Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08390

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS08395 and HMPREF1058_RS08390 are separated by 16 nucleotidesHMPREF1058_RS08390 and HMPREF1058_RS08385 are separated by 187 nucleotides HMPREF1058_RS08395: HMPREF1058_RS08395 - carbohydrate binding domain-containing protein, at 1,165,899 to 1,168,397 _RS08395 HMPREF1058_RS08390: HMPREF1058_RS08390 - beta-galactosidase, at 1,168,414 to 1,170,762 _RS08390 HMPREF1058_RS08385: HMPREF1058_RS08385 - helix-turn-helix domain-containing protein, at 1,170,950 to 1,173,790 _RS08385 Position (kb) 1168 1169 1170 1171Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1167.457 kb on + strand, within HMPREF1058_RS08395at 1167.474 kb on + strand, within HMPREF1058_RS08395at 1167.693 kb on + strand, within HMPREF1058_RS08395at 1167.750 kb on + strand, within HMPREF1058_RS08395at 1167.751 kb on - strand, within HMPREF1058_RS08395at 1167.753 kb on + strand, within HMPREF1058_RS08395at 1167.753 kb on + strand, within HMPREF1058_RS08395at 1167.753 kb on + strand, within HMPREF1058_RS08395at 1167.754 kb on - strand, within HMPREF1058_RS08395at 1167.773 kb on + strand, within HMPREF1058_RS08395at 1167.872 kb on - strand, within HMPREF1058_RS08395at 1167.897 kb on + strand, within HMPREF1058_RS08395at 1168.030 kb on + strand, within HMPREF1058_RS08395at 1168.030 kb on + strand, within HMPREF1058_RS08395at 1168.031 kb on - strand, within HMPREF1058_RS08395at 1168.054 kb on - strand, within HMPREF1058_RS08395at 1168.078 kb on - strand, within HMPREF1058_RS08395at 1168.133 kb on - strand, within HMPREF1058_RS08395at 1168.169 kb on + strandat 1168.169 kb on + strandat 1168.170 kb on - strandat 1168.170 kb on - strandat 1168.324 kb on + strandat 1168.401 kb on + strandat 1168.406 kb on - strandat 1168.577 kb on - strandat 1168.620 kb on + strandat 1168.673 kb on - strand, within HMPREF1058_RS08390at 1168.689 kb on + strand, within HMPREF1058_RS08390at 1168.732 kb on - strand, within HMPREF1058_RS08390at 1168.732 kb on - strand, within HMPREF1058_RS08390at 1168.732 kb on - strand, within HMPREF1058_RS08390at 1168.732 kb on - strand, within HMPREF1058_RS08390at 1168.735 kb on + strand, within HMPREF1058_RS08390at 1168.736 kb on - strand, within HMPREF1058_RS08390at 1168.736 kb on - strand, within HMPREF1058_RS08390at 1168.760 kb on - strand, within HMPREF1058_RS08390at 1168.760 kb on - strand, within HMPREF1058_RS08390at 1168.763 kb on + strand, within HMPREF1058_RS08390at 1168.764 kb on - strand, within HMPREF1058_RS08390at 1168.847 kb on - strand, within HMPREF1058_RS08390at 1168.870 kb on - strand, within HMPREF1058_RS08390at 1168.978 kb on + strand, within HMPREF1058_RS08390at 1168.978 kb on + strand, within HMPREF1058_RS08390at 1168.979 kb on - strand, within HMPREF1058_RS08390at 1169.019 kb on + strand, within HMPREF1058_RS08390at 1169.056 kb on - strand, within HMPREF1058_RS08390at 1169.199 kb on - strand, within HMPREF1058_RS08390at 1169.277 kb on + strand, within HMPREF1058_RS08390at 1169.371 kb on + strand, within HMPREF1058_RS08390at 1169.371 kb on + strand, within HMPREF1058_RS08390at 1169.371 kb on + strand, within HMPREF1058_RS08390at 1169.372 kb on - strand, within HMPREF1058_RS08390at 1169.372 kb on - strand, within HMPREF1058_RS08390at 1169.372 kb on - strand, within HMPREF1058_RS08390at 1169.377 kb on + strand, within HMPREF1058_RS08390at 