Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07415 and HMPREF1058_RS07410 are separated by 1 nucleotides HMPREF1058_RS07410 and HMPREF1058_RS07405 overlap by 4 nucleotides
HMPREF1058_RS07415: HMPREF1058_RS07415 - family 20 glycosylhydrolase, at 232,765 to 234,771
_RS07415
HMPREF1058_RS07410: HMPREF1058_RS07410 - sialate O-acetylesterase, at 234,773 to 235,438
_RS07410
HMPREF1058_RS07405: HMPREF1058_RS07405 - sialate O-acetylesterase, at 235,435 to 237,498
_RS07405
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 233.798 kb on - strand, within HMPREF1058_RS07415 at 233.832 kb on - strand, within HMPREF1058_RS07415 at 233.851 kb on - strand, within HMPREF1058_RS07415 at 233.854 kb on + strand, within HMPREF1058_RS07415 at 233.892 kb on + strand, within HMPREF1058_RS07415 at 233.892 kb on + strand, within HMPREF1058_RS07415 at 233.893 kb on - strand, within HMPREF1058_RS07415 at 233.893 kb on - strand, within HMPREF1058_RS07415 at 233.893 kb on - strand, within HMPREF1058_RS07415 at 234.036 kb on - strand, within HMPREF1058_RS07415 at 234.090 kb on + strand, within HMPREF1058_RS07415 at 234.090 kb on + strand, within HMPREF1058_RS07415 at 234.103 kb on - strand, within HMPREF1058_RS07415 at 234.111 kb on + strand, within HMPREF1058_RS07415 at 234.111 kb on + strand, within HMPREF1058_RS07415 at 234.112 kb on - strand, within HMPREF1058_RS07415 at 234.112 kb on - strand, within HMPREF1058_RS07415 at 234.140 kb on + strand, within HMPREF1058_RS07415 at 234.140 kb on + strand, within HMPREF1058_RS07415 at 234.151 kb on - strand, within HMPREF1058_RS07415 at 234.155 kb on + strand, within HMPREF1058_RS07415 at 234.195 kb on + strand, within HMPREF1058_RS07415 at 234.238 kb on + strand, within HMPREF1058_RS07415 at 234.239 kb on - strand, within HMPREF1058_RS07415 at 234.245 kb on - strand, within HMPREF1058_RS07415 at 234.255 kb on + strand, within HMPREF1058_RS07415 at 234.255 kb on + strand, within HMPREF1058_RS07415 at 234.260 kb on - strand, within HMPREF1058_RS07415 at 234.260 kb on - strand, within HMPREF1058_RS07415 at 234.267 kb on - strand, within HMPREF1058_RS07415 at 234.297 kb on - strand, within HMPREF1058_RS07415 at 234.342 kb on + strand, within HMPREF1058_RS07415 at 234.370 kb on - strand, within HMPREF1058_RS07415 at 234.377 kb on + strand, within HMPREF1058_RS07415 at 234.466 kb on - strand, within HMPREF1058_RS07415 at 234.476 kb on - strand, within HMPREF1058_RS07415 at 234.477 kb on + strand, within HMPREF1058_RS07415 at 234.489 kb on + strand, within HMPREF1058_RS07415 at 234.615 kb on + strand at 234.697 kb on - strand at 234.748 kb on + strand at 234.782 kb on - strand at 234.789 kb on + strand at 234.790 kb on - strand at 234.843 kb on - strand, within HMPREF1058_RS07410 at 234.848 kb on - strand, within HMPREF1058_RS07410 at 235.011 kb on + strand, within HMPREF1058_RS07410 at 235.013 kb on + strand, within HMPREF1058_RS07410 at 235.126 kb on + strand, within HMPREF1058_RS07410 at 235.226 kb on - strand, within HMPREF1058_RS07410 at 235.226 kb on - strand, within HMPREF1058_RS07410 at 235.355 kb on + strand, within HMPREF1058_RS07410 at 235.356 kb on - strand, within HMPREF1058_RS07410 at 235.356 kb on - strand, within HMPREF1058_RS07410 at 235.524 kb on + strand at 235.531 kb on - strand at 235.541 kb on + strand at 