Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07415

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07420 and HMPREF1058_RS07415 are separated by 3 nucleotidesHMPREF1058_RS07415 and HMPREF1058_RS07410 are separated by 1 nucleotidesHMPREF1058_RS07410 and HMPREF1058_RS07405 overlap by 4 nucleotides HMPREF1058_RS07420: HMPREF1058_RS07420 - exo-alpha-sialidase, at 231,121 to 232,761 _RS07420 HMPREF1058_RS07415: HMPREF1058_RS07415 - family 20 glycosylhydrolase, at 232,765 to 234,771 _RS07415 HMPREF1058_RS07410: HMPREF1058_RS07410 - sialate O-acetylesterase, at 234,773 to 235,438 _RS07410 HMPREF1058_RS07405: HMPREF1058_RS07405 - sialate O-acetylesterase, at 235,435 to 237,498 _RS07405 Position (kb) 232 233 234 235Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 231.776 kb on + strand, within HMPREF1058_RS07420at 231.777 kb on - strand, within HMPREF1058_RS07420at 231.778 kb on + strand, within HMPREF1058_RS07420at 231.785 kb on + strand, within HMPREF1058_RS07420at 231.785 kb on + strand, within HMPREF1058_RS07420at 231.786 kb on - strand, within HMPREF1058_RS07420at 231.795 kb on + strand, within HMPREF1058_RS07420at 231.799 kb on - strand, within HMPREF1058_RS07420at 231.817 kb on + strand, within HMPREF1058_RS07420at 231.818 kb on - strand, within HMPREF1058_RS07420at 231.818 kb on - strand, within HMPREF1058_RS07420at 231.818 kb on - strand, within HMPREF1058_RS07420at 231.843 kb on + strand, within HMPREF1058_RS07420at 231.844 kb on - strand, within HMPREF1058_RS07420at 231.898 kb on + strand, within HMPREF1058_RS07420at 231.899 kb on - strandat 231.955 kb on - strand, within HMPREF1058_RS07420at 231.969 kb on + strand, within HMPREF1058_RS07420at 232.053 kb on + strand, within HMPREF1058_RS07420at 232.053 kb on + strand, within HMPREF1058_RS07420at 232.116 kb on + strand, within HMPREF1058_RS07420at 232.147 kb on + strand, within HMPREF1058_RS07420at 232.170 kb on + strand, within HMPREF1058_RS07420at 232.176 kb on + strand, within HMPREF1058_RS07420at 232.176 kb on + strand, within HMPREF1058_RS07420at 232.177 kb on - strand, within HMPREF1058_RS07420at 232.182 kb on + strand, within HMPREF1058_RS07420at 232.218 kb on + strand, within HMPREF1058_RS07420at 232.239 kb on + strand, within HMPREF1058_RS07420at 232.240 kb on - strand, within HMPREF1058_RS07420at 232.251 kb on + strand, within HMPREF1058_RS07420at 232.252 kb on - strand, within HMPREF1058_RS07420at 232.252 kb on - strand, within HMPREF1058_RS07420at 232.252 kb on - strand, within HMPREF1058_RS07420at 232.253 kb on + strand, within HMPREF1058_RS07420at 232.253 kb on + strand, within HMPREF1058_RS07420at 232.254 kb on - strand, within HMPREF1058_RS07420at 232.254 kb on - strand, within HMPREF1058_RS07420at 232.291 kb on - strand, within HMPREF1058_RS07420at 232.308 kb on + strand, within HMPREF1058_RS07420at 232.309 kb on - strand, within HMPREF1058_RS07420at 232.409 kb on + strand, within HMPREF1058_RS07420at 232.443 kb on + strand, within HMPREF1058_RS07420at 232.561 kb on - strand, within HMPREF1058_RS07420at 232.561 kb on - strand, within HMPREF1058_RS07420at 232.663 kb on - strandat 232.663 kb on - strandat 232.746 kb on + strandat 232.746 kb on + strandat 232.747 kb on - strandat 232.799 kb on + strandat 232.814 