Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07400

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07405 and HMPREF1058_RS07400 are separated by 26 nucleotidesHMPREF1058_RS07400 and HMPREF1058_RS07395 are separated by 16 nucleotides HMPREF1058_RS07405: HMPREF1058_RS07405 - sialate O-acetylesterase, at 235,435 to 237,498 _RS07405 HMPREF1058_RS07400: HMPREF1058_RS07400 - glycoside hydrolase family 2 protein, at 237,525 to 240,092 _RS07400 HMPREF1058_RS07395: HMPREF1058_RS07395 - family 20 glycosylhydrolase, at 240,109 to 242,433 _RS07395 Position (kb) 237 238 239 240 241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 236.525 kb on - strand, within HMPREF1058_RS07405at 236.527 kb on - strand, within HMPREF1058_RS07405at 236.527 kb on - strand, within HMPREF1058_RS07405at 236.613 kb on + strand, within HMPREF1058_RS07405at 236.678 kb on + strand, within HMPREF1058_RS07405at 236.718 kb on - strand, within HMPREF1058_RS07405at 236.743 kb on - strand, within HMPREF1058_RS07405at 236.780 kb on + strand, within HMPREF1058_RS07405at 236.780 kb on + strand, within HMPREF1058_RS07405at 236.781 kb on - strand, within HMPREF1058_RS07405at 236.828 kb on - strand, within HMPREF1058_RS07405at 236.880 kb on + strand, within HMPREF1058_RS07405at 236.902 kb on - strand, within HMPREF1058_RS07405at 237.014 kb on + strand, within HMPREF1058_RS07405at 237.015 kb on - strand, within HMPREF1058_RS07405at 237.233 kb on + strand, within HMPREF1058_RS07405at 237.254 kb on - strand, within HMPREF1058_RS07405at 237.256 kb on - strand, within HMPREF1058_RS07405at 237.310 kb on - strandat 237.312 kb on - strandat 237.339 kb on - strandat 237.384 kb on - strandat 237.508 kb on + strandat 237.512 kb on - strandat 237.517 kb on + strandat 237.521 kb on + strandat 237.522 kb on - strandat 237.591 kb on + strandat 237.710 kb on + strandat 237.730 kb on - strandat 237.782 kb on + strand, within HMPREF1058_RS07400at 237.783 kb on - strand, within HMPREF1058_RS07400at 237.794 kb on + strand, within HMPREF1058_RS07400at 237.859 kb on - strand, within HMPREF1058_RS07400at 238.000 kb on + strand, within HMPREF1058_RS07400at 238.067 kb on + strand, within HMPREF1058_RS07400at 238.067 kb on + strand, within HMPREF1058_RS07400at 238.068 kb on - strand, within HMPREF1058_RS07400at 238.071 kb on + strand, within HMPREF1058_RS07400at 238.188 kb on + strand, within HMPREF1058_RS07400at 238.189 kb on - strandat 238.189 kb on - strand, within HMPREF1058_RS07400at 238.192 kb on + strand, within HMPREF1058_RS07400at 238.294 kb on - strand, within HMPREF1058_RS07400at 238.302 kb on - strand, within HMPREF1058_RS07400at 238.302 kb on - strand, within HMPREF1058_RS07400at 238.381 kb on + strand, within HMPREF1058_RS07400at 238.407 kb on - strand, within HMPREF1058_RS07400at 238.407 kb on - strand, within HMPREF1058_RS07400at 238.472 kb on - strand, within HMPREF1058_RS07400at 238.502 kb on + strand, within HMPREF1058_RS07400at 238.555 kb on + strand, within HMPREF1058_RS07400at 238.572 kb on - strand, within HMPREF1058_RS07400at 238.674 kb on - strand, within HMPREF1058_RS07400at 238.674 kb on - strand, within HMPREF1058_RS07400at 238.674 kb on - strand, within HMPREF1058_RS07400at 238.679 kb on + strand, within HMPREF1058_RS07400at 238.784 kb on + strand, within HMPREF1058_RS07400at 238.784 kb on + strand, within HMPREF1058_RS07400at 238.784 kb on + strand, within HMPREF1058_RS07400at 238.785 kb on - strand, within HMPREF1058_RS07400at 238.785 kb on - strand, within HMPREF1058_RS07400at 238.809 kb on - strand, within HMPREF1058_RS07400at 238.837 kb