Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07390

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07395 and HMPREF1058_RS07390 are separated by 186 nucleotidesHMPREF1058_RS07390 and HMPREF1058_RS07385 overlap by 4 nucleotides HMPREF1058_RS07395: HMPREF1058_RS07395 - family 20 glycosylhydrolase, at 240,109 to 242,433 _RS07395 HMPREF1058_RS07390: HMPREF1058_RS07390 - cyclically-permuted mutarotase family protein, at 242,620 to 243,747 _RS07390 HMPREF1058_RS07385: HMPREF1058_RS07385 - family 20 glycosylhydrolase, at 243,744 to 245,798 _RS07385 Position (kb) 242 243 244Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 241.685 kb on + strand, within HMPREF1058_RS07395at 241.704 kb on + strand, within HMPREF1058_RS07395at 241.705 kb on - strand, within HMPREF1058_RS07395at 241.708 kb on + strand, within HMPREF1058_RS07395at 241.710 kb on + strand, within HMPREF1058_RS07395at 241.714 kb on + strand, within HMPREF1058_RS07395at 241.715 kb on - strand, within HMPREF1058_RS07395at 241.745 kb on + strand, within HMPREF1058_RS07395at 241.746 kb on - strand, within HMPREF1058_RS07395at 241.782 kb on + strand, within HMPREF1058_RS07395at 241.803 kb on + strand, within HMPREF1058_RS07395at 241.803 kb on + strandat 241.813 kb on + strand, within HMPREF1058_RS07395at 241.814 kb on - strand, within HMPREF1058_RS07395at 241.817 kb on - strand, within HMPREF1058_RS07395at 241.956 kb on + strand, within HMPREF1058_RS07395at 241.965 kb on + strand, within HMPREF1058_RS07395at 241.969 kb on - strand, within HMPREF1058_RS07395at 241.983 kb on + strand, within HMPREF1058_RS07395at 241.984 kb on - strand, within HMPREF1058_RS07395at 242.058 kb on + strand, within HMPREF1058_RS07395at 242.059 kb on - strand, within HMPREF1058_RS07395at 242.059 kb on - strand, within HMPREF1058_RS07395at 242.063 kb on - strand, within HMPREF1058_RS07395at 242.064 kb on + strand, within HMPREF1058_RS07395at 242.064 kb on + strand, within HMPREF1058_RS07395at 242.112 kb on + strand, within HMPREF1058_RS07395at 242.158 kb on - strand, within HMPREF1058_RS07395at 242.301 kb on + strandat 242.301 kb on + strandat 242.302 kb on - strandat 242.302 kb on - strandat 242.352 kb on - strandat 242.362 kb on - strandat 242.434 kb on + strandat 242.435 kb on - strandat 242.439 kb on - strandat 242.441 kb on - strandat 242.474 kb on - strandat 242.474 kb on - strandat 242.518 kb on + strandat 242.597 kb on - strandat 242.634 kb on - strandat 242.634 kb on - strandat 242.774 kb on + strand, within HMPREF1058_RS07390at 242.777 kb on - strand, within HMPREF1058_RS07390at 242.821 kb on - strand, within HMPREF1058_RS07390at 242.832 kb on + strand, within HMPREF1058_RS07390at 242.876 kb on + strand, within HMPREF1058_RS07390at 242.876 kb on + strand, within HMPREF1058_RS07390at 242.876 kb on + strand, within HMPREF1058_RS07390at 242.876 kb on + strand, within HMPREF1058_RS07390at 242.877 kb on - strand, within