Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07385

Experiment: Beta-Lactose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07390 and HMPREF1058_RS07385 overlap by 4 nucleotidesHMPREF1058_RS07385 and HMPREF1058_RS07380 are separated by 26 nucleotides HMPREF1058_RS07390: HMPREF1058_RS07390 - cyclically-permuted mutarotase family protein, at 242,620 to 243,747 _RS07390 HMPREF1058_RS07385: HMPREF1058_RS07385 - family 20 glycosylhydrolase, at 243,744 to 245,798 _RS07385 HMPREF1058_RS07380: HMPREF1058_RS07380 - GH92 family glycosyl hydrolase, at 245,825 to 248,077 _RS07380 Position (kb) 243 244 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 242.774 kb on + strand, within HMPREF1058_RS07390at 242.777 kb on - strand, within HMPREF1058_RS07390at 242.821 kb on - strand, within HMPREF1058_RS07390at 242.832 kb on + strand, within HMPREF1058_RS07390at 242.876 kb on + strand, within HMPREF1058_RS07390at 242.876 kb on + strand, within HMPREF1058_RS07390at 242.876 kb on + strand, within HMPREF1058_RS07390at 242.876 kb on + strand, within HMPREF1058_RS07390at 242.877 kb on - strand, within HMPREF1058_RS07390at 242.877 kb on - strand, within HMPREF1058_RS07390at 242.877 kb on - strand, within HMPREF1058_RS07390at 242.878 kb on + strand, within HMPREF1058_RS07390at 242.878 kb on + strand, within HMPREF1058_RS07390at 242.878 kb on + strand, within HMPREF1058_RS07390at 242.879 kb on - strand, within HMPREF1058_RS07390at 242.879 kb on - strand, within HMPREF1058_RS07390at 242.879 kb on - strand, within HMPREF1058_RS07390at 243.086 kb on + strand, within HMPREF1058_RS07390at 243.086 kb on + strand, within HMPREF1058_RS07390at 243.090 kb on + strand, within HMPREF1058_RS07390at 243.091 kb on - strand, within HMPREF1058_RS07390at 243.116 kb on + strand, within HMPREF1058_RS07390at 243.131 kb on - strand, within HMPREF1058_RS07390at 243.131 kb on - strand, within HMPREF1058_RS07390at 243.132 kb on + strand, within HMPREF1058_RS07390at 243.132 kb on + strandat 243.133 kb on - strand, within HMPREF1058_RS07390at 243.133 kb on - strand, within HMPREF1058_RS07390at 243.176 kb on - strand, within HMPREF1058_RS07390at 243.343 kb on + strand, within HMPREF1058_RS07390at 243.344 kb on - strand, within HMPREF1058_RS07390at 243.345 kb on + strand, within HMPREF1058_RS07390at 243.345 kb on + strand, within HMPREF1058_RS07390at 243.345 kb on + strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.350 kb on - strand, within HMPREF1058_RS07390at 243.350 kb on - strand, within HMPREF1058_RS07390at 243.454 kb on - strand, within HMPREF1058_RS07390at 243.459 kb on - strand, within HMPREF1058_RS07390at 243.489 kb on - strand, within HMPREF1058_RS07390at 243.514 kb on + strand, within HMPREF1058_RS07390at 243.580 kb on + strand, within HMPREF1058_RS07390at 243.581 kb on - strand, within HMPREF1058_RS07390at 243.606 kb on + strand, within HMPREF1058_RS07390at 243.607 kb on - strand, within HMPREF1058_RS07390at 243.620 kb on - strand, within HMPREF1058_RS07390at 243.648 kb on - strandat 243.673 kb on + strandat 243.679 kb on - strandat 243.712 kb on - strandat 243.759 kb on - strandat 243.759 kb on - strandat 243.896 kb on - strandat 243.896 kb on - strandat 243.897 