1,111,612	+				+0.6
1,111,613	-				-0.2
1,111,615	-				-0.7
1,111,617	-				-0.5
1,111,637	+				-0.1
1,111,638	-				-0.7
1,111,694	+		HMPREF1058_RS08560	0.11	-0.2
1,111,695	-		HMPREF1058_RS08560	0.11	-0.7
1,111,698	-		HMPREF1058_RS08560	0.11	-1.0
1,111,700	+		HMPREF1058_RS08560	0.11	+0.5
1,111,701	-		HMPREF1058_RS08560	0.11	+0.3
1,111,783	+		HMPREF1058_RS08560	0.15	-0.3
1,111,922	-		HMPREF1058_RS08560	0.23	+0.0
1,111,951	-		HMPREF1058_RS08560	0.24	-0.4
1,111,951	-		HMPREF1058_RS08560	0.24	+1.5
1,112,022	+		HMPREF1058_RS08560	0.28	-0.4
1,112,025	-		HMPREF1058_RS08560	0.28	-1.0
1,112,027	+		HMPREF1058_RS08560	0.28	-0.0
1,112,221	+		HMPREF1058_RS08560	0.39	-0.1
1,112,307	+		HMPREF1058_RS08560	0.44	-0.8
1,112,309	+		HMPREF1058_RS08560	0.44	+0.5
1,112,323	+		HMPREF1058_RS08560	0.44	-0.4
1,112,330	+		HMPREF1058_RS08560	0.45	-0.5
1,112,330	+		HMPREF1058_RS08560	0.45	-0.2
1,112,366	+		HMPREF1058_RS08560	0.47	+0.6
1,112,367	-		HMPREF1058_RS08560	0.47	+0.6
1,112,367	-		HMPREF1058_RS08560	0.47	+0.4