1169.420 kb on - strand, within HMPREF1058_RS08390at 1169.429 kb on + strand, within HMPREF1058_RS08390at 1169.518 kb on - strand, within HMPREF1058_RS08390at 1169.531 kb on + strand, within HMPREF1058_RS08390at 1169.531 kb on + strand, within HMPREF1058_RS08390at 1169.617 kb on - strand, within HMPREF1058_RS08390at 1169.757 kb on + strand, within HMPREF1058_RS08390at 1169.757 kb on + strand, within HMPREF1058_RS08390at 1169.918 kb on - strand, within HMPREF1058_RS08390at 1169.968 kb on - strand, within HMPREF1058_RS08390at 1170.034 kb on - strand, within HMPREF1058_RS08390at 1170.297 kb on + strand, within HMPREF1058_RS08390at 1170.349 kb on - strand, within HMPREF1058_RS08390at 1170.393 kb on + strand, within HMPREF1058_RS08390at 1170.442 kb on - strand, within HMPREF1058_RS08390at 1170.615 kb on + strandat 1170.658 kb on + strandat 1170.660 kb on + strandat 1170.660 kb on + strandat 1170.660 kb on + strandat 1170.661 kb on - strandat 1170.725 kb on - strandat 1170.734 kb on - strandat 1170.737 kb on + strandat 1170.821 kb on - strandat 1170.949 kb on + strandat 1170.949 kb on + strandat 1170.950 kb on - strandat 1170.977 kb on + strandat 1170.979 kb on + strandat 1170.994 kb on - strandat 1170.997 kb on - strandat 1171.111 kb on + strandat 1171.111 kb on + strandat 1171.112 kb on - strandat 1171.138 kb on - strandat 1171.246 kb on + strand, within HMPREF1058_RS08385at 1171.246 kb on + strand, within HMPREF1058_RS08385at 1171.246 kb on + strand, within HMPREF1058_RS08385at 1171.246 kb on + strand, within HMPREF1058_RS08385at 1171.248 kb on + strand, within HMPREF1058_RS08385at 1171.274 kb on + strand, within HMPREF1058_RS08385at 1171.274 kb on + strand, within HMPREF1058_RS08385at 1171.276 kb on + strand, within HMPREF1058_RS08385at 1171.277 kb on - strand, within HMPREF1058_RS08385at 1171.302 kb on + strand, within HMPREF1058_RS08385at 1171.302 kb on + strand, within HMPREF1058_RS08385at 1171.302 kb on + strand, within HMPREF1058_RS08385at 1171.303 kb on - strand, within HMPREF1058_RS08385at 1171.309 kb on + strand, within HMPREF1058_RS08385at 1171.346 kb on + strand, within HMPREF1058_RS08385at 1171.346 kb on + strand, within HMPREF1058_RS08385at 1171.347 kb on - strand, within HMPREF1058_RS08385at 1171.372 kb on + strand, within HMPREF1058_RS08385at 1171.393 kb on + strand, within HMPREF1058_RS08385at 1171.393 kb on + strand, within HMPREF1058_RS08385at 1171.393 kb on + strand, within HMPREF1058_RS08385at 1171.628 kb on + strand, within HMPREF1058_RS08385at 1171.702 kb on - strand, within HMPREF1058_RS08385at 1171.702 kb on - strand, within HMPREF1058_RS08385

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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1,167,457 + HMPREF1058_RS08395 0.62 +0.9
1,167,474 + HMPREF1058_RS08395 0.63 -0.6
1,167,693 + HMPREF1058_RS08395 0.72 +0.1
1,167,750 + HMPREF1058_RS08395 0.74 +0.0
1,167,751 - HMPREF1058_RS08395 0.74 -0.9
1,167,753 + HMPREF1058_RS08395 0.74 +0.8
1,167,753 + HMPREF1058_RS08395 0.74 +0.7
1,167,753 + HMPREF1058_RS08395 0.74 -1.0
1,167,754 - HMPREF1058_RS08395 0.74 +1.1
1,167,773 + HMPREF1058_RS08395 0.75 +1.0
1,167,872 - HMPREF1058_RS08395 0.79 +0.0
1,167,897 + HMPREF1058_RS08395 0.80 +0.5
1,168,030 + HMPREF1058_RS08395 0.85 -0.4
1,168,030 + HMPREF1058_RS08395 0.85 +0.1
1,168,031 - HMPREF1058_RS08395 0.85 +1.3
1,168,054 - HMPREF1058_RS08395 0.86 +0.4
1,168,078 - HMPREF1058_RS08395 0.87 +0.1