kb on + strandat 243.897 kb on + strandat 243.898 kb on - strandat 243.898 kb on - strandat 243.898 kb on - strandat 243.898 kb on - strandat 243.899 kb on + strandat 243.899 kb on + strandat 243.899 kb on + strandat 243.899 kb on + strandat 243.899 kb on + strandat 243.900 kb on - strandat 243.902 kb on - strandat 243.939 kb on + strandat 243.992 kb on + strand, within HMPREF1058_RS07385at 243.992 kb on + strand, within HMPREF1058_RS07385at 243.992 kb on + strand, within HMPREF1058_RS07385at 244.075 kb on + strand, within HMPREF1058_RS07385at 244.080 kb on - strand, within HMPREF1058_RS07385at 244.111 kb on - strand, within HMPREF1058_RS07385at 244.124 kb on + strand, within HMPREF1058_RS07385at 244.236 kb on + strand, within HMPREF1058_RS07385at 244.269 kb on + strand, within HMPREF1058_RS07385at 244.272 kb on + strand, within HMPREF1058_RS07385at 244.275 kb on - strand, within HMPREF1058_RS07385at 244.301 kb on + strand, within HMPREF1058_RS07385at 244.449 kb on + strand, within HMPREF1058_RS07385at 244.454 kb on + strand, within HMPREF1058_RS07385at 244.455 kb on - strand, within HMPREF1058_RS07385at 244.455 kb on - strand, within HMPREF1058_RS07385at 244.511 kb on + strand, within HMPREF1058_RS07385at 244.549 kb on + strand, within HMPREF1058_RS07385at 244.577 kb on + strand, within HMPREF1058_RS07385at 244.590 kb on + strand, within HMPREF1058_RS07385at 244.686 kb on - strand, within HMPREF1058_RS07385at 244.691 kb on + strand, within HMPREF1058_RS07385at 244.692 kb on - strand, within HMPREF1058_RS07385at 244.692 kb on - strand, within HMPREF1058_RS07385at 244.693 kb on + strand, within HMPREF1058_RS07385at 244.693 kb on + strand, within HMPREF1058_RS07385at 244.693 kb on + strand, within HMPREF1058_RS07385at 244.693 kb on + strand, within HMPREF1058_RS07385at 244.752 kb on - strand, within HMPREF1058_RS07385at 244.808 kb on + strand, within HMPREF1058_RS07385at 244.838 kb on + strand, within HMPREF1058_RS07385at 244.883 kb on + strand, within HMPREF1058_RS07385at 244.955 kb on + strand, within HMPREF1058_RS07385at 244.955 kb on + strand, within HMPREF1058_RS07385at 244.956 kb on - strand, within HMPREF1058_RS07385at 244.956 kb on - strand, within HMPREF1058_RS07385at 245.032 kb on - strand, within HMPREF1058_RS07385at 245.061 kb on - strand, within HMPREF1058_RS07385at 245.114 kb on - strand, within HMPREF1058_RS07385at 245.136 kb on + strand, within HMPREF1058_RS07385at 245.229 kb on + strand, within HMPREF1058_RS07385at 245.229 kb on + strand, within HMPREF1058_RS07385at 245.229 kb on + strand, within HMPREF1058_RS07385at 245.315 kb on - strand, within HMPREF1058_RS07385at 245.363 kb on + strand, within HMPREF1058_RS07385at 245.394 kb on + strand, within HMPREF1058_RS07385at 245.435 kb on - strand, within HMPREF1058_RS07385at 245.460 kb on + strandat 245.661 kb on - strandat 245.661 kb on - strandat 245.727 kb on + strandat 245.728 kb on - strandat 245.797 kb on - strandat 245.806 kb on + strandat 245.809 kb on - strandat 245.821 kb on + strandat 245.822 kb on - strandat 245.901 kb on + strandat 245.906 kb on + strandat 245.906 kb on + strandat 245.910 kb on + strandat 245.911 kb on - strandat 246.071 kb on - strand, within