235.542 kb on - strand at 235.542 kb on - strand at 235.542 kb on - strand at 235.542 kb on - strand at 235.639 kb on - strand at 235.668 kb on + strand, within HMPREF1058_RS07405 at 235.715 kb on + strand, within HMPREF1058_RS07405 at 235.932 kb on - strand, within HMPREF1058_RS07405 at 235.949 kb on - strand, within HMPREF1058_RS07405 at 235.986 kb on - strand, within HMPREF1058_RS07405 at 235.986 kb on - strand, within HMPREF1058_RS07405 at 235.986 kb on - strand, within HMPREF1058_RS07405 at 236.063 kb on - strand, within HMPREF1058_RS07405 at 236.183 kb on + strand, within HMPREF1058_RS07405 at 236.281 kb on - strand, within HMPREF1058_RS07405 at 236.428 kb on - strand, within HMPREF1058_RS07405
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 233,798 - HMPREF1058_RS07415 0.51 -0.4 233,832 - HMPREF1058_RS07415 0.53 -1.6 233,851 - HMPREF1058_RS07415 0.54 +1.4 233,854 + HMPREF1058_RS07415 0.54 +1.5 233,892 + HMPREF1058_RS07415 0.56 +2.2 233,892 + HMPREF1058_RS07415 0.56 +3.5 233,893 - HMPREF1058_RS07415 0.56 -0.8 233,893 - HMPREF1058_RS07415 0.56 -0.5 233,893 - HMPREF1058_RS07415 0.56 -0.3 234,036 - HMPREF1058_RS07415 0.63 +2.0 234,090 + HMPREF1058_RS07415 0.66 +3.7 234,090 + HMPREF1058_RS07415 0.66 +3.3 234,103 - HMPREF1058_RS07415 0.67 -1.0 234,111 + HMPREF1058_RS07415 0.67 +1.2 234,111 + HMPREF1058_RS07415 0.67 +3.3 234,112 - HMPREF1058_RS07415 0.67 +0.2 234,112 - HMPREF1058_RS07415 0.67 +0.1 234,140 + HMPREF1058_RS07415 0.69 +2.4 234,140 + HMPREF1058_RS07415 0.69 +2.2 234,151 - HMPREF1058_RS07415 0.69 +2.2 234,155 + HMPREF1058_RS07415 0.69 +3.3 234,195 + HMPREF1058_RS07415 0.71 +1.5 234,238 + HMPREF1058_RS07415 0.73 +3.1 234,239 - HMPREF1058_RS07415 0.73 -2.1 234,245 - HMPREF1058_RS07415 0.74 -1.3 234,255 + HMPREF1058_RS07415 0.74 +0.9 234,255 + HMPREF1058_RS07415 0.74 +2.3 234,260 - HMPREF1058_RS07415 0.74 +0.6 234,260 - HMPREF1058_RS07415 0.74 -0.4 234,267 - HMPREF1058_RS07415 0.75 -0.8 234,297 - HMPREF1058_RS07415 0.76 +0.8 234,342 + HMPREF1058_RS07415 0.79 +2.8 234,370 - HMPREF1058_RS07415 0.80 +0.3 234,377 + HMPREF1058_RS07415 0.80 +3.4 234,466 - HMPREF1058_RS07415 0.85 -0.6 234,476 - HMPREF1058_RS07415 0.85 -1.9 234,477 + HMPREF1058_RS07415 0.85 +3.1 234,489 + HMPREF1058_RS07415 0.86 +2.5 234,615 + +3.2 234,697 - -1.5 234,748 + +3.8 234,782 - -1.5 234,789 + +1.3 234,790 - -2.5 234,843 - HMPREF1058_RS07410 0.11 +0.4 234,848 - HMPREF1058_RS07410 0.11 -0.4 235,011 + HMPREF1058_RS07410 0.36 +2.6 235,013 + HMPREF1058_RS07410 0.36 +2.6 235,126 + HMPREF1058_RS07410 0.53 +1.6 235,226 - HMPREF1058_RS07410 0.68 -1.5 235,226 - HMPREF1058_RS07410 0.68 -0.4 235,355 + HMPREF1058_RS07410 0.87 +1.5 235,356 - HMPREF1058_RS07410 0.88 -0.5 235,356 - HMPREF1058_RS07410 0.88 -0.4 235,524 + -0.5 235,531 - -1.5 235,541 + +2.2 235,542 - -0.5 235,542 - -1.7 235,542 - -1.6 235,542 - -0.4 235,639 - -0.9 235,668 + HMPREF1058_RS07405 0.11 +0.2 235,715 + HMPREF1058_RS07405 0.14 +0.5 235,932 - HMPREF1058_RS07405 0.24 -0.9 235,949 - HMPREF1058_RS07405 0.25 -1.1 235,986 - HMPREF1058_RS07405 0.27 +2.2 235,986 - HMPREF1058_RS07405 0.27 +0.8 235,986 - HMPREF1058_RS07405 0.27 -0.5 236,063 - HMPREF1058_RS07405 0.30 -0.6 236,183 + HMPREF1058_RS07405 0.36 +2.0 236,281 - HMPREF1058_RS07405 0.41 -1.5 236,428 - HMPREF1058_RS07405 0.48 -1.7
Or see this region's nucleotide sequence