Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07920

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07930 and HMPREF1058_RS07925 are separated by 106 nucleotidesHMPREF1058_RS07925 and HMPREF1058_RS07920 overlap by 18 nucleotidesHMPREF1058_RS07920 and HMPREF1058_RS07915 are separated by 296 nucleotides HMPREF1058_RS07930: HMPREF1058_RS07930 - TerB family tellurite resistance protein, at 100,958 to 101,740 _RS07930 HMPREF1058_RS07925: HMPREF1058_RS07925 - dihydrofolate reductase, at 101,847 to 102,731 _RS07925 HMPREF1058_RS07920: HMPREF1058_RS07920 - DUF108 domain-containing protein, at 102,714 to 103,502 _RS07920 HMPREF1058_RS07915: HMPREF1058_RS07915 - hypothetical protein, at 103,799 to 104,878 _RS07915 Position (kb) 102 103 104Strain fitness (log2 ratio) -2 -1 0 1 2at 101.819 kb on + strandat 101.846 kb on + strandat 101.870 kb on - strandat 101.870 kb on - strandat 101.870 kb on - strandat 101.933 kb on + strandat 101.937 kb on + strand, within HMPREF1058_RS07925at 101.999 kb on - strand, within HMPREF1058_RS07925at 102.012 kb on - strand, within HMPREF1058_RS07925at 102.033 kb on - strand, within HMPREF1058_RS07925at 102.068 kb on + strand, within HMPREF1058_RS07925at 102.084 kb on + strand, within HMPREF1058_RS07925at 102.137 kb on + strand, within HMPREF1058_RS07925at 102.178 kb on + strand, within HMPREF1058_RS07925at 102.178 kb on + strand, within HMPREF1058_RS07925at 102.183 kb on + strand, within HMPREF1058_RS07925at 102.184 kb on - strand, within HMPREF1058_RS07925at 102.188 kb on - strand, within HMPREF1058_RS07925at 102.188 kb on - strand, within HMPREF1058_RS07925at 102.188 kb on - strand, within HMPREF1058_RS07925at 102.280 kb on + strand, within HMPREF1058_RS07925at 102.280 kb on + strand, within HMPREF1058_RS07925at 102.280 kb on + strand, within HMPREF1058_RS07925at 102.302 kb on + strand, within HMPREF1058_RS07925at 102.303 kb on - strand, within HMPREF1058_RS07925at 102.345 kb on + strand, within HMPREF1058_RS07925at 102.345 kb on + strand, within HMPREF1058_RS07925at 102.346 kb on - strand, within HMPREF1058_RS07925at 102.346 kb on - strand, within HMPREF1058_RS07925at 102.497 kb on + strand, within HMPREF1058_RS07925at 102.506 kb on - strand, within HMPREF1058_RS07925at 102.509 kb on - strand, within HMPREF1058_RS07925at 102.595 kb on + strand, within HMPREF1058_RS07925at 102.595 kb on + strand, within HMPREF1058_RS07925at 102.645 kb on - strandat 102.652 kb on + strandat 102.720 kb on + strandat 102.791 kb on - strandat 102.799 kb on - strand, within HMPREF1058_RS07920at 102.811 kb on - strand, within HMPREF1058_RS07920at 102.811 kb on - strand, within HMPREF1058_RS07920at 102.930 kb on + strand, within HMPREF1058_RS07920at 102.931 kb on - strand, within HMPREF1058_RS07920at 102.931 kb on - strand, within HMPREF1058_RS07920at 102.931 kb on - strand, within HMPREF1058_RS07920at 102.952 kb on - strand, within HMPREF1058_RS07920at 103.067 kb on + strand, within HMPREF1058_RS07920at 103.068 kb on - strand, within HMPREF1058_RS07920at 103.203 kb on + strand, within HMPREF1058_RS07920at 103.404 kb on + strand, within HMPREF1058_RS07920at 103.404 kb on + strand, within HMPREF1058_RS07920at 103.410 kb on + strand, within HMPREF1058_RS07920at 103.483 kb on - strandat 103.483 kb on - strandat 103.485 kb on + strandat 103.486 kb on - strandat 103.557 kb on + strandat 103.567 kb on + strandat 103.580 kb on - strandat 103.620 kb on + strandat 103.624 kb on - strandat 103.636 kb on - strandat 103.694 kb on - strandat 103.705 kb on - strandat 103.757 kb on - strandat 103.784 kb on - strandat 103.815 kb on + strandat 103.815 kb on + strandat 103.815 kb on + strandat 103.816 kb on - strandat 103.816 kb on - strandat 103.816 kb on - strandat 103.819 kb on - strandat 103.893 kb on + strandat 103.975 kb on + strand, within HMPREF1058_RS07915at 104.034 kb on - strand, within HMPREF1058_RS07915at 104.034 kb on - strand, within HMPREF1058_RS07915at 104.044 kb on + strand, within HMPREF1058_RS07915at 104.044 kb on + strand, within HMPREF1058_RS07915at 104.045 kb on - strand, within HMPREF1058_RS07915at 104.287 kb on + strand, within HMPREF1058_RS07915at 104.363 kb on - strand, within HMPREF1058_RS07915at 104.377 kb on - strand, within HMPREF1058_RS07915at 104.444 kb on - strand, within HMPREF1058_RS07915