HMPREF1058_RS07380at 246.071 kb on - strand, within HMPREF1058_RS07380at 246.071 kb on - strand, within HMPREF1058_RS07380at 246.074 kb on + strand, within HMPREF1058_RS07380at 246.075 kb on - strand, within HMPREF1058_RS07380at 246.139 kb on - strand, within HMPREF1058_RS07380at 246.178 kb on + strand, within HMPREF1058_RS07380at 246.195 kb on - strand, within HMPREF1058_RS07380at 246.227 kb on - strand, within HMPREF1058_RS07380at 246.234 kb on + strand, within HMPREF1058_RS07380at 246.245 kb on + strand, within HMPREF1058_RS07380at 246.246 kb on - strand, within HMPREF1058_RS07380at 246.286 kb on + strand, within HMPREF1058_RS07380at 246.557 kb on + strand, within HMPREF1058_RS07380at 246.557 kb on + strand, within HMPREF1058_RS07380at 246.557 kb on + strand, within HMPREF1058_RS07380at 246.566 kb on + strand, within HMPREF1058_RS07380at 246.588 kb on + strand, within HMPREF1058_RS07380at 246.603 kb on + strand, within HMPREF1058_RS07380at 246.604 kb on - strand, within HMPREF1058_RS07380at 246.604 kb on - strand, within HMPREF1058_RS07380at 246.678 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C)
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242,774 + HMPREF1058_RS07390 0.14 +4.0
242,777 - HMPREF1058_RS07390 0.14 -1.8
242,821 - HMPREF1058_RS07390 0.18 -2.0
242,832 + HMPREF1058_RS07390 0.19 +3.4
242,876 + HMPREF1058_RS07390 0.23 +3.6
242,876 + HMPREF1058_RS07390 0.23 +3.5
242,876 + HMPREF1058_RS07390 0.23 +3.9
242,876 + HMPREF1058_RS07390 0.23 +4.4
242,877 - HMPREF1058_RS07390 0.23 -1.5
242,877 - HMPREF1058_RS07390 0.23 -2.7
242,877 - HMPREF1058_RS07390 0.23 +0.3
242,878 + HMPREF1058_RS07390 0.23 +4.3
242,878 + HMPREF1058_RS07390 0.23 +3.9
242,878 + HMPREF1058_RS07390 0.23 +4.6
242,879 - HMPREF1058_RS07390 0.23 +0.3
242,879 - HMPREF1058_RS07390 0.23 -1.9
242,879 - HMPREF1058_RS07390 0.23 +0.6
243,086 + HMPREF1058_RS07390 0.41 +4.4
243,086 + HMPREF1058_RS07390 0.41 +3.3
243,090 + HMPREF1058_RS07390 0.42 +4.1
243,091 - HMPREF1058_RS07390 0.42 -1.9
243,116 + HMPREF1058_RS07390 0.44 +4.2
243,131 - HMPREF1058_RS07390 0.45 -0.3
243,131 - HMPREF1058_RS07390 0.45 -1.0
243,132 + HMPREF1058_RS07390 0.45 +4.4
243,132 + +0.3
243,133 - HMPREF1058_RS07390 0.45 -3.0
243,133 - HMPREF1058_RS07390 0.45 -1.7
243,176 - HMPREF1058_RS07390 0.49 -0.6
243,343 + HMPREF1058_RS07390 0.64 +6.3
243,344 - HMPREF1058_RS07390 0.64 -0.5
243,345 + HMPREF1058_RS07390 0.64 +2.7
243,345 + HMPREF1058_RS07390 0.64 +4.0
243,345 + HMPREF1058_RS07390 0.64 +4.0
243,346 - HMPREF1058_RS07390 0.64 -0.5
243,346 - HMPREF1058_RS07390 0.64 -0.4
243,346 - HMPREF1058_RS07390 0.64 -1.8
243,346 - HMPREF1058_RS07390 0.64 -2.2
243,346 - HMPREF1058_RS07390 0.64 -1.4
243,346 - HMPREF1058_RS07390 0.64 -0.9
243,350 - HMPREF1058_RS07390 0.65 -2.2
243,350 - HMPREF1058_RS07390 0.65 -2.0
243,454 - HMPREF1058_RS07390 0.74 +0.6
243,459 - HMPREF1058_RS07390 0.74 -2.5
243,489 - HMPREF1058_RS07390 0.77 -2.5
243,514 + HMPREF1058_RS07390 0.79 +5.0
243,580 + HMPREF1058_RS07390 0.85 +3.7
243,581 - HMPREF1058_RS07390 0.85 -2.7
243,606 + HMPREF1058_RS07390 0.87 +4.0
243,607 - HMPREF1058_RS07390 0.88 -1.1
243,620 - HMPREF1058_RS07390 0.89 -1.5
243,648 - -1.9
243,673 + +4.2
243,679 - -0.1
243,712 - -2.3
