Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07430 and HMPREF1058_RS07425 are separated by 19 nucleotides HMPREF1058_RS07425 and HMPREF1058_RS07420 are separated by 132 nucleotides
HMPREF1058_RS07430: HMPREF1058_RS07430 - TonB-dependent receptor, at 226,191 to 229,466
_RS07430
HMPREF1058_RS07425: HMPREF1058_RS07425 - SusD family outer membrane lipoprotein NanU, at 229,486 to 230,988
_RS07425
HMPREF1058_RS07420: HMPREF1058_RS07420 - exo-alpha-sialidase, at 231,121 to 232,761
_RS07420
Position (kb) 229
230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 228.706 kb on - strand, within HMPREF1058_RS07430 at 228.708 kb on - strand, within HMPREF1058_RS07430 at 228.811 kb on - strand, within HMPREF1058_RS07430 at 228.854 kb on - strand, within HMPREF1058_RS07430 at 228.886 kb on + strand, within HMPREF1058_RS07430 at 228.886 kb on + strand, within HMPREF1058_RS07430 at 228.918 kb on - strand, within HMPREF1058_RS07430 at 228.918 kb on - strand, within HMPREF1058_RS07430 at 228.979 kb on - strand, within HMPREF1058_RS07430 at 229.047 kb on + strand, within HMPREF1058_RS07430 at 229.048 kb on - strand, within HMPREF1058_RS07430 at 229.048 kb on - strand, within HMPREF1058_RS07430 at 229.122 kb on - strand, within HMPREF1058_RS07430 at 229.122 kb on - strand, within HMPREF1058_RS07430 at 229.178 kb on + strand at 229.227 kb on + strand at 229.247 kb on - strand at 229.260 kb on - strand at 229.331 kb on - strand at 229.335 kb on + strand at 229.335 kb on + strand at 229.336 kb on - strand at 229.338 kb on - strand at 229.405 kb on + strand at 229.419 kb on + strand at 229.419 kb on + strand at 229.545 kb on + strand at 229.546 kb on - strand at 229.546 kb on - strand at 229.753 kb on + strand, within HMPREF1058_RS07425 at 229.758 kb on + strand, within HMPREF1058_RS07425 at 229.759 kb on - strand, within HMPREF1058_RS07425 at 229.915 kb on + strand, within HMPREF1058_RS07425 at 229.915 kb on + strand, within HMPREF1058_RS07425 at 229.916 kb on - strand, within HMPREF1058_RS07425 at 229.918 kb on + strand, within HMPREF1058_RS07425 at 229.920 kb on + strand, within HMPREF1058_RS07425 at 229.921 kb on - strand, within HMPREF1058_RS07425 at 229.931 kb on + strand, within HMPREF1058_RS07425 at 229.959 kb on + strand, within HMPREF1058_RS07425 at 230.051 kb on + strand, within HMPREF1058_RS07425 at 230.051 kb on + strand, within HMPREF1058_RS07425 at 230.051 kb on + strand, within HMPREF1058_RS07425 at 230.052 kb on - strand, within HMPREF1058_RS07425 at 230.068 kb on + strand, within HMPREF1058_RS07425 at 230.085 kb on + strand, within HMPREF1058_RS07425 at 230.147 kb on + strand, within HMPREF1058_RS07425 at 230.147 kb on + strand, within HMPREF1058_RS07425 