Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07415 and HMPREF1058_RS07410 are separated by 1 nucleotides HMPREF1058_RS07410 and HMPREF1058_RS07405 overlap by 4 nucleotides HMPREF1058_RS07405 and HMPREF1058_RS07400 are separated by 26 nucleotides
HMPREF1058_RS07415: HMPREF1058_RS07415 - family 20 glycosylhydrolase, at 232,765 to 234,771
_RS07415
HMPREF1058_RS07410: HMPREF1058_RS07410 - sialate O-acetylesterase, at 234,773 to 235,438
_RS07410
HMPREF1058_RS07405: HMPREF1058_RS07405 - sialate O-acetylesterase, at 235,435 to 237,498
_RS07405
HMPREF1058_RS07400: HMPREF1058_RS07400 - glycoside hydrolase family 2 protein, at 237,525 to 240,092
_RS07400
Position (kb) 235
236
237
238 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 234.466 kb on - strand, within HMPREF1058_RS07415 at 234.476 kb on - strand, within HMPREF1058_RS07415 at 234.477 kb on + strand, within HMPREF1058_RS07415 at 234.489 kb on + strand, within HMPREF1058_RS07415 at 234.615 kb on + strand at 234.697 kb on - strand at 234.748 kb on + strand at 234.782 kb on - strand at 234.789 kb on + strand at 234.790 kb on - strand at 234.843 kb on - strand, within HMPREF1058_RS07410 at 234.848 kb on - strand, within HMPREF1058_RS07410 at 235.011 kb on + strand, within HMPREF1058_RS07410 at 235.013 kb on + strand, within HMPREF1058_RS07410 at 235.126 kb on + strand, within HMPREF1058_RS07410 at 235.226 kb on - strand, within HMPREF1058_RS07410 at 235.226 kb on - strand, within HMPREF1058_RS07410 at 235.355 kb on + strand, within HMPREF1058_RS07410 at 235.356 kb on - strand, within HMPREF1058_RS07410 at 235.356 kb on - strand, within HMPREF1058_RS07410 at 235.524 kb on + strand at 235.531 kb on - strand at 235.541 kb on + strand at 235.542 kb on - strand at 235.542 kb on - strand at 235.542 kb on - strand at 235.542 kb on - strand at 235.639 kb on - strand at 235.668 kb on + strand, within HMPREF1058_RS07405 at 235.715 kb on + strand, within HMPREF1058_RS07405 at 235.932 kb on - strand, within HMPREF1058_RS07405 at 235.949 kb on - strand, within HMPREF1058_RS07405 at 235.986 kb on - strand, within HMPREF1058_RS07405 at 235.986 kb on - strand, within HMPREF1058_RS07405 at 235.986 kb on - strand, within HMPREF1058_RS07405 at 236.063 kb on - strand, within HMPREF1058_RS07405 at 236.183 kb on + strand, within HMPREF1058_RS07405 at 236.281 kb on - strand, within HMPREF1058_RS07405 at 236.428 kb on - strand, within HMPREF1058_RS07405 at 236.443 kb on + strand, within HMPREF1058_RS07405 at 236.522 kb on - strand, within HMPREF1058_RS07405 at 236.525 kb on - strand, within HMPREF1058_RS07405 at 236.527 kb on - strand, within HMPREF1058_RS07405 at 236.527 kb on - strand, within HMPREF1058_RS07405 at 236.613 kb on + strand, within HMPREF1058_RS07405 at 236.678 kb on + strand, within HMPREF1058_RS07405 at 236.718 kb on - strand, within HMPREF1058_RS07405 at 236.743 kb on - strand, within HMPREF1058_RS07405 at 236.780 kb on + strand, within HMPREF1058_RS07405 at 236.780 kb on + strand, within HMPREF1058_RS07405 at 236.781 kb on - strand, within HMPREF1058_RS07405 at 236.828 kb on - strand, within HMPREF1058_RS07405 at 236.880 kb on + strand, within HMPREF1058_RS07405 at 236.902 kb on - strand, within HMPREF1058_RS07405 at 237.014 kb on + strand, within HMPREF1058_RS07405 at 237.015 kb on - strand, within HMPREF1058_RS07405 at 237.233 kb on + strand, within HMPREF1058_RS07405 at 237.254 kb on - strand, within HMPREF1058_RS07405 at 237.256 kb on - strand, within HMPREF1058_RS07405 at 237.310 kb on - strand at 237.312 kb on - strand at 237.339 kb on - strand at 237.384 kb on - strand at 237.508 kb on + strand at 237.512 kb on - strand at 237.517 kb on + strand at 237.521 kb on + strand at 237.522 kb on - strand at 237.591 kb on + strand at 237.710 kb on + strand at 237.730 kb on - strand at 237.782 kb on + strand, within HMPREF1058_RS07400 at 237.783 kb on - strand, within HMPREF1058_RS07400 at 