243,759 - -1.3
243,759 - -2.8
243,896 - -2.9
243,896 - -2.1
243,897 + +1.2
243,897 + +1.4
243,898 - -0.6
243,898 - +0.1
243,898 - -2.5
243,898 - -3.0
243,899 + +1.3
243,899 + +0.8
243,899 + +0.0
243,899 + +1.2
243,899 + +0.3
243,900 - +0.9
243,902 - +0.5
243,939 + +0.5
243,992 + HMPREF1058_RS07385 0.12 +1.3
243,992 + HMPREF1058_RS07385 0.12 +1.5
243,992 + HMPREF1058_RS07385 0.12 +0.0
244,075 + HMPREF1058_RS07385 0.16 +2.3
244,080 - HMPREF1058_RS07385 0.16 -1.6
244,111 - HMPREF1058_RS07385 0.18 -0.3
244,124 + HMPREF1058_RS07385 0.18 +1.5
244,236 + HMPREF1058_RS07385 0.24 -0.1
244,269 + HMPREF1058_RS07385 0.26 +3.0
244,272 + HMPREF1058_RS07385 0.26 +1.7
244,275 - HMPREF1058_RS07385 0.26 -0.1
244,301 + HMPREF1058_RS07385 0.27 +3.3
244,449 + HMPREF1058_RS07385 0.34 +2.5
244,454 + HMPREF1058_RS07385 0.35 +4.2
244,455 - HMPREF1058_RS07385 0.35 -2.5
244,455 - HMPREF1058_RS07385 0.35 -2.1
244,511 + HMPREF1058_RS07385 0.37 +2.1
244,549 + HMPREF1058_RS07385 0.39 +2.1
244,577 + HMPREF1058_RS07385 0.41 +2.3
244,590 + HMPREF1058_RS07385 0.41 +2.7
244,686 - HMPREF1058_RS07385 0.46 -3.0
244,691 + HMPREF1058_RS07385 0.46 +3.5
244,692 - HMPREF1058_RS07385 0.46 -1.9
244,692 - HMPREF1058_RS07385 0.46 -3.1
244,693 + HMPREF1058_RS07385 0.46 +2.3
244,693 + HMPREF1058_RS07385 0.46 +3.4
244,693 + HMPREF1058_RS07385 0.46 +3.6
244,693 + HMPREF1058_RS07385 0.46 +3.6
244,752 - HMPREF1058_RS07385 0.49 -0.3
244,808 + HMPREF1058_RS07385 0.52 +3.7
244,838 + HMPREF1058_RS07385 0.53 +3.8
244,883 + HMPREF1058_RS07385 0.55 +5.3
244,955 + HMPREF1058_RS07385 0.59 +3.3
244,955 + HMPREF1058_RS07385 0.59 +3.1
244,956 - HMPREF1058_RS07385 0.59 -3.0
244,956 - HMPREF1058_RS07385 0.59 -1.3
245,032 - HMPREF1058_RS07385 0.63 -3.3
245,061 - HMPREF1058_RS07385 0.64 +0.3
245,114 - HMPREF1058_RS07385 0.67 -0.5
245,136 + HMPREF1058_RS07385 0.68 +4.3
245,229 + HMPREF1058_RS07385 0.72 +3.3
245,229 + HMPREF1058_RS07385 0.72 +3.1
245,229 + HMPREF1058_RS07385 0.72 +3.5
245,315 - HMPREF1058_RS07385 0.76 -1.6
245,363 + HMPREF1058_RS07385 0.79 +4.6
245,394 + HMPREF1058_RS07385 0.80 +3.1
245,435 - HMPREF1058_RS07385 0.82 -1.9
245,460 + +4.6
245,661 - -0.9
245,661 - -2.5
245,727 + +2.9
245,728 - +2.2
245,797 - -1.3
245,806 + +1.3
245,809 - -3.5
245,821 + -0.4
245,822 - -2.2
245,901 + -0.4
245,906 + -0.5
245,906 + -0.3
245,910 + -0.1
245,911 - -1.9
246,071 - HMPREF1058_RS07380 0.11 -2.2
246,071 - HMPREF1058_RS07380 0.11 -1.8
246,071 - HMPREF1058_RS07380 0.11 -1.2
246,074 + HMPREF1058_RS07380 0.11 +0.3
246,075 - HMPREF1058_RS07380 0.11 -0.8
246,139 - HMPREF1058_RS07380 0.14 -1.6
246,178 + HMPREF1058_RS07380 0.16 -0.3
246,195 - HMPREF1058_RS07380 0.16 -3.2
246,227 - HMPREF1058_RS07380 0.18 -1.1
246,234 + HMPREF1058_RS07380 0.18 -0.1
246,245 + HMPREF1058_RS07380 0.19 -1.3
246,246 - HMPREF1058_RS07380 0.19 -0.6
246,286 + HMPREF1058_RS07380 0.20 +0.4
246,557 + HMPREF1058_RS07380 0.32 +0.7
246,557 + HMPREF1058_RS07380 0.32 +1.5
246,557 + HMPREF1058_RS07380 0.32 -1.7
246,566 + HMPREF1058_RS07380 0.33 +0.3
246,588 + HMPREF1058_RS07380 0.34 +0.7
246,603 + HMPREF1058_RS07380 0.35 +0.4
246,604 - HMPREF1058_RS07380 0.35 +0.6
246,604 - HMPREF1058_RS07380 0.35 -1.5
246,678 + +0.4

Or see this region's nucleotide sequence