HMPREF1058_RS07390at 242.877 kb on - strand, within HMPREF1058_RS07390at 242.877 kb on - strand, within HMPREF1058_RS07390at 242.878 kb on + strand, within HMPREF1058_RS07390at 242.878 kb on + strand, within HMPREF1058_RS07390at 242.878 kb on + strand, within HMPREF1058_RS07390at 242.879 kb on - strand, within HMPREF1058_RS07390at 242.879 kb on - strand, within HMPREF1058_RS07390at 242.879 kb on - strand, within HMPREF1058_RS07390at 243.086 kb on + strand, within HMPREF1058_RS07390at 243.086 kb on + strand, within HMPREF1058_RS07390at 243.090 kb on + strand, within HMPREF1058_RS07390at 243.091 kb on - strand, within HMPREF1058_RS07390at 243.116 kb on + strand, within HMPREF1058_RS07390at 243.131 kb on - strand, within HMPREF1058_RS07390at 243.131 kb on - strand, within HMPREF1058_RS07390at 243.132 kb on + strand, within HMPREF1058_RS07390at 243.132 kb on + strandat 243.133 kb on - strand, within HMPREF1058_RS07390at 243.133 kb on - strand, within HMPREF1058_RS07390at 243.176 kb on - strand, within HMPREF1058_RS07390at 243.343 kb on + strand, within HMPREF1058_RS07390at 243.344 kb on - strand, within HMPREF1058_RS07390at 243.345 kb on + strand, within HMPREF1058_RS07390at 243.345 kb on + strand, within HMPREF1058_RS07390at 243.345 kb on + strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.350 kb on - strand, within HMPREF1058_RS07390at 243.350 kb on - strand, within HMPREF1058_RS07390at 243.454 kb on - strand, within HMPREF1058_RS07390at 243.459 kb on - strand, within HMPREF1058_RS07390at 243.489 kb on - strand, within HMPREF1058_RS07390at 243.514 kb on + strand, within HMPREF1058_RS07390at 243.580 kb on + strand, within HMPREF1058_RS07390at 243.581 kb on - strand, within HMPREF1058_RS07390at 243.606 kb on + strand, within HMPREF1058_RS07390at 243.607 kb on - strand, within HMPREF1058_RS07390at 243.620 kb on - strand, within HMPREF1058_RS07390at 243.648 kb on - strandat 243.673 kb on + strandat 243.679 kb on - strandat 243.712 kb on - strandat 243.759 kb on - strandat 243.759 kb on - strandat 243.896 kb on - strandat 243.896 kb on - strandat 243.897 kb on + strandat 243.897 kb on + strandat 243.898 kb on - strandat 243.898 kb on - strandat 243.898 kb on - strandat 243.898 kb on - strandat 243.899 kb on + strandat 243.899 kb on + strandat 243.899 kb on + strandat 243.899 kb on + strandat 243.899 kb on + strandat 243.900 kb on - strandat 243.902 kb on - strandat 243.939 kb on + strandat 243.992 kb on + strand, within HMPREF1058_RS07385at 243.992 kb on + strand, within HMPREF1058_RS07385at 243.992 kb on + strand, within HMPREF1058_RS07385at 244.075 kb on + strand, within HMPREF1058_RS07385at 244.080 kb on - strand, within HMPREF1058_RS07385at 244.111 kb on - strand, within HMPREF1058_RS07385at 244.124 kb on + strand, within HMPREF1058_RS07385at 244.236 kb on + strand, within HMPREF1058_RS07385at 244.269 kb on + strand, within HMPREF1058_RS07385at 244.272 