kb on + strandat 232.815 kb on - strandat 232.815 kb on - strandat 232.818 kb on + strandat 232.819 kb on - strandat 232.861 kb on + strandat 233.079 kb on - strand, within HMPREF1058_RS07415at 233.088 kb on - strand, within HMPREF1058_RS07415at 233.112 kb on + strand, within HMPREF1058_RS07415at 233.395 kb on + strand, within HMPREF1058_RS07415at 233.395 kb on + strand, within HMPREF1058_RS07415at 233.396 kb on - strand, within HMPREF1058_RS07415at 233.473 kb on - strand, within HMPREF1058_RS07415at 233.484 kb on + strand, within HMPREF1058_RS07415at 233.518 kb on - strand, within HMPREF1058_RS07415at 233.594 kb on + strand, within HMPREF1058_RS07415at 233.595 kb on - strand, within HMPREF1058_RS07415at 233.595 kb on - strand, within HMPREF1058_RS07415at 233.599 kb on - strand, within HMPREF1058_RS07415at 233.599 kb on - strand, within HMPREF1058_RS07415at 233.600 kb on + strand, within HMPREF1058_RS07415at 233.600 kb on + strand, within HMPREF1058_RS07415at 233.600 kb on + strand, within HMPREF1058_RS07415at 233.600 kb on + strand, within HMPREF1058_RS07415at 233.600 kb on + strand, within HMPREF1058_RS07415at 233.601 kb on - strand, within HMPREF1058_RS07415at 233.605 kb on - strand, within HMPREF1058_RS07415at 233.657 kb on - strand, within HMPREF1058_RS07415at 233.657 kb on - strand, within HMPREF1058_RS07415at 233.657 kb on - strand, within HMPREF1058_RS07415at 233.657 kb on - strand, within HMPREF1058_RS07415at 233.688 kb on + strand, within HMPREF1058_RS07415at 233.747 kb on - strand, within HMPREF1058_RS07415at 233.798 kb on - strand, within HMPREF1058_RS07415at 233.832 kb on - strand, within HMPREF1058_RS07415at 233.851 kb on - strand, within HMPREF1058_RS07415at 233.854 kb on + strand, within HMPREF1058_RS07415at 233.892 kb on + strand, within HMPREF1058_RS07415at 233.892 kb on + strand, within HMPREF1058_RS07415at 233.893 kb on - strand, within HMPREF1058_RS07415at 233.893 kb on - strand, within HMPREF1058_RS07415at 233.893 kb on - strand, within HMPREF1058_RS07415at 234.036 kb on - strand, within HMPREF1058_RS07415at 234.090 kb on + strand, within HMPREF1058_RS07415at 234.090 kb on + strand, within HMPREF1058_RS07415at 234.103 kb on - strand, within HMPREF1058_RS07415at 234.111 kb on + strand, within HMPREF1058_RS07415at 234.111 kb on + strand, within HMPREF1058_RS07415at 234.112 kb on - strand, within HMPREF1058_RS07415at 234.112 kb on - strand, within HMPREF1058_RS07415at 234.140 kb on + strand, within HMPREF1058_RS07415at 234.140 kb on + strand, within HMPREF1058_RS07415at 234.151 kb on - strand, within HMPREF1058_RS07415at 234.155 kb on + strand, within HMPREF1058_RS07415at 234.195 kb on + strand, within HMPREF1058_RS07415at 234.238 kb on + strand, within HMPREF1058_RS07415at 234.239 kb on - strand, within HMPREF1058_RS07415at 234.245 kb on - strand, within HMPREF1058_RS07415at 234.255 kb on + strand, within HMPREF1058_RS07415at 234.255 kb on + strand, within HMPREF1058_RS07415at 234.260 kb on - strand, within HMPREF1058_RS07415at 234.260 kb on - strand, within HMPREF1058_RS07415at 234.267 kb on - strand, within HMPREF1058_RS07415at 234.297 kb on - strand, within HMPREF1058_RS07415at 234.342 kb on + strand, within HMPREF1058_RS07415at 234.370 kb on - strand, within HMPREF1058_RS07415at 