on - strand, within HMPREF1058_RS07400at 238.839 kb on - strand, within HMPREF1058_RS07400at 238.839 kb on - strand, within HMPREF1058_RS07400at 238.839 kb on - strand, within HMPREF1058_RS07400at 238.841 kb on + strand, within HMPREF1058_RS07400at 238.842 kb on - strand, within HMPREF1058_RS07400at 238.874 kb on + strand, within HMPREF1058_RS07400at 238.874 kb on + strand, within HMPREF1058_RS07400at 238.908 kb on - strand, within HMPREF1058_RS07400at 238.952 kb on + strand, within HMPREF1058_RS07400at 239.039 kb on + strand, within HMPREF1058_RS07400at 239.320 kb on - strand, within HMPREF1058_RS07400at 239.322 kb on + strand, within HMPREF1058_RS07400at 239.325 kb on - strand, within HMPREF1058_RS07400at 239.356 kb on - strand, within HMPREF1058_RS07400at 239.356 kb on - strand, within HMPREF1058_RS07400at 239.430 kb on - strand, within HMPREF1058_RS07400at 239.440 kb on + strand, within HMPREF1058_RS07400at 239.443 kb on - strand, within HMPREF1058_RS07400at 239.496 kb on + strand, within HMPREF1058_RS07400at 239.554 kb on + strand, within HMPREF1058_RS07400at 239.594 kb on + strand, within HMPREF1058_RS07400at 239.594 kb on + strand, within HMPREF1058_RS07400at 239.595 kb on - strand, within HMPREF1058_RS07400at 239.716 kb on + strand, within HMPREF1058_RS07400at 239.716 kb on + strand, within HMPREF1058_RS07400at 239.718 kb on + strand, within HMPREF1058_RS07400at 239.719 kb on - strand, within HMPREF1058_RS07400at 239.719 kb on - strand, within HMPREF1058_RS07400at 239.719 kb on - strand, within HMPREF1058_RS07400at 239.719 kb on - strand, within HMPREF1058_RS07400at 239.719 kb on - strand, within HMPREF1058_RS07400at 239.719 kb on - strand, within HMPREF1058_RS07400at 239.723 kb on + strand, within HMPREF1058_RS07400at 240.059 kb on + strandat 240.059 kb on + strandat 240.061 kb on + strandat 240.062 kb on - strandat 240.086 kb on + strandat 240.086 kb on + strandat 240.099 kb on - strandat 240.109 kb on - strandat 240.273 kb on - strandat 240.277 kb on + strandat 240.329 kb on - strandat 240.329 kb on - strandat 240.331 kb on - strandat 240.363 kb on - strandat 240.363 kb on - strand, within HMPREF1058_RS07395at 240.389 kb on + strand, within HMPREF1058_RS07395at 240.494 kb on - strand, within HMPREF1058_RS07395at 240.519 kb on + strand, within HMPREF1058_RS07395at 240.633 kb on - strand, within HMPREF1058_RS07395at 240.652 kb on - strand, within HMPREF1058_RS07395at 240.755 kb on + strand, within HMPREF1058_RS07395at 240.817 kb on + strand, within HMPREF1058_RS07395at 240.882 kb on + strand, within HMPREF1058_RS07395at 240.882 kb on + strand, within HMPREF1058_RS07395at 240.903 kb on + strand, within HMPREF1058_RS07395at 240.904 kb on - strand, within HMPREF1058_RS07395at 241.086 kb on + strandat 241.086 kb on + strand, within HMPREF1058_RS07395

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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236,525 - HMPREF1058_RS07405 0.53 -1.1
236,527 - HMPREF1058_RS07405 0.53 -1.4
236,527 - HMPREF1058_RS07405 0.53 -0.3
236,613 + HMPREF1058_RS07405 0.57 +2.4
236,678 + HMPREF1058_RS07405 0.60 +2.7
236,718 - HMPREF1058_RS07405 0.62 -1.7
236,743 - HMPREF1058_RS07405 0.63 -1.9
236,780 + HMPREF1058_RS07405 0.65 +3.3
236,780 + HMPREF1058_RS07405 0.65 +3.0
236,781 - HMPREF1058_RS07405 0.65 -2.3
236,828 - HMPREF1058_RS07405 0.67 -1.7
236,880 + HMPREF1058_RS07405 0.70 +3.6
236,902 - HMPREF1058_RS07405 0.71 -2.4
237,014 + HMPREF1058_RS07405 0.77 +3.6
237,015 - HMPREF1058_RS07405 0.77 -1.2
237,233 + HMPREF1058_RS07405 0.87 +2.8
237,254 - HMPREF1058_RS07405 0.88 -1.4