kb on + strand, within HMPREF1058_RS07385at 244.275 kb on - strand, within HMPREF1058_RS07385at 244.301 kb on + strand, within HMPREF1058_RS07385at 244.449 kb on + strand, within HMPREF1058_RS07385at 244.454 kb on + strand, within HMPREF1058_RS07385at 244.455 kb on - strand, within HMPREF1058_RS07385at 244.455 kb on - strand, within HMPREF1058_RS07385at 244.511 kb on + strand, within HMPREF1058_RS07385at 244.549 kb on + strand, within HMPREF1058_RS07385at 244.577 kb on + strand, within HMPREF1058_RS07385at 244.590 kb on + strand, within HMPREF1058_RS07385at 244.686 kb on - strand, within HMPREF1058_RS07385at 244.691 kb on + strand, within HMPREF1058_RS07385at 244.692 kb on - strand, within HMPREF1058_RS07385at 244.692 kb on - strand, within HMPREF1058_RS07385at 244.693 kb on + strand, within HMPREF1058_RS07385at 244.693 kb on + strand, within HMPREF1058_RS07385at 244.693 kb on + strand, within HMPREF1058_RS07385at 244.693 kb on + strand, within HMPREF1058_RS07385

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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241,685 + HMPREF1058_RS07395 0.68 +1.3
241,704 + HMPREF1058_RS07395 0.69 +1.9
241,705 - HMPREF1058_RS07395 0.69 -1.0
241,708 + HMPREF1058_RS07395 0.69 +1.2
241,710 + HMPREF1058_RS07395 0.69 +2.6
241,714 + HMPREF1058_RS07395 0.69 +2.1
241,715 - HMPREF1058_RS07395 0.69 -0.8
241,745 + HMPREF1058_RS07395 0.70 +2.3
241,746 - HMPREF1058_RS07395 0.70 -1.8
241,782 + HMPREF1058_RS07395 0.72 +4.2
241,803 + HMPREF1058_RS07395 0.73 +2.6
241,803 + +2.2
241,813 + HMPREF1058_RS07395 0.73 +2.2
241,814 - HMPREF1058_RS07395 0.73 -1.5
241,817 - HMPREF1058_RS07395 0.73 -1.4
241,956 + HMPREF1058_RS07395 0.79 +3.0
241,965 + HMPREF1058_RS07395 0.80 +2.9
241,969 - HMPREF1058_RS07395 0.80 -1.5
241,983 + HMPREF1058_RS07395 0.81 +2.6
241,984 - HMPREF1058_RS07395 0.81 -1.3
242,058 + HMPREF1058_RS07395 0.84 +3.4
242,059 - HMPREF1058_RS07395 0.84 -1.3
242,059 - HMPREF1058_RS07395 0.84 -1.3
242,063 - HMPREF1058_RS07395 0.84 -0.2
242,064 + HMPREF1058_RS07395 0.84 +2.2
242,064 + HMPREF1058_RS07395 0.84 +2.6
242,112 + HMPREF1058_RS07395 0.86 +2.7
242,158 - HMPREF1058_RS07395 0.88 -1.6
242,301 + +3.8
242,301 + +2.6
242,302 - -1.2
242,302 - -0.7
242,352 - -1.8
242,362 - -0.5
242,434 + +0.8
242,435 - -0.7
242,439 - -0.4
242,441 - -0.4
242,474 - -1.2
242,474 - -1.4
242,518 + +1.3
242,597 - -0.4
242,634 - -0.5
242,634 - -1.5
242,774 + HMPREF1058_RS07390 0.14 +4.0
242,777 - HMPREF1058_RS07390 0.14 -1.8
242,821 - HMPREF1058_RS07390 0.18 -2.0
242,832 + HMPREF1058_RS07390 0.19 +3.4
242,876 + HMPREF1058_RS07390 0.23 +3.6
242,876 + HMPREF1058_RS07390 0.23 +3.5
242,876 + HMPREF1058_RS07390 0.23 +3.9
242,876 + HMPREF1058_RS07390 0.23 +4.4
242,877 - HMPREF1058_RS07390 0.23 -1.5
242,877 - HMPREF1058_RS07390 0.23 -2.7
242,877 - HMPREF1058_RS07390 0.23 +0.3
242,878 + HMPREF1058_RS07390 0.23 +4.3
242,878 + HMPREF1058_RS07390 0.23 +3.9