at 230.147 kb on + strand, within HMPREF1058_RS07425 at 230.148 kb on - strand, within HMPREF1058_RS07425 at 230.148 kb on - strand, within HMPREF1058_RS07425 at 230.149 kb on + strand, within HMPREF1058_RS07425 at 230.219 kb on + strand, within HMPREF1058_RS07425 at 230.229 kb on + strand, within HMPREF1058_RS07425 at 230.259 kb on + strand, within HMPREF1058_RS07425 at 230.282 kb on - strand, within HMPREF1058_RS07425 at 230.290 kb on - strand, within HMPREF1058_RS07425 at 230.296 kb on - strand, within HMPREF1058_RS07425 at 230.340 kb on + strand, within HMPREF1058_RS07425 at 230.420 kb on + strand, within HMPREF1058_RS07425 at 230.424 kb on + strand, within HMPREF1058_RS07425 at 230.531 kb on + strand, within HMPREF1058_RS07425 at 230.531 kb on + strand, within HMPREF1058_RS07425 at 230.532 kb on - strand, within HMPREF1058_RS07425 at 230.532 kb on - strand, within HMPREF1058_RS07425 at 230.535 kb on + strand, within HMPREF1058_RS07425 at 230.535 kb on + strand, within HMPREF1058_RS07425 at 230.535 kb on + strand, within HMPREF1058_RS07425 at 230.535 kb on + strand, within HMPREF1058_RS07425 at 230.536 kb on - strand, within HMPREF1058_RS07425 at 230.536 kb on - strand, within HMPREF1058_RS07425 at 230.584 kb on - strand, within HMPREF1058_RS07425 at 230.587 kb on + strand, within HMPREF1058_RS07425 at 230.588 kb on - strand, within HMPREF1058_RS07425 at 230.611 kb on - strand, within HMPREF1058_RS07425 at 230.637 kb on + strand, within HMPREF1058_RS07425 at 230.638 kb on - strand, within HMPREF1058_RS07425 at 230.638 kb on - strand, within HMPREF1058_RS07425 at 230.749 kb on + strand, within HMPREF1058_RS07425 at 230.750 kb on - strand, within HMPREF1058_RS07425 at 230.857 kb on + strand at 230.952 kb on + strand at 230.952 kb on + strand at 231.138 kb on - strand at 231.147 kb on - strand at 231.159 kb on + strand at 231.164 kb on + strand at 231.196 kb on - strand at 231.196 kb on - strand at 231.264 kb on - strand at 231.419 kb on - strand at 231.419 kb on - strand, within HMPREF1058_RS07420 at 231.419 kb on - strand, within HMPREF1058_RS07420 at 231.420 kb on + strand, within HMPREF1058_RS07420 at 231.421 kb on - strand, within HMPREF1058_RS07420 at 231.421 kb on - strand, within HMPREF1058_RS07420 at 231.421 kb on - strand, within HMPREF1058_RS07420 at 231.421 kb on - strand, within HMPREF1058_RS07420 at 231.422 kb on + strand, within HMPREF1058_RS07420 at 231.426 kb on + strand, within HMPREF1058_RS07420 at 231.426 kb on + strand at 231.459 kb on + strand, within HMPREF1058_RS07420 at 231.588 kb on + strand, within HMPREF1058_RS07420 at 231.589 kb on - strand, within HMPREF1058_RS07420 at 231.589 kb on - strand, within HMPREF1058_RS07420 at 231.679 