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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101,819 + +0.9
101,846 + +1.2
101,870 - +0.1
101,870 - -1.9
101,870 - +0.3
101,933 + -1.6
101,937 + HMPREF1058_RS07925 0.10 -0.1
101,999 - HMPREF1058_RS07925 0.17 +0.7
102,012 - HMPREF1058_RS07925 0.19 +2.2
102,033 - HMPREF1058_RS07925 0.21 +0.8
102,068 + HMPREF1058_RS07925 0.25 -1.3
102,084 + HMPREF1058_RS07925 0.27 -0.9
102,137 + HMPREF1058_RS07925 0.33 -1.6
102,178 + HMPREF1058_RS07925 0.37 +1.9
102,178 + HMPREF1058_RS07925 0.37 -0.5
102,183 + HMPREF1058_RS07925 0.38 +0.7
102,184 - HMPREF1058_RS07925 0.38 +0.9
102,188 - HMPREF1058_RS07925 0.39 -0.1
102,188 - HMPREF1058_RS07925 0.39 +0.2
102,188 - HMPREF1058_RS07925 0.39 -0.1
102,280 + HMPREF1058_RS07925 0.49 -0.3
102,280 + HMPREF1058_RS07925 0.49 -0.5
102,280 + HMPREF1058_RS07925 0.49 +0.6
102,302 + HMPREF1058_RS07925 0.51 +0.7
102,303 - HMPREF1058_RS07925 0.52 -1.0
102,345 + HMPREF1058_RS07925 0.56 -0.7
102,345 + HMPREF1058_RS07925 0.56 -0.2
102,346 - HMPREF1058_RS07925 0.56 -1.6
102,346 - HMPREF1058_RS07925 0.56 +0.0
102,497 + HMPREF1058_RS07925 0.73 -0.4
102,506 - HMPREF1058_RS07925 0.74 +0.6
102,509 - HMPREF1058_RS07925 0.75 -1.5
102,595 + HMPREF1058_RS07925 0.85 -1.2
102,595 + HMPREF1058_RS07925 0.85 +0.1
102,645 - -0.4
102,652 + +2.0
102,720 + +2.2
102,791 - -0.1
102,799 - HMPREF1058_RS07920 0.11 +0.5
102,811 - HMPREF1058_RS07920 0.12 +1.3
102,811 - HMPREF1058_RS07920 0.12 +2.0
102,930 + HMPREF1058_RS07920 0.27 +0.7
102,931 - HMPREF1058_RS07920 0.28 +1.1
102,931 - HMPREF1058_RS07920 0.28 +0.6
102,931 - HMPREF1058_RS07920 0.28 +0.9
102,952 - HMPREF1058_RS07920 0.30 -0.7
103,067 + HMPREF1058_RS07920 0.45 +1.5
103,068 - HMPREF1058_RS07920 0.45 -0.7
103,203 + HMPREF1058_RS07920 0.62 +0.2
103,404 + HMPREF1058_RS07920 0.87 +1.8
103,404 + HMPREF1058_RS07920 0.87 +0.9
103,410 + HMPREF1058_RS07920 0.88 +1.1
103,483 - -0.7
103,483 - +1.0
103,485 + +1.5
103,486 - -0.5
103,557 + +0.6
103,567 + -0.0
103,580 - -0.2
103,620 + -0.6
103,624 - -0.7
103,636 - -0.8
103,694 - +0.2
103,705 - -0.6
103,757 - +0.2
103,784 - +0.1
103,815 + +1.2
103,815 + -1.0
103,815 + +0.3
103,816 - -0.5
103,816 - +0.3
103,816 - +0.9
103,819 - -2.3
103,893 + +0.3
103,975 + HMPREF1058_RS07915 0.16 +1.7
104,034 - HMPREF1058_RS07915 0.22 -0.1
104,034 - HMPREF1058_RS07915 0.22 -0.3
104,044 + HMPREF1058_RS07915 0.23 -0.8
104,044 + HMPREF1058_RS07915 0.23 +0.9
104,045 - HMPREF1058_RS07915 0.23 -0.5
104,287 + HMPREF1058_RS07915 0.45 -0.1
104,363 - HMPREF1058_RS07915 0.52 -0.8
104,377 - HMPREF1058_RS07915 0.54 -0.9
104,444 - HMPREF1058_RS07915 0.60 -0.5

Or see this region's nucleotide sequence