237.794 kb on + strand, within HMPREF1058_RS07400 at 237.859 kb on - strand, within HMPREF1058_RS07400 at 238.000 kb on + strand, within HMPREF1058_RS07400 at 238.067 kb on + strand, within HMPREF1058_RS07400 at 238.067 kb on + strand, within HMPREF1058_RS07400 at 238.068 kb on - strand, within HMPREF1058_RS07400 at 238.071 kb on + strand, within HMPREF1058_RS07400 at 238.188 kb on + strand, within HMPREF1058_RS07400 at 238.189 kb on - strand at 238.189 kb on - strand, within HMPREF1058_RS07400 at 238.192 kb on + strand, within HMPREF1058_RS07400 at 238.294 kb on - strand, within HMPREF1058_RS07400 at 238.302 kb on - strand, within HMPREF1058_RS07400 at 238.302 kb on - strand, within HMPREF1058_RS07400 at 238.381 kb on + strand, within HMPREF1058_RS07400 at 238.407 kb on - strand, within HMPREF1058_RS07400 at 238.407 kb on - strand, within HMPREF1058_RS07400 at 238.472 kb on - strand, within HMPREF1058_RS07400
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 234,466 - HMPREF1058_RS07415 0.85 -0.6 234,476 - HMPREF1058_RS07415 0.85 -1.9 234,477 + HMPREF1058_RS07415 0.85 +3.1 234,489 + HMPREF1058_RS07415 0.86 +2.5 234,615 + +3.2 234,697 - -1.5 234,748 + +3.8 234,782 - -1.5 234,789 + +1.3 234,790 - -2.5 234,843 - HMPREF1058_RS07410 0.11 +0.4 234,848 - HMPREF1058_RS07410 0.11 -0.4 235,011 + HMPREF1058_RS07410 0.36 +2.6 235,013 + HMPREF1058_RS07410 0.36 +2.6 235,126 + HMPREF1058_RS07410 0.53 +1.6 235,226 - HMPREF1058_RS07410 0.68 -1.5 235,226 - HMPREF1058_RS07410 0.68 -0.4 235,355 + HMPREF1058_RS07410 0.87 +1.5 235,356 - HMPREF1058_RS07410 0.88 -0.5 235,356 - HMPREF1058_RS07410 0.88 -0.4 235,524 + -0.5 235,531 - -1.5 235,541 + +2.2 235,542 - -0.5 235,542 - -1.7 235,542 - -1.6 235,542 - -0.4 235,639 - -0.9 235,668 + HMPREF1058_RS07405 0.11 +0.2 235,715 + HMPREF1058_RS07405 0.14 +0.5 235,932 - HMPREF1058_RS07405 0.24 -0.9 235,949 - HMPREF1058_RS07405 0.25 -1.1 235,986 - HMPREF1058_RS07405 0.27 +2.2 235,986 - HMPREF1058_RS07405 0.27 +0.8 235,986 - HMPREF1058_RS07405 0.27 -0.5 236,063 - HMPREF1058_RS07405 0.30 -0.6 236,183 + HMPREF1058_RS07405 0.36 +2.0 236,281 - HMPREF1058_RS07405 0.41 -1.5 236,428 - HMPREF1058_RS07405 0.48 -1.7 236,443 + HMPREF1058_RS07405 0.49 +2.0 236,522 - HMPREF1058_RS07405 0.53 -1.9 236,525 - HMPREF1058_RS07405 0.53 -1.1 236,527 - HMPREF1058_RS07405 0.53 -1.4 236,527 - HMPREF1058_RS07405 0.53 -0.3 236,613 + HMPREF1058_RS07405 0.57 +2.4 236,678 + HMPREF1058_RS07405 0.60 +2.7 236,718 - HMPREF1058_RS07405 0.62 -1.7 236,743 - HMPREF1058_RS07405 0.63 -1.9 236,780 + HMPREF1058_RS07405 0.65 +3.3 236,780 + HMPREF1058_RS07405 0.65 +3.0 236,781 - HMPREF1058_RS07405 0.65 -2.3 236,828 - HMPREF1058_RS07405 0.67 -1.7 236,880 + HMPREF1058_RS07405 0.70 +3.6 236,902 - HMPREF1058_RS07405 0.71 -2.4 237,014 + HMPREF1058_RS07405 0.77 +3.6 237,015 - HMPREF1058_RS07405 0.77 -1.2 237,233 + HMPREF1058_RS07405 0.87 +2.8 237,254 - HMPREF1058_RS07405 0.88 -1.4 237,256 - HMPREF1058_RS07405 0.88 -0.9 237,310 - +1.5 237,312 - -0.7 237,339 - -0.9 237,384 - -0.3 237,508 + +2.4 237,512 - +0.4 237,517 + +2.6 237,521 + +2.7 237,522 - -1.0 237,591 + +1.5 237,710 + +1.4 237,730 - +0.5 237,782 + HMPREF1058_RS07400 0.10 -0.4 237,783 - HMPREF1058_RS07400 0.10 +0.2 237,794 + HMPREF1058_RS07400 0.10 -0.8 237,859 - HMPREF1058_RS07400 0.13 -2.0 238,000 + HMPREF1058_RS07400 0.18 +2.0 238,067 + HMPREF1058_RS07400 0.21 +1.4 238,067 + HMPREF1058_RS07400 0.21 +1.5 238,068 - HMPREF1058_RS07400 0.21 -1.9 238,071 + HMPREF1058_RS07400 0.21 +3.0 238,188 + HMPREF1058_RS07400 0.26 +0.6 238,189 - -0.6 238,189 - HMPREF1058_RS07400 0.26 -1.0 238,192 + HMPREF1058_RS07400 0.26 +1.7 238,294 - HMPREF1058_RS07400 0.30 -0.1 238,302 - HMPREF1058_RS07400 0.30 -2.3 238,302 - HMPREF1058_RS07400 0.30 -1.6 238,381 + HMPREF1058_RS07400 0.33 +1.9 238,407 - HMPREF1058_RS07400 0.34 -0.2 238,407 - HMPREF1058_RS07400 0.34 -0.9 238,472 - HMPREF1058_RS07400 0.37 -1.3
Or see this region's nucleotide sequence