kb on + strand, within HMPREF1058_RS07420 at 231.680 kb on - strand, within HMPREF1058_RS07420 at 231.733 kb on - strand, within HMPREF1058_RS07420 at 231.776 kb on + strand, within HMPREF1058_RS07420 at 231.777 kb on - strand, within HMPREF1058_RS07420 at 231.778 kb on + strand, within HMPREF1058_RS07420 at 231.785 kb on + strand, within HMPREF1058_RS07420 at 231.785 kb on + strand, within HMPREF1058_RS07420 at 231.786 kb on - strand, within HMPREF1058_RS07420 at 231.795 kb on + strand, within HMPREF1058_RS07420 at 231.799 kb on - strand, within HMPREF1058_RS07420 at 231.817 kb on + strand, within HMPREF1058_RS07420 at 231.818 kb on - strand, within HMPREF1058_RS07420 at 231.818 kb on - strand, within HMPREF1058_RS07420 at 231.818 kb on - strand, within HMPREF1058_RS07420 at 231.843 kb on + strand, within HMPREF1058_RS07420 at 231.844 kb on - strand, within HMPREF1058_RS07420 at 231.898 kb on + strand, within HMPREF1058_RS07420 at 231.899 kb on - strand at 231.955 kb on - strand, within HMPREF1058_RS07420 at 231.969 kb on + strand, within HMPREF1058_RS07420
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 228,706 - HMPREF1058_RS07430 0.77 -0.8 228,708 - HMPREF1058_RS07430 0.77 -0.7 228,811 - HMPREF1058_RS07430 0.80 +1.8 228,854 - HMPREF1058_RS07430 0.81 -1.0 228,886 + HMPREF1058_RS07430 0.82 +3.4 228,886 + HMPREF1058_RS07430 0.82 +1.8 228,918 - HMPREF1058_RS07430 0.83 -0.9 228,918 - HMPREF1058_RS07430 0.83 -0.5 228,979 - HMPREF1058_RS07430 0.85 -0.6 229,047 + HMPREF1058_RS07430 0.87 +2.1 229,048 - HMPREF1058_RS07430 0.87 +0.6 229,048 - HMPREF1058_RS07430 0.87 +0.6 229,122 - HMPREF1058_RS07430 0.89 -0.5 229,122 - HMPREF1058_RS07430 0.89 +0.0 229,178 + +3.1 229,227 + +3.5 229,247 - -1.1 229,260 - -1.0 229,331 - -1.3 229,335 + +2.5 229,335 + +3.0 229,336 - -1.3 229,338 - -1.4 229,405 + +3.7 229,419 + +3.1 229,419 + +2.8 229,545 + +1.0 229,546 - -0.4 229,546 - -0.3 229,753 + HMPREF1058_RS07425 0.18 +0.9 229,758 + HMPREF1058_RS07425 0.18 +0.5 229,759 - HMPREF1058_RS07425 0.18 -1.7 229,915 + HMPREF1058_RS07425 0.29 +1.3 229,915 + HMPREF1058_RS07425 0.29 +1.1 229,916 - HMPREF1058_RS07425 0.29 -0.2 229,918 + HMPREF1058_RS07425 0.29 +1.2 229,920 + HMPREF1058_RS07425 0.29 +0.2 229,921 - HMPREF1058_RS07425 0.29 +0.3 229,931 + HMPREF1058_RS07425 0.30 +0.9 229,959 + HMPREF1058_RS07425 0.31 +1.5 230,051 + HMPREF1058_RS07425 0.38 +1.5 230,051 + HMPREF1058_RS07425 0.38 +0.7 230,051 + HMPREF1058_RS07425 0.38 +1.6 230,052 - HMPREF1058_RS07425 0.38 -0.4 230,068 + HMPREF1058_RS07425 0.39 +2.4 230,085 + HMPREF1058_RS07425 0.40 +2.2 230,147 + HMPREF1058_RS07425 0.44 +1.3 230,147 + HMPREF1058_RS07425 0.44 +1.8 230,147 + HMPREF1058_RS07425 0.44 +2.1 230,148 - HMPREF1058_RS07425 