Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08385

Experiment: Beta-Lactose 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Beta-Lactose 10 mM (C)
1,169,968	-		HMPREF1058_RS08390	0.66	-0.1
1,170,034	-		HMPREF1058_RS08390	0.69	+1.2
1,170,297	+		HMPREF1058_RS08390	0.80	+0.6
1,170,349	-		HMPREF1058_RS08390	0.82	+0.8
1,170,393	+		HMPREF1058_RS08390	0.84	-0.0
1,170,442	-		HMPREF1058_RS08390	0.86	-1.9
1,170,615	+				-0.2
1,170,658	+				-0.3
1,170,660	+				-0.2
1,170,660	+				-0.9
1,170,660	+				+0.3
1,170,661	-				-0.8
1,170,725	-				-0.7
1,170,734	-				+2.0
1,170,737	+				+0.5
1,170,821	-				-0.2
1,170,949	+				+3.5
1,170,949	+				+2.2
1,170,950	-				-0.2
1,170,977	+				+0.2
1,170,979	+				+1.3
1,170,994	-				+3.1
1,170,997	-				-0.8
1,171,111	+				+0.9
1,171,111	+				-0.6
1,171,112	-				-0.1
1,171,138	-				+0.5
1,171,246	+		HMPREF1058_RS08385	0.10	+0.7
1,171,246	+		HMPREF1058_RS08385	0.10	+0.4
1,171,246	+		HMPREF1058_RS08385	0.10	+0.2
1,171,246	+		HMPREF1058_RS08385	0.10	+0.3
1,171,248	+		HMPREF1058_RS08385	0.10	+0.7
1,171,274	+		HMPREF1058_RS08385	0.11	+0.8
1,171,274	+		HMPREF1058_RS08385	0.11	+0.3
1,171,276	+		HMPREF1058_RS08385	0.11	-0.4
1,171,277	-		HMPREF1058_RS08385	0.12	-0.6
1,171,302	+		HMPREF1058_RS08385	0.12	+0.6
1,171,302	+		HMPREF1058_RS08385	0.12	+0.5
1,171,302	+		HMPREF1058_RS08385	0.12	+0.7
1,171,303	-		HMPREF1058_RS08385	0.12	-0.7
1,171,309	+		HMPREF1058_RS08385	0.13	+0.1
1,171,346	+		HMPREF1058_RS08385	0.14	+0.9
1,171,346	+		HMPREF1058_RS08385	0.14	-0.0
1,171,347	-		HMPREF1058_RS08385	0.14	-2.1
1,171,372	+		HMPREF1058_RS08385	0.15	-1.6
1,171,393	+		HMPREF1058_RS08385	0.16	+0.5
1,171,393	+		HMPREF1058_RS08385	0.16	+0.9
1,171,393	+		HMPREF1058_RS08385	0.16	+0.4
1,171,628	+		HMPREF1058_RS08385	0.24	+0.8
1,171,702	-		HMPREF1058_RS08385	0.26	-0.1
1,171,702	-		HMPREF1058_RS08385	0.26	-0.2
1,171,781	+		HMPREF1058_RS08385	0.29	+0.1
1,171,782	-		HMPREF1058_RS08385	0.29	-0.9
1,171,819	-		HMPREF1058_RS08385	0.31	+1.1
1,171,885	+		HMPREF1058_RS08385	0.33	-0.4
1,171,893	+		HMPREF1058_RS08385	0.33	+0.6
1,171,894	-		HMPREF1058_RS08385	0.33	-0.6
1,171,956	+		HMPREF1058_RS08385	0.35	+0.5
1,171,957	-		HMPREF1058_RS08385	0.35	+0.0
1,171,972	+		HMPREF1058_RS08385	0.36	+1.4
1,171,973	-		HMPREF1058_RS08385	0.36	-0.8
1,171,986	-		HMPREF1058_RS08385	0.36	+0.7
1,172,013	+		HMPREF1058_RS08385	0.37	+1.2
1,172,059	+		HMPREF1058_RS08385	0.39	+0.6
1,172,194	+		HMPREF1058_RS08385	0.44	+0.6
1,172,194	+		HMPREF1058_RS08385	0.44	+0.8
1,172,195	-		HMPREF1058_RS08385	0.44	+0.7
1,172,195	-		HMPREF1058_RS08385	0.44	-0.1
1,172,197	+		HMPREF1058_RS08385	0.44	+1.3
1,172,197	+		HMPREF1058_RS08385	0.44	+1.2
1,172,231	-		HMPREF1058_RS08385	0.45	-0.3