237,256 - HMPREF1058_RS07405 0.88 -0.9
237,310 - +1.5
237,312 - -0.7
237,339 - -0.9
237,384 - -0.3
237,508 + +2.4
237,512 - +0.4
237,517 + +2.6
237,521 + +2.7
237,522 - -1.0
237,591 + +1.5
237,710 + +1.4
237,730 - +0.5
237,782 + HMPREF1058_RS07400 0.10 -0.4
237,783 - HMPREF1058_RS07400 0.10 +0.2
237,794 + HMPREF1058_RS07400 0.10 -0.8
237,859 - HMPREF1058_RS07400 0.13 -2.0
238,000 + HMPREF1058_RS07400 0.18 +2.0
238,067 + HMPREF1058_RS07400 0.21 +1.4
238,067 + HMPREF1058_RS07400 0.21 +1.5
238,068 - HMPREF1058_RS07400 0.21 -1.9
238,071 + HMPREF1058_RS07400 0.21 +3.0
238,188 + HMPREF1058_RS07400 0.26 +0.6
238,189 - -0.6
238,189 - HMPREF1058_RS07400 0.26 -1.0
238,192 + HMPREF1058_RS07400 0.26 +1.7
238,294 - HMPREF1058_RS07400 0.30 -0.1
238,302 - HMPREF1058_RS07400 0.30 -2.3
238,302 - HMPREF1058_RS07400 0.30 -1.6
238,381 + HMPREF1058_RS07400 0.33 +1.9
238,407 - HMPREF1058_RS07400 0.34 -0.2
238,407 - HMPREF1058_RS07400 0.34 -0.9
238,472 - HMPREF1058_RS07400 0.37 -1.3
238,502 + HMPREF1058_RS07400 0.38 +1.4
238,555 + HMPREF1058_RS07400 0.40 +2.2
238,572 - HMPREF1058_RS07400 0.41 +1.2
238,674 - HMPREF1058_RS07400 0.45 -1.7
238,674 - HMPREF1058_RS07400 0.45 -1.3
238,674 - HMPREF1058_RS07400 0.45 -1.9
238,679 + HMPREF1058_RS07400 0.45 +1.9
238,784 + HMPREF1058_RS07400 0.49 +1.3
238,784 + HMPREF1058_RS07400 0.49 +2.1
238,784 + HMPREF1058_RS07400 0.49 +2.1
238,785 - HMPREF1058_RS07400 0.49 -0.6
238,785 - HMPREF1058_RS07400 0.49 -0.2
238,809 - HMPREF1058_RS07400 0.50 -0.8
238,837 - HMPREF1058_RS07400 0.51 -0.2
238,839 - HMPREF1058_RS07400 0.51 -1.1
238,839 - HMPREF1058_RS07400 0.51 -0.6
238,839 - HMPREF1058_RS07400 0.51 -1.7
238,841 + HMPREF1058_RS07400 0.51 +2.5
238,842 - HMPREF1058_RS07400 0.51 -1.5
238,874 + HMPREF1058_RS07400 0.53 +3.1
238,874 + HMPREF1058_RS07400 0.53 -0.2
238,908 - HMPREF1058_RS07400 0.54 -1.9
238,952 + HMPREF1058_RS07400 0.56 +1.9
239,039 + HMPREF1058_RS07400 0.59 +1.0
239,320 - HMPREF1058_RS07400 0.70 -1.6
239,322 + HMPREF1058_RS07400 0.70 +2.1
239,325 - HMPREF1058_RS07400 0.70 -0.8
239,356 - HMPREF1058_RS07400 0.71 -2.2
239,356 - HMPREF1058_RS07400 0.71 -1.0
239,430 - HMPREF1058_RS07400 0.74 -1.0
239,440 + HMPREF1058_RS07400 0.75 +2.4
239,443 - HMPREF1058_RS07400 0.75 -1.2
239,496 + HMPREF1058_RS07400 0.77 +2.2
239,554 + HMPREF1058_RS07400 0.79 +2.0
239,594 + HMPREF1058_RS07400 0.81 +1.0
239,594 + HMPREF1058_RS07400 0.81 +2.8
239,595 - HMPREF1058_RS07400 0.81 -1.7
239,716 + HMPREF1058_RS07400 0.85 +2.2
239,716 + HMPREF1058_RS07400 0.85 +2.5
239,718 + HMPREF1058_RS07400 0.85 +1.1
239,719 - HMPREF1058_RS07400 0.85 -1.1
239,719 - HMPREF1058_RS07400 0.85 -1.9
239,719 - HMPREF1058_RS07400 0.85 -1.8
239,719 - HMPREF1058_RS07400 0.85 -1.5
239,719 - HMPREF1058_RS07400 0.85 -1.3
239,719 - HMPREF1058_RS07400 0.85 -4.6
239,723 + HMPREF1058_RS07400 0.86 +2.3
240,059 + +2.1
240,059 + +3.6
240,061 + +3.2
240,062 - -2.4
240,086 + +2.6
240,086 + +1.8
240,099 - +0.6
240,109 - -0.1
240,273 - -2.2
240,277 + +1.3
240,329 - -1.5
240,329 - -0.2
240,331 - -1.2
240,363 - -0.1
240,363 - HMPREF1058_RS07395 0.11 -0.4
240,389 + HMPREF1058_RS07395 0.12 +0.1
240,494 - HMPREF1058_RS07395 0.17 +0.6
240,519 + HMPREF1058_RS07395 0.18 +0.1
240,633 - HMPREF1058_RS07395 0.23 -0.5
240,652 - HMPREF1058_RS07395 0.23 +2.2
240,755 + HMPREF1058_RS07395 0.28 -0.0
240,817 + HMPREF1058_RS07395 0.30 -0.1
240,882 + HMPREF1058_RS07395 0.33 -0.2
240,882 + HMPREF1058_RS07395 0.33 -1.8
240,903 + HMPREF1058_RS07395 0.34 -0.1
240,904 - HMPREF1058_RS07395 0.34 -2.4
241,086 + +2.1
241,086 + HMPREF1058_RS07395 0.42 +1.8

Or see this region's nucleotide sequence