0.44 -0.6 230,148 - HMPREF1058_RS07425 0.44 -1.1 230,149 + HMPREF1058_RS07425 0.44 +1.1 230,219 + HMPREF1058_RS07425 0.49 +1.6 230,229 + HMPREF1058_RS07425 0.49 +2.7 230,259 + HMPREF1058_RS07425 0.51 +1.1 230,282 - HMPREF1058_RS07425 0.53 -0.0 230,290 - HMPREF1058_RS07425 0.53 -0.5 230,296 - HMPREF1058_RS07425 0.54 +0.3 230,340 + HMPREF1058_RS07425 0.57 +2.0 230,420 + HMPREF1058_RS07425 0.62 +1.6 230,424 + HMPREF1058_RS07425 0.62 +2.1 230,531 + HMPREF1058_RS07425 0.70 +2.1 230,531 + HMPREF1058_RS07425 0.70 +4.0 230,532 - HMPREF1058_RS07425 0.70 -1.8 230,532 - HMPREF1058_RS07425 0.70 -0.2 230,535 + HMPREF1058_RS07425 0.70 +2.0 230,535 + HMPREF1058_RS07425 0.70 +2.6 230,535 + HMPREF1058_RS07425 0.70 +2.1 230,535 + HMPREF1058_RS07425 0.70 +2.4 230,536 - HMPREF1058_RS07425 0.70 -1.7 230,536 - HMPREF1058_RS07425 0.70 +1.6 230,584 - HMPREF1058_RS07425 0.73 -2.4 230,587 + HMPREF1058_RS07425 0.73 +1.8 230,588 - HMPREF1058_RS07425 0.73 +0.2 230,611 - HMPREF1058_RS07425 0.75 -1.4 230,637 + HMPREF1058_RS07425 0.77 +2.2 230,638 - HMPREF1058_RS07425 0.77 -0.2 230,638 - HMPREF1058_RS07425 0.77 -1.2 230,749 + HMPREF1058_RS07425 0.84 +3.1 230,750 - HMPREF1058_RS07425 0.84 -0.6 230,857 + +3.9 230,952 + +4.0 230,952 + +3.3 231,138 - -0.1 231,147 - -1.5 231,159 + +0.1 231,164 + +0.7 231,196 - -0.3 231,196 - -2.9 231,264 - -1.2 231,419 - +0.2 231,419 - HMPREF1058_RS07420 0.18 -0.2 231,419 - HMPREF1058_RS07420 0.18 -0.4 231,420 + HMPREF1058_RS07420 0.18 +1.0 231,421 - HMPREF1058_RS07420 0.18 -0.8 231,421 - HMPREF1058_RS07420 0.18 -0.7 231,421 - HMPREF1058_RS07420 0.18 -1.9 231,421 - HMPREF1058_RS07420 0.18 -0.9 231,422 + HMPREF1058_RS07420 0.18 +0.8 231,426 + HMPREF1058_RS07420 0.19 +1.1 231,426 + +0.4 231,459 + HMPREF1058_RS07420 0.21 -0.3 231,588 + HMPREF1058_RS07420 0.28 -0.6 231,589 - HMPREF1058_RS07420 0.29 -0.5 231,589 - HMPREF1058_RS07420 0.29 -0.6 231,679 + HMPREF1058_RS07420 0.34 +0.2 231,680 - HMPREF1058_RS07420 0.34 -0.6 231,733 - HMPREF1058_RS07420 0.37 +0.7 231,776 + HMPREF1058_RS07420 0.40 +0.8 231,777 - HMPREF1058_RS07420 0.40 +0.8 231,778 + HMPREF1058_RS07420 0.40 +2.0 231,785 + HMPREF1058_RS07420 0.40 +0.0 231,785 + HMPREF1058_RS07420 0.40 +1.1 231,786 - HMPREF1058_RS07420 0.41 -1.2 231,795 + HMPREF1058_RS07420 0.41 +0.5 231,799 - HMPREF1058_RS07420 0.41 +0.9 231,817 + HMPREF1058_RS07420 0.42 +0.0 231,818 - HMPREF1058_RS07420 0.42 -0.3 231,818 - HMPREF1058_RS07420 0.42 -0.9 231,818 - HMPREF1058_RS07420 0.42 +1.9 231,843 + HMPREF1058_RS07420 0.44 +0.1 231,844 - HMPREF1058_RS07420 0.44 -0.7 231,898 + HMPREF1058_RS07420 0.47 -0.1 231,899 - +1.2 231,955 - HMPREF1058_RS07420 0.51 -0.9 231,969 + HMPREF1058_RS07420 0.52 +0.3
Or see this region's nucleotide sequence