1,172,270	+		HMPREF1058_RS08385	0.46	+0.9
1,172,270	+		HMPREF1058_RS08385	0.46	+2.1
1,172,566	+		HMPREF1058_RS08385	0.57	+1.0
1,172,616	-		HMPREF1058_RS08385	0.59	-0.9
1,172,622	-		HMPREF1058_RS08385	0.59	-0.3
1,172,652	-		HMPREF1058_RS08385	0.60	-0.1
1,172,708	+		HMPREF1058_RS08385	0.62	+1.4
1,172,708	+		HMPREF1058_RS08385	0.62	+0.4
1,172,709	-		HMPREF1058_RS08385	0.62	-1.1
1,172,710	+		HMPREF1058_RS08385	0.62	+2.3
1,172,710	+		HMPREF1058_RS08385	0.62	-0.0
1,172,711	-		HMPREF1058_RS08385	0.62	+1.9
1,172,729	-		HMPREF1058_RS08385	0.63	+0.8
1,172,780	+		HMPREF1058_RS08385	0.64	+0.3
1,172,780	+		HMPREF1058_RS08385	0.64	+0.8
1,172,780	+		HMPREF1058_RS08385	0.64	-0.3
1,172,780	+		HMPREF1058_RS08385	0.64	+0.7
1,172,940	+		HMPREF1058_RS08385	0.70	+1.3
1,172,947	+		HMPREF1058_RS08385	0.70	+0.7
1,172,949	+		HMPREF1058_RS08385	0.70	+0.6
1,172,949	+		HMPREF1058_RS08385	0.70	+1.6
1,172,949	+		HMPREF1058_RS08385	0.70	+0.2
1,172,950	-		HMPREF1058_RS08385	0.70	-0.2
1,172,983	+		HMPREF1058_RS08385	0.72	+1.8
1,173,084	+		HMPREF1058_RS08385	0.75	+1.4
1,173,126	+		HMPREF1058_RS08385	0.77	+2.0
1,173,127	-		HMPREF1058_RS08385	0.77	-0.2
1,173,128	+		HMPREF1058_RS08385	0.77	+1.2
1,173,128	+		HMPREF1058_RS08385	0.77	+2.6
1,173,129	-		HMPREF1058_RS08385	0.77	-0.6
1,173,184	+		HMPREF1058_RS08385	0.79	+3.3
1,173,185	-		HMPREF1058_RS08385	0.79	+0.4
1,173,288	-		HMPREF1058_RS08385	0.82	-0.2
1,173,296	+		HMPREF1058_RS08385	0.83	+2.1
1,173,296	+		HMPREF1058_RS08385	0.83	+0.5
1,173,297	-		HMPREF1058_RS08385	0.83	+1.6
1,173,297	-		HMPREF1058_RS08385	0.83	-0.5
1,173,301	-		HMPREF1058_RS08385	0.83	+0.3
1,173,335	+		HMPREF1058_RS08385	0.84	+1.9
1,173,400	+		HMPREF1058_RS08385	0.86	-0.2
1,173,409	+		HMPREF1058_RS08385	0.87	+1.3
1,173,421	+		HMPREF1058_RS08385	0.87	+0.7
1,173,424	+		HMPREF1058_RS08385	0.87	-0.8
1,173,502	+		HMPREF1058_RS08385	0.90	-0.0
1,173,509	-				+0.3
1,173,554	-				-0.1
1,173,554	-				-0.1
1,173,577	+				-1.0
1,173,661	+				+0.7
1,173,849	+				+0.7
1,173,850	-				+1.1
1,173,896	+				-0.3
1,173,975	+				+0.1
1,173,975	+				-0.8
1,173,976	-				+0.1
1,173,979	+				-1.7
1,173,979	+				+0.2
1,173,979	+				-0.5
1,173,987	+				-2.4
1,174,139	+				-1.4
1,174,140	-				+0.5
1,174,224	+				+0.1
1,174,224	+				-0.4
1,174,225	-				+1.1
1,174,325	+		HMPREF1058_RS08380	0.11	-0.0
1,174,362	-		HMPREF1058_RS08380	0.12	+0.3
1,174,476	-		HMPREF1058_RS08380	0.16	+0.3
1,174,518	-		HMPREF1058_RS08380	0.17	+0.8
1,174,630	-		HMPREF1058_RS08380	0.21	+0.7
1,174,660	+		HMPREF1058_RS08380	0.22	+0.4
1,174,667	+		HMPREF1058_RS08380	0.23	+0.4
1,174,709	+		HMPREF1058_RS08380	0.24	-0.4
1,174,716	+		HMPREF1058_RS08380	0.24	-0.6
1,174,724	+		HMPREF1058_RS08380	0.24	-0.3
1,174,725	-		HMPREF1058_RS08380	0.25	-0.0