234.377 kb on + strand, within HMPREF1058_RS07415at 234.466 kb on - strand, within HMPREF1058_RS07415at 234.476 kb on - strand, within HMPREF1058_RS07415at 234.477 kb on + strand, within HMPREF1058_RS07415at 234.489 kb on + strand, within HMPREF1058_RS07415at 234.615 kb on + strandat 234.697 kb on - strandat 234.748 kb on + strandat 234.782 kb on - strandat 234.789 kb on + strandat 234.790 kb on - strandat 234.843 kb on - strand, within HMPREF1058_RS07410at 234.848 kb on - strand, within HMPREF1058_RS07410at 235.011 kb on + strand, within HMPREF1058_RS07410at 235.013 kb on + strand, within HMPREF1058_RS07410at 235.126 kb on + strand, within HMPREF1058_RS07410at 235.226 kb on - strand, within HMPREF1058_RS07410at 235.226 kb on - strand, within HMPREF1058_RS07410at 235.355 kb on + strand, within HMPREF1058_RS07410at 235.356 kb on - strand, within HMPREF1058_RS07410at 235.356 kb on - strand, within HMPREF1058_RS07410at 235.524 kb on + strandat 235.531 kb on - strandat 235.541 kb on + strandat 235.542 kb on - strandat 235.542 kb on - strandat 235.542 kb on - strandat 235.542 kb on - strandat 235.639 kb on - strandat 235.668 kb on + strand, within HMPREF1058_RS07405at 235.715 kb on + strand, within HMPREF1058_RS07405

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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231,776 + HMPREF1058_RS07420 0.40 +0.8
231,777 - HMPREF1058_RS07420 0.40 +0.8
231,778 + HMPREF1058_RS07420 0.40 +2.0
231,785 + HMPREF1058_RS07420 0.40 +0.0
231,785 + HMPREF1058_RS07420 0.40 +1.1
231,786 - HMPREF1058_RS07420 0.41 -1.2
231,795 + HMPREF1058_RS07420 0.41 +0.5
231,799 - HMPREF1058_RS07420 0.41 +0.9
231,817 + HMPREF1058_RS07420 0.42 +0.0
231,818 - HMPREF1058_RS07420 0.42 -0.3
231,818 - HMPREF1058_RS07420 0.42 -0.9
231,818 - HMPREF1058_RS07420 0.42 +1.9
231,843 + HMPREF1058_RS07420 0.44 +0.1
231,844 - HMPREF1058_RS07420 0.44 -0.7
231,898 + HMPREF1058_RS07420 0.47 -0.1
231,899 - +1.2
231,955 - HMPREF1058_RS07420 0.51 -0.9
231,969 + HMPREF1058_RS07420 0.52 +0.3
232,053 + HMPREF1058_RS07420 0.57 +0.1
232,053 + HMPREF1058_RS07420 0.57 +0.8
232,116 + HMPREF1058_RS07420 0.61 +0.8
232,147 + HMPREF1058_RS07420 0.63 +1.1
232,170 + HMPREF1058_RS07420 0.64 +0.4
232,176 + HMPREF1058_RS07420 0.64 +0.5
232,176 + HMPREF1058_RS07420 0.64 +0.9
232,177 - HMPREF1058_RS07420 0.64 -1.1
232,182 + HMPREF1058_RS07420 0.65 +0.7
232,218 + HMPREF1058_RS07420 0.67 +0.7
232,239 + HMPREF1058_RS07420 0.68 -0.4
232,240 - HMPREF1058_RS07420 0.68 +2.2
232,251 + HMPREF1058_RS07420 0.69 -0.2
232,252 - HMPREF1058_RS07420 0.69 -0.2
232,252 - HMPREF1058_RS07420 0.69 +0.1
232,252 - HMPREF1058_RS07420 0.69 -0.9
232,253 + HMPREF1058_RS07420 0.69 +2.0
232,253 + HMPREF1058_RS07420 0.69 +1.4
232,254 - HMPREF1058_RS07420 0.69 -0.6
232,254 - HMPREF1058_RS07420 0.69 -0.5
232,291 - HMPREF1058_RS07420 0.71 -0.9
232,308 + HMPREF1058_RS07420 0.72 +0.5
232,309 - HMPREF1058_RS07420 0.72 -1.1
232,409 + HMPREF1058_RS07420 0.78 -0.2
232,443 + HMPREF1058_RS07420 0.81 +1.4
232,561 - HMPREF1058_RS07420 0.88 -1.0
232,561 - HMPREF1058_RS07420 0.88 -1.6
232,663 - -1.2
232,663 - -0.2
232,746 + +0.6
232,746 + +1.3
232,747 - -0.2
232,799 + +1.2
232,814 + +0.8
232,815 - -0.1
232,815 - -0.6
232,818 + +0.9
232,819 - +0.6
232,861 + +0.6