242,878 + HMPREF1058_RS07390 0.23 +4.6
242,879 - HMPREF1058_RS07390 0.23 +0.3
242,879 - HMPREF1058_RS07390 0.23 -1.9
242,879 - HMPREF1058_RS07390 0.23 +0.6
243,086 + HMPREF1058_RS07390 0.41 +4.4
243,086 + HMPREF1058_RS07390 0.41 +3.3
243,090 + HMPREF1058_RS07390 0.42 +4.1
243,091 - HMPREF1058_RS07390 0.42 -1.9
243,116 + HMPREF1058_RS07390 0.44 +4.2
243,131 - HMPREF1058_RS07390 0.45 -0.3
243,131 - HMPREF1058_RS07390 0.45 -1.0
243,132 + HMPREF1058_RS07390 0.45 +4.4
243,132 + +0.3
243,133 - HMPREF1058_RS07390 0.45 -3.0
243,133 - HMPREF1058_RS07390 0.45 -1.7
243,176 - HMPREF1058_RS07390 0.49 -0.6
243,343 + HMPREF1058_RS07390 0.64 +6.3
243,344 - HMPREF1058_RS07390 0.64 -0.5
243,345 + HMPREF1058_RS07390 0.64 +2.7
243,345 + HMPREF1058_RS07390 0.64 +4.0
243,345 + HMPREF1058_RS07390 0.64 +4.0
243,346 - HMPREF1058_RS07390 0.64 -0.5
243,346 - HMPREF1058_RS07390 0.64 -0.4
243,346 - HMPREF1058_RS07390 0.64 -1.8
243,346 - HMPREF1058_RS07390 0.64 -2.2
243,346 - HMPREF1058_RS07390 0.64 -1.4
243,346 - HMPREF1058_RS07390 0.64 -0.9
243,350 - HMPREF1058_RS07390 0.65 -2.2
243,350 - HMPREF1058_RS07390 0.65 -2.0
243,454 - HMPREF1058_RS07390 0.74 +0.6
243,459 - HMPREF1058_RS07390 0.74 -2.5
243,489 - HMPREF1058_RS07390 0.77 -2.5
243,514 + HMPREF1058_RS07390 0.79 +5.0
243,580 + HMPREF1058_RS07390 0.85 +3.7
243,581 - HMPREF1058_RS07390 0.85 -2.7
243,606 + HMPREF1058_RS07390 0.87 +4.0
243,607 - HMPREF1058_RS07390 0.88 -1.1
243,620 - HMPREF1058_RS07390 0.89 -1.5
243,648 - -1.9
243,673 + +4.2
243,679 - -0.1
243,712 - -2.3
243,759 - -1.3
243,759 - -2.8
243,896 - -2.9
243,896 - -2.1
243,897 + +1.2
243,897 + +1.4
243,898 - -0.6
243,898 - +0.1
243,898 - -2.5
243,898 - -3.0
243,899 + +1.3
243,899 + +0.8
243,899 + +0.0
243,899 + +1.2
243,899 + +0.3
243,900 - +0.9
243,902 - +0.5
243,939 + +0.5
243,992 + HMPREF1058_RS07385 0.12 +1.3
243,992 + HMPREF1058_RS07385 0.12 +1.5
243,992 + HMPREF1058_RS07385 0.12 +0.0
244,075 + HMPREF1058_RS07385 0.16 +2.3
244,080 - HMPREF1058_RS07385 0.16 -1.6
244,111 - HMPREF1058_RS07385 0.18 -0.3
244,124 + HMPREF1058_RS07385 0.18 +1.5
244,236 + HMPREF1058_RS07385 0.24 -0.1
244,269 + HMPREF1058_RS07385 0.26 +3.0
244,272 + HMPREF1058_RS07385 0.26 +1.7
244,275 - HMPREF1058_RS07385 0.26 -0.1
244,301 + HMPREF1058_RS07385 0.27 +3.3
244,449 + HMPREF1058_RS07385 0.34 +2.5
244,454 + HMPREF1058_RS07385 0.35 +4.2
244,455 - HMPREF1058_RS07385 0.35 -2.5
244,455 - HMPREF1058_RS07385 0.35 -2.1
244,511 + HMPREF1058_RS07385 0.37 +2.1
244,549 + HMPREF1058_RS07385 0.39 +2.1
244,577 + HMPREF1058_RS07385 0.41 +2.3
244,590 + HMPREF1058_RS07385 0.41 +2.7
244,686 - HMPREF1058_RS07385 0.46 -3.0
244,691 + HMPREF1058_RS07385 0.46 +3.5
244,692 - HMPREF1058_RS07385 0.46 -1.9
244,692 - HMPREF1058_RS07385 0.46 -3.1
244,693 + HMPREF1058_RS07385 0.46 +2.3
244,693 + HMPREF1058_RS07385 0.46 +3.4
244,693 + HMPREF1058_RS07385 0.46 +3.6
244,693 + HMPREF1058_RS07385 0.46 +3.6

Or see this region's nucleotide sequence