1,168,133 - HMPREF1058_RS08395 0.89 -0.1
1,168,169 + -0.8
1,168,169 + +0.0
1,168,170 - -1.0
1,168,170 - -0.5
1,168,324 + -1.2
1,168,401 + +0.8
1,168,406 - +0.7
1,168,577 - -0.6
1,168,620 + +0.9
1,168,673 - HMPREF1058_RS08390 0.11 +0.3
1,168,689 + HMPREF1058_RS08390 0.12 -1.3
1,168,732 - HMPREF1058_RS08390 0.14 +0.5
1,168,732 - HMPREF1058_RS08390 0.14 -0.5
1,168,732 - HMPREF1058_RS08390 0.14 -0.3
1,168,732 - HMPREF1058_RS08390 0.14 -0.1
1,168,735 + HMPREF1058_RS08390 0.14 +0.7
1,168,736 - HMPREF1058_RS08390 0.14 -0.2
1,168,736 - HMPREF1058_RS08390 0.14 -1.6
1,168,760 - HMPREF1058_RS08390 0.15 -0.2
1,168,760 - HMPREF1058_RS08390 0.15 +0.1
1,168,763 + HMPREF1058_RS08390 0.15 +0.3
1,168,764 - HMPREF1058_RS08390 0.15 -0.3
1,168,847 - HMPREF1058_RS08390 0.18 +1.1
1,168,870 - HMPREF1058_RS08390 0.19 -0.1
1,168,978 + HMPREF1058_RS08390 0.24 +0.0
1,168,978 + HMPREF1058_RS08390 0.24 -0.0
1,168,979 - HMPREF1058_RS08390 0.24 -1.1
1,169,019 + HMPREF1058_RS08390 0.26 +0.6
1,169,056 - HMPREF1058_RS08390 0.27 +0.8
1,169,199 - HMPREF1058_RS08390 0.33 -1.8
1,169,277 + HMPREF1058_RS08390 0.37 +0.3
1,169,371 + HMPREF1058_RS08390 0.41 -1.1
1,169,371 + HMPREF1058_RS08390 0.41 -1.2
1,169,371 + HMPREF1058_RS08390 0.41 +0.5
1,169,372 - HMPREF1058_RS08390 0.41 -0.1
1,169,372 - HMPREF1058_RS08390 0.41 -2.8
1,169,372 - HMPREF1058_RS08390 0.41 -0.3
1,169,377 + HMPREF1058_RS08390 0.41 -0.5
1,169,420 - HMPREF1058_RS08390 0.43 +0.2
1,169,429 + HMPREF1058_RS08390 0.43 -0.0
1,169,518 - HMPREF1058_RS08390 0.47 -0.2
1,169,531 + HMPREF1058_RS08390 0.48 -0.4
1,169,531 + HMPREF1058_RS08390 0.48 -0.3
1,169,617 - HMPREF1058_RS08390 0.51 +0.8
1,169,757 + HMPREF1058_RS08390 0.57 +0.5
1,169,757 + HMPREF1058_RS08390 0.57 -1.1
1,169,918 - HMPREF1058_RS08390 0.64 +0.5
1,169,968 - HMPREF1058_RS08390 0.66 -0.1
1,170,034 - HMPREF1058_RS08390 0.69 +1.2
1,170,297 + HMPREF1058_RS08390 0.80 +0.6
1,170,349 - HMPREF1058_RS08390 0.82 +0.8
1,170,393 + HMPREF1058_RS08390 0.84 -0.0
1,170,442 - HMPREF1058_RS08390 0.86 -1.9
1,170,615 + -0.2
1,170,658 + -0.3
1,170,660 + -0.2
1,170,660 + -0.9
1,170,660 + +0.3
1,170,661 - -0.8
1,170,725 - -0.7
1,170,734 - +2.0
1,170,737 + +0.5
1,170,821 - -0.2
1,170,949 + +3.5
1,170,949 + +2.2
1,170,950 - -0.2
1,170,977 + +0.2
1,170,979 + +1.3
1,170,994 - +3.1
1,170,997 - -0.8
1,171,111 + +0.9
1,171,111 + -0.6
1,171,112 - -0.1
1,171,138 - +0.5
1,171,246 + HMPREF1058_RS08385 0.10 +0.7
1,171,246 + HMPREF1058_RS08385 0.10 +0.4
1,171,246 + HMPREF1058_RS08385 0.10 +0.2
1,171,246 + HMPREF1058_RS08385 0.10 +0.3
1,171,248 + HMPREF1058_RS08385 0.10 +0.7
1,171,274 + HMPREF1058_RS08385 0.11 +0.8
1,171,274 + HMPREF1058_RS08385 0.11 +0.3
1,171,276 + HMPREF1058_RS08385 0.11 -0.4
1,171,277 - HMPREF1058_RS08385 0.12 -0.6
1,171,302 + HMPREF1058_RS08385 0.12 +0.6
1,171,302 + HMPREF1058_RS08385 0.12 +0.5
1,171,302 + HMPREF1058_RS08385 0.12 +0.7
1,171,303 - HMPREF1058_RS08385 0.12 -0.7
1,171,309 + HMPREF1058_RS08385 0.13 +0.1
1,171,346 + HMPREF1058_RS08385 0.14 +0.9
1,171,346 + HMPREF1058_RS08385 0.14 -0.0
1,171,347 - HMPREF1058_RS08385 0.14 -2.1
1,171,372 + HMPREF1058_RS08385 0.15 -1.6
1,171,393 + HMPREF1058_RS08385 0.16 +0.5
1,171,393 + HMPREF1058_RS08385 0.16 +0.9
1,171,393 + HMPREF1058_RS08385 0.16 +0.4
1,171,628 + HMPREF1058_RS08385 0.24 +0.8
1,171,702 - HMPREF1058_RS08385 0.26 -0.1
1,171,702 - HMPREF1058_RS08385 0.26 -0.2

Or see this region's nucleotide sequence