233,079 - HMPREF1058_RS07415 0.16 -0.5
233,088 - HMPREF1058_RS07415 0.16 +0.2
233,112 + HMPREF1058_RS07415 0.17 +1.2
233,395 + HMPREF1058_RS07415 0.31 +1.1
233,395 + HMPREF1058_RS07415 0.31 +1.4
233,396 - HMPREF1058_RS07415 0.31 -0.4
233,473 - HMPREF1058_RS07415 0.35 -0.1
233,484 + HMPREF1058_RS07415 0.36 +1.7
233,518 - HMPREF1058_RS07415 0.38 -0.2
233,594 + HMPREF1058_RS07415 0.41 +1.9
233,595 - HMPREF1058_RS07415 0.41 -0.8
233,595 - HMPREF1058_RS07415 0.41 -0.5
233,599 - HMPREF1058_RS07415 0.42 +0.2
233,599 - HMPREF1058_RS07415 0.42 -2.1
233,600 + HMPREF1058_RS07415 0.42 +2.7
233,600 + HMPREF1058_RS07415 0.42 +0.9
233,600 + HMPREF1058_RS07415 0.42 +2.3
233,600 + HMPREF1058_RS07415 0.42 +2.0
233,600 + HMPREF1058_RS07415 0.42 +2.2
233,601 - HMPREF1058_RS07415 0.42 -0.7
233,605 - HMPREF1058_RS07415 0.42 -0.5
233,657 - HMPREF1058_RS07415 0.44 -0.7
233,657 - HMPREF1058_RS07415 0.44 -1.7
233,657 - HMPREF1058_RS07415 0.44 -0.6
233,657 - HMPREF1058_RS07415 0.44 -1.6
233,688 + HMPREF1058_RS07415 0.46 +2.2
233,747 - HMPREF1058_RS07415 0.49 +0.6
233,798 - HMPREF1058_RS07415 0.51 -0.4
233,832 - HMPREF1058_RS07415 0.53 -1.6
233,851 - HMPREF1058_RS07415 0.54 +1.4
233,854 + HMPREF1058_RS07415 0.54 +1.5
233,892 + HMPREF1058_RS07415 0.56 +2.2
233,892 + HMPREF1058_RS07415 0.56 +3.5
233,893 - HMPREF1058_RS07415 0.56 -0.8
233,893 - HMPREF1058_RS07415 0.56 -0.5
233,893 - HMPREF1058_RS07415 0.56 -0.3
234,036 - HMPREF1058_RS07415 0.63 +2.0
234,090 + HMPREF1058_RS07415 0.66 +3.7
234,090 + HMPREF1058_RS07415 0.66 +3.3
234,103 - HMPREF1058_RS07415 0.67 -1.0
234,111 + HMPREF1058_RS07415 0.67 +1.2
234,111 + HMPREF1058_RS07415 0.67 +3.3
234,112 - HMPREF1058_RS07415 0.67 +0.2
234,112 - HMPREF1058_RS07415 0.67 +0.1
234,140 + HMPREF1058_RS07415 0.69 +2.4
234,140 + HMPREF1058_RS07415 0.69 +2.2
234,151 - HMPREF1058_RS07415 0.69 +2.2
234,155 + HMPREF1058_RS07415 0.69 +3.3
234,195 + HMPREF1058_RS07415 0.71 +1.5
234,238 + HMPREF1058_RS07415 0.73 +3.1
234,239 - HMPREF1058_RS07415 0.73 -2.1
234,245 - HMPREF1058_RS07415 0.74 -1.3
234,255 + HMPREF1058_RS07415 0.74 +0.9
234,255 + HMPREF1058_RS07415 0.74 +2.3
234,260 - HMPREF1058_RS07415 0.74 +0.6
234,260 - HMPREF1058_RS07415 0.74 -0.4
234,267 - HMPREF1058_RS07415 0.75 -0.8
234,297 - HMPREF1058_RS07415 0.76 +0.8
234,342 + HMPREF1058_RS07415 0.79 +2.8
234,370 - HMPREF1058_RS07415 0.80 +0.3
234,377 + HMPREF1058_RS07415 0.80 +3.4
234,466 - HMPREF1058_RS07415 0.85 -0.6
234,476 - HMPREF1058_RS07415 0.85 -1.9
234,477 + HMPREF1058_RS07415 0.85 +3.1
234,489 + HMPREF1058_RS07415 0.86 +2.5
234,615 + +3.2
234,697 - -1.5
234,748 + +3.8
234,782 - -1.5
234,789 + +1.3
234,790 - -2.5
234,843 - HMPREF1058_RS07410 0.11 +0.4
234,848 - HMPREF1058_RS07410 0.11 -0.4
235,011 + HMPREF1058_RS07410 0.36 +2.6
235,013 + HMPREF1058_RS07410 0.36 +2.6
235,126 + HMPREF1058_RS07410 0.53 +1.6
235,226 - HMPREF1058_RS07410 0.68 -1.5
235,226 - HMPREF1058_RS07410 0.68 -0.4
235,355 + HMPREF1058_RS07410 0.87 +1.5
235,356 - HMPREF1058_RS07410 0.88 -0.5
235,356 - HMPREF1058_RS07410 0.88 -0.4
235,524 + -0.5
235,531 - -1.5
235,541 + +2.2
235,542 - -0.5
235,542 - -1.7
235,542 - -1.6
235,542 - -0.4
235,639 - -0.9
235,668 + HMPREF1058_RS07405 0.11 +0.2
235,715 + HMPREF1058_RS07405 0.14 +0.5

Or see this region's nucleotide sequence